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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1254 fasta sequence
[TTCCGAGCCGGCCGCCAATTCGTGGTTCCTCCTCCTCACGGGCGGCGGCGACGGCGGCGACTACGGCGATGCGGCTGCTCTCCGGCGCCTCTGCTTCCCGAATCCCCTGCCCCCTCCTCTCACTCGCCCGCGCGAGGGCAAGATGCTTGCCGGTCCCCGCCTCTGCCACCGCGTGCCGAGCGGCCTCCTCGTCAGCCGCGGCGGCCGCGGGCGACGGCGGCGCGCTGAAGCCGTGGTTGTTCGTCGGGCTCGGGAACCCCGGGAAAGTGTACCAAGGGACTCTCCACAACGTTGGATTCGAGATGATTGATGTTATAGCAGAAGCTGAAGGTATATCCCTCAGCAGTATGCAGTTCAAGGCAATGGTAGGAAAAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGGTGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATAGGGGCTTGGAGGCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAACTTATGTGAACACCGCACAGTCCTCTGAAATGTTGAATAGATGATAAAGTGTTCAATTTATTCTTATAACATAAAGATTCTTATGTCAGATCTGAATGTTTCCTATCCAGTAGACACTTGCACACATGGTGGTCATTTTACTCTCAGGAAATCCTGAGCTCCCGAGGACGGAAGAGATTATTTGAGCTGCAGCAACTTGGTACGGTGATTTTCACCAGCAGCTTAAATACA-GGGAAGTTAGAGACGTCACACTACATGCGTACTTCTGTTCCTTACATTTGTAGCCTTGTATTGATTTCAAAAAACAATTGTAGCACTGTAATTTGGTGACCTGGTAGGGGGAGAGAGAGAGAGAAGCCTTTTTGTCTTGGTAATCTATACTTTGGAAATCGTCAGCATACTGTTAAACAGGATTTCAGTGTTCCACAGTACCTTGTCTCACTTTCTATATGTATATACAAGTGTTGATTAAGTAAT]
[+] EMBL AK066034 [TTCCGAGCCGGCCGCCAATTCGTGGTTCCTCCTCCTCACGGGCGGCGGCGACGGCGGCGACTACGGCGATGCGGCTGCTCTCCGGCGCCTCTGCTTCCCGAATCCCCTGCCCCCTCCTCTCACTCGCCCGCGCGAGGGCAAGATGCTTGCCGGTCCCCGCCTCTGCCACCGCGTGCCGAGCGGCCTCCTCGTCAGCCGCGGCGGCCGCGGGCGACGGCGGCGCGCTGAAGCCGTGGTTGTTCGTCGGGCTCGGGAACCCCGGGAAAGTGTACCAAGGGACTCTCCACAACGTTGGATTCGAGATGATTGATGTTATAGCAGAAGCTGAAGGTATATCCCTCAGCAGTATGCAGTTCAAGGCAATGGTAGGAAAAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGGTGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATAGGGGCTTGGAGGCAGTTAGAATAATGGCACTTGTGGGATTCAACAAGAGCGCAACTTATGTGAACACCGCACAGTCCTCTGAAATGTTGAATAGATGATAAAGTGTTCAATTTATTCTTATAACATAAAGATTCTTATGTCAGATCTGAATGTTTCCTATCCAGTAGACACTTGCACACATGGTGGTCATTTTACTCTCAGGAAATCCTGAGCTCCCGAGGACGGAAGAGATTATTTGAGCTGCAGCAACTTGGTACGGTGATTTTCACCAGCAGCTTAAATACA GGGAAGTTAGAGACGTCACACTACATGCGTACTTCTGTTCCTTACATTTGTAGCCTTGTATTGATTTCAAAAAACAATTGTAGCACTGTAATTTGGTGACCTGGTAGGGGGAGAGAGAGAGAGAAGCCTTTTTGTCTTGGTAATCTATACTTTGGAAATCGTCAGCATACTGTTAAACAGGATT ]
[+] EMBL AK099894 [ GTTCCTCCTCCTCACGGGCGGCGGCGACGGCGGCGACTACGGCGATGCGGCTGCTCTCCGGCGCCTCTGCTTCCCGAATCCCCTGCCCCCTCCTCTCACTCGCCCGCGCGAGGGCAAGATGCTTGCCGGTCCCCGCCTCTGCCACCGCGTGCCGAGCGGCCTCCTCGTCAGCCGCGGCGGCCGCGGGCGACGGCGGCGCGCTGAAGCCGTGGTTGTTCGTCGGGCTCGGGAACCCCGGGAAAGTGTACCAAGGGACTCGCCACAACGTTGGATTCGAGATGATTGATGTTATAGCAGAAGCTGAAGGTATATCCCTCAGCAGTATGCAGTTCAAGGCAATGGTAGGAAAAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGGTGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATAGGGGCTTGGAGGCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAACTTATGTGAACACCGCACAGTCCTCTGAAATGTTGAATAGATGATAAAGTGTTCAATTTATTCTTATAACATAAAGATTCTTATGTCAGATCTGAATGTTTCCTATCCAGTAGACACTTGCACACATGGTGGTCATTTTACTCTCAGGAAATCCTGAGCTCCCGAGGACGGAAGAGATTATTTGAGCTGCAGCAACTTGGTACGGTGATTTTCACCAGCAGCTTAAATACA GGGAAGTTAGAGACGTCACACTACATGCGTACTTCTGTTCCTTACATTTGTAGCCTTGTATTGATTTCAAAAAACAATTGTAGCACTGTAATTTGGTGACCTGGTAGGGGGAGAGAGAGAGAGAAGCCTTTTTGTCTTGGTAATCTATACTTTGGAAATCGTCAGCATACTGTTAAACAGGATTTCAGTGTTCCACAGTACCTTGTCTCACTTTCTATATGTATATACAAGTGTTGATTAAGTAAT]
[+] EMBL CA766005 [ CGTTGGATTCGAGATGATTGATGTTATAGCAGAAGCTGAAGGTATATCCCTCAGCAGTATGCAGTTCAAGGCAATGGTAGGAAAAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATAGGGGCTTGGAGGCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAACTTATGTGAACACCGCACAGTCCTCTGAAATGTTGAATAGATGATAAAGTGTTCAATTTATTCTTATAACATAAAGATTCTTATGTCAGATCTGAATGTTTCCTATCCAGTAGACACTTGCACACATGGTGGTCATTTTACTCTCAGGAAATCCTGAGCTCCCGAGGACGGAAGAGGNTATTTGAGCTGCAGCAACTTGGTACGGTGATTTTCACCAGCAGCTT AATACAGGGGAAGTTAGAGACGTCACACTACATGCGTACTTCTGGTCCTTACATTTGGAGCCCTGGATTGATTTC AAAAACAATTGGAGCACTGGAANTTGGTGACCT ]
consensusID : consensus_8427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 788 fasta sequence
[TAATATTGACAATTAATATAATTCTTTTAACTGATACATCTTGTGTTGAAAGAAGCCATGCTATCTGGATTCCCAGAGCTGTACTTTGTTCCTCAAGTCTTGCACATTACCTTTTCAACTCTAACAATATTTATGCGGTTTTCATAAATATTACCTATAAACAAATGCTATTTGTTTAAGATACTCTATGCTTGAATATTAAACATGAGCGGGTGCATATACTTATTTGAAATTCTGAAGGTAGTGCTATCAAACATTCATAACAGAAAATAATATTTAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTAAGTATACTGATTCCAAAACAACCTTCACTACTAGTTGTTCCTTCTTTTTTTTACCTTTTTCGTTTGACAAATCGAGTTATACAGGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGTATAGCGCTTCTCTCCTTTTTCAACTCAGNTACCATGTCTGAAAATATTCNTTGCGGNGATATCTTGCAGGCATTGGACGACCACCTGGGAAGANGGGATCCTGNCAANTTTGGTCTCCGACCATTTAACAGAAAAGACAGGGAAGAGGGTTTAATTANAATGCTTTC]
[+] EMBL CB096659 [TAATATTGACAATTAATATAATTCTTTTAACTGATACATCTTGTGTTGAAAGAAGCCATGCTATCTGGATTCCCAGAGCTGTACTTTGTTCCTCAAGTCTTGCACATTACCTTTTCAACTCTAACAATATTTATGCGGTTTTCATAAATATTACCTATAAACAAATGCTATTTGTTTAAGATACTCTATGCTTGAATATTAAACATGAGCGGGTGCATATACTTATTTGAAATTCTGAAGGTAGTGCTATCAAACATTCATAACAGAAAATAATATTTAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTGTAAGTATACTGATTCCAAAACAACCTTCACTACTAGTTGTTCCTTCTTTTTTTTACCTTTTTCGTTTGACAAATCGAGTTATACAGGTGGGGCAGTTGGTCTCATATTTCAAGATACCACTTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGTATAGCGCTTCTCTCCTTTTTCAACTCAGNTACCATGTCTGAAAATATTCNTTGCGGNGATATCTTGCAGGCATTGGACGACCACCTGGGAAGANGGGATCCTGNCAANTTTGGTCTCCGACCATTTAACAGAAAAGACAGGGAAGAGGGTTTAATTANAATGCTTTC]
consensusID : consensus_8427#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence
[TTAATCAAGTTCTTGTGGTAAAGTGCTATCCTCGAGTTTCTGGTTGCTGTTTTTTTTAACAGATTGCTATATTTTGATTCTTCATTCATTTTTTATTCTCTGCAGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATNNNGGCTTNNNNNCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAACTTATGTNNNNNNNGCACAGTCCTCTNNNNTGTTGANNNNNTGNNNNNNNGTTCAATTTATTCTTATAACATAANNNNNCTTATGTNNNNNNTGAAT]
[+] EMBL CF197250 [TTAATCAAGTTCTTGTGGTAAAGTGCTATCCTCGAGTTTCTGGTTGCTGTTTTTTTTAACAGATTGCTATATTTTGATTCTTCATTCATTTTTTATTCTCTGCAGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTACTGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGCAGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATCCTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTTTCCATNNNGGCTTNNNNNCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAACTTATGTNNNNNNNGCACAGTCCTCTNNNNTGTTGANNNNNTGNNNNNNNGTTCAATTTATTCTTATAACATAANNNNNCTTATGTNNNNNNTGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8427#0 TTCCGAGCCGGCCGCCAATTCGTGGTTCCTCCTCCTCACGGGCGGCGGCGACGGCGGCGA 60
consensus_8427#2 ------------------------------------------------------------
consensus_8427#1 --TAATATTGACAATTAATATAATTCTTTTAACTGATACATCTTGTGTTGAAAGAAGCCA 58
consensus_8427#0 CTACGGCGATGCGGCTGCTCTCCGGCGC-CTCTGCTTCCCGAATCCCCTGCCCCCTCCTC 119
consensus_8427#2 ------------------------------------------------------------
consensus_8427#1 T----GCTATCTGGATTCCCAGAGCTGTACTTTGTTCCTCAAGTCTTGCACATTACCTTT 114
consensus_8427#0 TCACTCGCCCGCGCGAGGGCAAGATGCTTGCCGGTCCCCGCCTCTGCCACCGCGTGCCGA 179
consensus_8427#2 ------------------------------------------------------------
consensus_8427#1 TCA---ACTCTAACAATATTTATGCGGTTTTCATAAATATTACCTATAAACAAATGCTAT 171
consensus_8427#0 GCGGCCTCCTCGTCAGCCGCGGCGGCCGCGGGCGACGGCGGCGCGCTGAAGCCGTGGTTG 239
consensus_8427#2 ------------------------------------------------------------
consensus_8427#1 TTGTTTAAGATACTCTATGCTTGAATATTAAACATGAGCGG-GTGCATATACTTATTTGA 230
consensus_8427#0 TTCGTCGGGCTCGGGAACCCCGGGAAAGTGTACCAAGGGACTCTCCACAACGTTGGATTC 299
consensus_8427#2 ------------------------------------------------------------
consensus_8427#1 AATTCTGAAGGTAGTGCTATCAAACATTCATAACAGAAAATAATATTTAG-GTCGTATTG 289
consensus_8427#0 GAGATGAT--TGATGTTATAGCAGAAGCTGAAGGTATATCCCTCAGCAGTATGCAGTTCA 357
consensus_8427#2 ------------------------------------------------------------
consensus_8427#1 GAGATGCCCCTATCATGCTGGCCAAGCCACAAACTTTTATGAATGCAAGTGGTGAGTCTG 349
consensus_8427#0 AGGCAATGGTAGGAAAAGGTCGTATTGGAGATGCCCCTATCATGCTGGCCAAGCCACAAA 417
consensus_8427#2 ------------------------TTAATCAAGTTCTTGTGGTAAAGTGCTATCCTCGAG 36
consensus_8427#1 TAAGTATACTGATTCCAAAACAACCTTCACTACTAGTTGTTCCTTCTTTTTTTTACCTTT 409
* * * *
consensus_8427#0 CTTTTATGAATGCAAGTGGTGAGTCTGTGGGGCAGTTGGTCTCATATTTCAAGATACCAC 477
consensus_8427#2 --TTTCTGGTTGC---TGTTTTTTTTAACAGATTGCTA-TATTTTGATTCTTCATTCATT 90
consensus_8427#1 TTCGTTTGACAAATCGAGTTATACAGGTGGGGCAGTTGGTCTCATATTTCAAGATACCAC 469
* ** * * * * * * * * *** ** *
consensus_8427#0 TTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTAC 537
consensus_8427#2 TT--TTATTCTCTGCAGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTAC 148
consensus_8427#1 TTAATCAAGTTCTTGTGATGTATGATGATCTAGACTTGCCCTTTGCAAAATTGCGTCTAC 529
** * * *** ********************************************
consensus_8427#0 TGCCGAAAGGTGGACATGGCGGTCATAATGGGGTGAGAAGCATTATCAACCATTTGAAGC 597
consensus_8427#2 TGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGC 208
consensus_8427#1 TGCCGAAAGGTGGACATGGCGGTCATAATGGGATGAGAAGCATTATCAACCATTTGAAGC 589
******************************** ***************************
consensus_8427#0 AGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATC 657
consensus_8427#2 AGAACCGTGATTTCCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATC 268
consensus_8427#1 AGAACCGTGATTTCCCACGTCTAAGAATTGGTATAGCGCTTCTCTCC------------T 637
******************************* ** * * * *
consensus_8427#0 CTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTT 717
consensus_8427#2 CTGCCAATTTTGTTCTCCGACCATTTAACAGAAAAGAACAGGAAGAGCTTGATTTCGCTT 328
consensus_8427#1 TTTTCAACTCAGNT-----ACCATGT--CTGAAAATA-----------------TTCNTT 673
* *** * * * ***** * * ***** * * **
consensus_8427#0 TCCATAGGGGCTTGGAGGCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAA 777
consensus_8427#2 TCCATNNNGGCTTNNNNNCAGTTAGAATAATGGCACTTGAGGGATTCAACAAGAGCGCAA 388
consensus_8427#1 GCGGNGATATCTTGCAGGCATT--GGACGAC--CACCTGGGAAG----ANGGGATCCTGN 725
* *** ** * * * * *** ** * * ** *
consensus_8427#0 CTTATGTGAACACCGCACAGTCCTCTGAAATGTTGAATAGATGATAAAGTGTTCAATTTA 837
consensus_8427#2 CTTATGTNNNNNNNGCACAGTCCTCTNNNNTGTTGANNNNNTGNNNNNNNGTTCAATTTA 448
consensus_8427#1 CAANTTTGGTCTCCGACCATTTAACAGAAAAGACAGGGAAGAGGGTTTAATTANAATGCT 785
* * * * ** * * * * * ***
consensus_8427#0 TTCTTATAACATAAAGATTCTTATGTCAGATCTGAATGTTTCCTATCCAGTAGACACTTG 897
consensus_8427#2 TTCTTATAACATAANNNNNCTTATGTNNNNNNTGAAT----------------------- 485
consensus_8427#1 TTC--------------------------------------------------------- 788
***
consensus_8427#0 CACACATGGTGGTCATTTTACTCTCAGGAAATCCTGAGCTCCCGAGGACGGAAGAGATTA 957
consensus_8427#2 ------------------------------------------------------------
consensus_8427#1 ------------------------------------------------------------
consensus_8427#0 TTTGAGCTGCAGCAACTTGGTACGGTGATTTTCACCAGCAGCTTAAATACAGGGAAGTTA 1017
consensus_8427#2 ------------------------------------------------------------
consensus_8427#1 ------------------------------------------------------------
consensus_8427#0 GAGACGTCACACTACATGCGTACTTCTGTTCCTTACATTTGTAGCCTTGTATTGATTTCA 1077
consensus_8427#2 ------------------------------------------------------------
consensus_8427#1 ------------------------------------------------------------
consensus_8427#0 AAAAACAATTGTAGCACTGTAATTTGGTGACCTGGTAGGGGGAGAGAGAGAGAGAAGCCT 1137
consensus_8427#2 ------------------------------------------------------------
consensus_8427#1 ------------------------------------------------------------
consensus_8427#0 TTTTGTCTTGGTAATCTATACTTTGGAAATCGTCAGCATACTGTTAAACAGGATTTCAGT 1197
consensus_8427#2 ------------------------------------------------------------
consensus_8427#1 ------------------------------------------------------------
consensus_8427#0 GTTCCACAGTACCTTGTCTCACTTTCTATATGTATATACAAGTGTTGATTAAGTAAT 1254
consensus_8427#2 ---------------------------------------------------------
consensus_8427#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||