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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1204 fasta sequence
[TCTCCCCGACCTCTCTCTTCACCAGAGCGGCGGCGGCGGCGGTCGGGAGCGGCGGCAGTGGTGATGGGGAGGTTGGGTTCTTGATTGGTGTCGGATTCTTGGTTGGTTGATGGGGTTTGTGAGGTGTGGCGCTGAGTTGGAAAGATCCGACATATACTCCGGCGCGGACGGGTCGGGTCTCGCCGGCGCCGCCGCGAGGGGGGAGATGGATCGGGACGACGAGTGGCTGCGCCGCGCGCTGGCGGAATTTGGAGGAGGAGGCGGCGGCGTGTGGGAGCTCGTGGATGCCGCGCTGGCCTGTGCCGCGCACGACCGCCCCGACGAGCTGCGCGCGCGGCGCGACGGTATCGTGGAGCGGCTCTACGCCCGGCGGCGGCTACAACAACTGAGCCGGAGGACGAGCTGCTGAGCTTGCTGCAGAGCCTGGCAGACATGGACATCCCGTACAAGGCGCTCCAGGAGACGGACATCGGACGGCATGTGAACGGTCTGCGCAAACATCCCTCCGGTGAAGTCCGGCTACTCGCCATCTCATCCTCGTCTTCCTCATCGGCCTCGCCATGGACCGGCTCCTCGGCGGCCGCGACGGCGGCATCGTGGCTCGAGTCCGGATCTGGCTCCGCGACGGGAAGCACCACGGTAGTCGCCGTTGCCGGCTCGACGGGCATCTCGGCCACCAGCTGCTTCTCGTTGCCATGGAATCCCTCCCCACGGTGGTAGAAGCCGCCGTACCTATACGCATCCCGCCGGTGGAGGCCGCCGCTCCTCCGGTGAAGAGAAAAGCCGGGGGGAGAGAGAGAGGTAAAGGAGAGAGAGGGGGAGGAAGAAGGGAAGGAGAGGGAGGATGATACGTGGGTCCTACAATATATATATTTTTTGTATGACATATGGGTCCCACATATTTTTTAATTTTTGTTTTTATTCTAATGCCACGTAAGTGCTACGTAGGAAAAGACTCGGTCAAAACCGTCACGTAGGCGCCATATCAGCCAAAACCAGGGATATTGTTTACACCGGTTTTGATAGTTGGAGGAGTCGATATACCCGGTTTTGTGGTTGGAGGATATGAATACTCGGACGATAGTTGAGGGAGTCAAATTATACTTTTTCCAAAAGTTAATGTACGTCCGTTTGCTTTTTTTGGCCCAGATGATACTTGTGTTGGGCCGTCATTTTTCTTTTCGTTTTATGGGCTAAACGCATG]
[+] EMBL AK108157 [TCTCCCCGACCTCTCTCTTCACCAGAGCGGCGGCGGCGGCGGTCGGGAGCGGCGGCAGTGGTGATGGGGAGGTTGGGTTCTTGATTGGTGTCGGATTCTTGGTTGGTTGATGGGGTTTGTGAGGTGTGGCGCTGAGTTGGAAAGATCCGACATATACTCCGGCGCGGACGGGTCGGGTCTCGCCGGCGCCGCCGCGAGGGGGGAGATGGATCGGGACGACGAGTGGCTGCGCCGCGCGCTGGCGGAATTTGGAGGAGGAGGCGGCGGCGTGTGGGAGCTCGTGGATGCCGCGCTGGCCTGTGCCGCGCACGACCGCCCCGACGAGCTGCGCGCGCGGCGCGACGGTATCGTGGAGCGGCTCTACGCCCGGCGGCGGCTACAACAACTGAGCCGGAGGACGAGCTGCTGAGCTTGCTGCAGAGCCTGGCAGACATGGACATCCCGTACAAGGCGCTCCAGGAGACGGACATCGGACGGCATGTGAACGGTCTGCGCAAACATCCCTCCGGTGAAGTCCGGCTACTCGCCATCTCATCCTCGTCTTCCTCATCGGCCTCGCCATGGACCGGCTCCTCGGCGGCCGCGACGGCGGCATCGTGGCTCGAGTCCGGATCTGGCTCCGCGACGGGAAGCACCACGGTAGTCGCCGTTGCCGGCTCGACGGGCATCTCGGCCACCAGCTGCTTCTCGTTGCCATGGAATCCCTCCCCACGGTGGTAGAAGCCGCCGTACCTATACGCATCCCGCCGGTGGAGGCCGCCGCTCCTCCGGTGAAGAGAAAAGCCGGGGGGAGAGAGAGAGGTAAAGGAGAGAGAGGGGGAGGAAGAAGGGAAGGAGAGGGAGGATGATACGTGGGTCCTACAATATATATATTTTTTGTATGACATATGGGTCCCACATATTTTTTAATTTTTGTTTTTATTCTAATGCCACGTAAGTGCTACGTAGGAAAAGACTCGGTCAAAACCGTCACGTAGGCGCCATATCAGCCAAAACCAGGGATATTGTTTACACCGGTTTTGATAGTTGGAGGAGTCGATATACCCGGTTTTGTGGTTGGAGGATATGAATACTCGGACGATAGTTGAGGGAGTCAAATTATACTTTTTCCAAAAGTTAATGTACGTCCGTTTGCTTTTTTTGGCCCAGATGATACTTGTGTTGGGCCGTCATTTTTCTTTTCGTTTTATGGGCTAAACGCATG]
consensusID : consensus_8446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 917 fasta sequence
[TGGCAATCAAGGACTTCTTGGAGGACGAAGACCAGTCGGAGGACGAGCTGCTGAGCTTGCTGCAGAGCCTGGCAGACATGGACATCACGTACAAGGCGCTCCAGGAGACTGACATCGGACGGCATGTGAATGGTCTGCGCAAACATCCCTCCGGTGAAGTCCGGCTACTTGTCAAGCAGCTCATCAGGAAGTGGAAGGAGATAGTGGACGATTGGGTGCGGTTACACAATTCCAGCGGTGACGCCAGCAACTCGATCATCACCGATGGCAACTCCCCGGAGAAAATCCAAGGCAAGAACCAGCAAAGCTCTCAGGTTTCAGAGTTCAAGTATTCCCCCAGCCCAAGTAGGCATAACAACTCAAGCTCAGAGAGGGTTAGCAATGGGATCGCGTCGATAGCAGCGACAAAACATAGAGCAAGCCCTGCGCCAGCGCATCATAATGCAAGGCAGATCAACAACACCCACCATTCTACTACTTCATCTTCTGCTCCAGCTAGGATGGTGAAGGAACAGAAGGACAGTCATCTTGACCTTGAAAGGCTGGACTCTGCGAGGAAGAGACTCCAGGAGAATTACCAGGAAGCACAAAATGCAAAAAAACAGAGGACGATTCAGGTGATGGACATCAATGAAATTCCGAAGCCGAAAAATAGAAATGCCTTCATCCGCAAGGGCAATGGGGGTGGGTTCCCAGCAAGGCACCGGTGACATTGCATTTTCTGGGAACCCAGATTTCAAATTTGTCTTTTACAAGTTGCACTAAGAAGAAAAGGAGAAAAAAAAGAGAGGTTTCTTTTCTTCATGTGCTATGTATTGGCTAGCCTCAACTTCAGTCTGATATGTTCCATGTACATGAGAGGGATGCTTATGGTTTTTGCAGGAGAAATAGAAGTTTAAAATGTTGCCAAAAAGCGG]
[+] EMBL AK070928 [TGGCAATCAAGGACTTCTTGGAGGACGAAGACCAGTCGGAGGACGAGCTGCTGAGCTTGCTGCAGAGCCTGGCAGACATGGACATCACGTACAAGGCGCTCCAGGAGACTGACATCGGACGGCATGTGAATGGTCTGCGCAAACATCCCTCCGGTGAAGTCCGGCTACTTGTCAAGCAGCTCATCAGGAAGTGGAAGGAGATAGTGGACGATTGGGTGCGGTTACACAATTCCAGCGGTGACGCCAGCAACTCGATCATCACCGATGGCAACTCCCCGGAGAAAATCCAAGGCAAGAACCAGCAAAGCTCTCAGGTTTCAGAGTTCAAGTATTCCCCCAGCCCAAGTAGGCATAACAACTCAAGCTCAGAGAGGGTTAGCAATGGGATCGCGTCGATAGCAGCGACAAAACATAGAGCAAGCCCTGCGCCAGCGCATCATAATGCAAGGCAGATCAACAACACCCACCATTCTACTACTTCATCTTCTGCTCCAGCTAGGATGGTGAAGGAACAGAAGGACAGTCATCTTGACCTTGAAAGGCTGGACTCTGCGAGGAAGAGACTCCAGGAGAATTACCAGGAAGCACAAAATGCAAAAAAACAGAGGACGATTCAGGTGATGGACATCAATGAAATTCCGAAGCCGAAAAATAGAAATGCCTTCATCCGCAAGGGCAATGGGGGTGGGTTCCCAGCAAGGCACCGGTGACATTGCATTTTCTGGGAACCCAGATTTCAAATTTGTCTTTTACAAGTTGCACTAAGAAGAAAAGGAGAAAAAAAAGAGAGGTTTCTTTTCTTCATGTGCTATGTATTGGCTAGCCTCAACTTCAGTCTGATATGTTCCATGTACATGAGAGGGATGCTTATGGTTTTTGCAGGAGAAATAGAAGTTTA ]
[+] EMBL AU225178 [ gccgctCAGCAAGGCACCGGTGACATTGCATTTTCTGGGAACCCAGATTTCAAATTTGTCTTTTACAAGTTGCACTAAGAAGAAAAGGAGAAAAAAAAGAGAGGTTTCTTTTCTTCATGTGCTATGTATTGGCTAGCCTCAACTTCAGTCTGATATGTTCCATGTACATGAGAGGGATGCTTATGGTTTTTGCAGGAGAAATAGAAGTTTAAAATGTTGCCAAAAAGCGG]
consensusID : consensus_8446#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 486 fasta sequence
[GACGACGACGGTGCGGAGGAGGTTGGGTTCTTGATCGGTGTCGGATTTTTGGTTGGTTGACGGGGTTTGTGAGGTGTGGCGGTGACTTGGAAAGATCCGATATATACTCCGGCGCCGCCGCGAGGGGAGATGGATCTGGGACGACGAGCGGCTCGGCCGCTGCTGCTGGCTGGCGTTTGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGTGTGGGAGCTCGTGGACGCCGCGCTGGCCTGTGCCGCACGCGACCGCCCCGACGAGCTGCGCGCGCGGCGCGACGGTATCGTGGAGCGGCTCTACGCCGCCGGCGGCGGCGGCGGCGGCAACTGCGGCGCGGCGGCGGCGACTACGCCGTCGCCGCGTGGGGCGGCGGTGGCGGAGGGTGAGGACGACGACGACGAGGCGGCGGCGGCGGCGGACGGCTCGAGATCAAGATCTTGGCAATCAAGGACTTCTTGGAGGACGAAGACCAGGTCCTCAAA]
[-] EMBL BI811578 [GACGACGACGGTGCGGAGGAGGTTGGGTTCTTGATCGGTGTCGGATTTTTGGTTGGTTGACGGGGTTTGTGAGGTGTGGCGGTGACTTGGAAAGATCCGATATATACTCCGGCGCCGCCGCGAGGGGAGATGGATCTGGGACGACGAGCGGCTCGGCCGCTGCTGCTGGCTGGCGTTTGGAG ]
[-] EMBL BI811586 [ GACGACGGTGCGGAGGAGG TGGGTTCTTGATCGGTGTCGGATTTTTGGTTGGTTGACGGGG TTGTGAGGTGTGGCGGTGACTTGGAAAGATCCGATATATACTCCGGCGCCGCCGCGAGGGGAGATGGATC GGGACGACGAGCGGCTCGGCCGC GC GCTGGC GGCGTTTGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGTGTGGGAGCTCGTGGACGCCGCGCTGGCCTGTGCCGCACGCGACCGCCCCGACGAGCTGCGCGCGCGGCGCGACGGTATCGTGGAGCGGCTCTACGCCGCCGGCGGCGGCGGCGGCGGCAACTGCGGCGCGGCGGCGGCGACTACGCCGTCGCCGCGTGGGGCGGCGGTGGCGGAGGGTGAGGACGACGACGACGAGGCGGCGGCGGCGGCGGACGGCTCGAGATCAAGATCTTGGCAATCAAGGACTTCTTGGAGGACGAAGACCAGGTCCTCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8446#0 TCTCCCCGACCTCTCTCTTCACCAGAGCGGCGGCGGCGGCGGTCGGGAGCGGCGGCAGTG 60
consensus_8446#2 --------------------------------------------------GACGACGACG 10
consensus_8446#1 ------------------------------------------------------------
consensus_8446#0 GTGATGGGGAGGTTGGGTTCTTGATTGGTGTCGGATTCTTGGTTGGTTGATGGGGTTTGT 120
consensus_8446#2 GTGCGGAGGAGGTTGGGTTCTTGATCGGTGTCGGATTTTTGGTTGGTTGACGGGGTTTGT 70
consensus_8446#1 ------TGGCAATCAAGGACTTCTTGGAGGACGAAGACC-AGTCGGAGGACGAG--CTGC 51
** * * *** * * * ** * ** ** ** * * **
consensus_8446#0 GAGGTGTGGCGCTGAGTTGGAAAGATCCGACATATACTCCGGCGCGGACGGGTCGGGTCT 180
consensus_8446#2 GAGGTGTGGCGGTGACTTGGAAAGATCCGATATATACTCCGGCGCCGCCGCGAGGGGA-- 128
consensus_8446#1 TGAGCTTGCTGCAGAGCCTGGCAGAC---ATGGACATCACGTACAAGGCGCTCCAGGA-- 106
* ** * ** * *** * * * ** * ** **
consensus_8446#0 CGCCGGCGCCGCCGCGAGGGGGGAGATGGATCGGGACGACGAGTGGCTGCGCCGCGCGCT 240
consensus_8446#2 -GATGGATCTGGGACGACGAGCG-GCTCGGCCGCTGCTGCTGGCTG--GCGTTTGGAGGC 184
consensus_8446#1 -GACTGACATCGGACGGCATGTG-AATGGTCTGCGCAAAC--ATCCCTCCGGTGAAGTCC 162
* * ** * * * * * * **
consensus_8446#0 GGCGGAATTTGGAGGAGGAGGCGGCGGCGTGTG-GGAGCTCGTGGATGCC---GCGCTGG 296
consensus_8446#2 GGCGG----CGGCGGCGGCGGCGGCGGCGTGTG-GGAGCTCGTGGACGCC---GCGCTGG 236
consensus_8446#1 GGCTACTTGTCAAGCAGCTCATCAGGAAGTGGAAGGAGATAGTGGACGATTGGGTGCGGT 222
*** * * * *** **** * ***** * * ** *
consensus_8446#0 CCTGTGCCGCGCACGACCGCCCCGACGAGCTGCGCGCGCGGCGCGACGGTATCGTGGAGC 356
consensus_8446#2 CCTGTGCCGCACGCGACCGCCCCGACGAGCTGCGCGCGCGGCGCGACGGTATCGTGGAGC 296
consensus_8446#1 TACACAATTCCAGCGGTGACGCCAGCAACTCGATCATCACCGATGGCAACTCCCCGGAGA 282
* ** * ** * * * * * * * ****
consensus_8446#0 GGCTCTACGCC-----CGGCGGCGGCTACAACAACTGAGCCGGAGGACGAGCTGCTGAGC 411
consensus_8446#2 GGCTCTACGCCGCCGGCGGCGGCGGCGGCGGCAACTGCGGCGCGGCGGCGGCGACTACGC 356
consensus_8446#1 AAATCCAAGGCAAGAACCAGCAAAGCTCTCAGGTTTCAGAGTTCAAGTATTCCCCCAGCC 342
** * * * * ** * * * * *
consensus_8446#0 --TTGCTGCAGAGCCTGGCAGACATGGACATCCCGTACAAGGCGCTCCAGGAGACGG--A 467
consensus_8446#2 CGTCGCCGCGTGGGGCGGCGGTGGCGGAGGGTGAGGACGACGACGACGAGGCGGCGGCGG 416
consensus_8446#1 CAAGTAGGCATAACAACTCAAGCTCAGAGAGGGTTAGCAATGGGATCGCGTCGATAGCAG 402
** * ** * * * * * * *
consensus_8446#0 CATCGGACGGCATGTGAAC--GGTCTGCGCAAACATCCCTCCGGTGAAGTCCGGCTACTC 525
consensus_8446#2 CGGCGGACGGCTCGAGATCAAGATCTTGGCAATCAAGGACTTCTTGGAGGACGAAGACCA 476
consensus_8446#1 CGACAAA--ACATA-GAGCAAGCCCTGCGCCAGCG-CATCATAATGCAAGGCAGATCAAC 458
* * * * ** * * ** ** * * ** * *
consensus_8446#0 GCCATCTCATCCTCGTCTTCCTCATCGGCCTCGCCATGGACCGGCTCCTCGGCGGCCGCG 585
consensus_8446#2 GGT-CCTCAAA------------------------------------------------- 486
consensus_8446#1 AACACCCACCATTCTACTACTTCATCTTCTGCTCCA--GCTAGGATGGTGAAGGAACAGA 516
*
consensus_8446#0 ACGGCGG-CATCGTGGCTCGAGTCCGGATCTGGCTCCGCGACGGGAAG-CACCACGGTAG 643
consensus_8446#2 ------------------------------------------------------------
consensus_8446#1 AGGACAGTCATCTTGACCTTGAA--AGGCTGGACTCTGCGAGGAAGAGACTCCAGGAGAA 574
consensus_8446#0 TCGCCGT----TGCCGGCTCGACGGGCATCTCGGCCACCAGCTGCTTCTCGTTGCCATGG 699
consensus_8446#2 ------------------------------------------------------------
consensus_8446#1 TTACCAGGAAGCACAAAATGCAAAAAAACAGAGGACGATTCAGGTGATGGACATCAATGA 634
consensus_8446#0 AATCCCTCCCCACGGTGGTAGAAGCCGCCGTACCTATACGCATCCCGCCGGTGGAGGCC- 758
consensus_8446#2 ------------------------------------------------------------
consensus_8446#1 AATTCCGAAGCCGAAAAATAGAAATGCCTTCATCCGCAAGGGCAATGGGGGTGGGTTCCC 694
consensus_8446#0 GCCGCTCCTCCGGTGAAGAGAAAAGCCGGGGGGAGAGAGAGAGGTAAAGGAGAGAGAGGG 818
consensus_8446#2 ------------------------------------------------------------
consensus_8446#1 AGCAAGGCACCGGTGACATTGCATTTTCTGGGAACCCAGATT--TCAAATTTGTCTTTTA 752
consensus_8446#0 GGAGGAAGAAGGGAAGGAGAGGGAGGATGATACGTGGGTCCTACAATATATATATTTTTT 878
consensus_8446#2 ------------------------------------------------------------
consensus_8446#1 CAAGTTGCACTAAGAAGAAAAGGAGAAAAAAAAGAGAGGTTTCTTTTCTTCATGTGCTAT 812
consensus_8446#0 GTATGACATATGGGTCCCACATATTTTTTAATTTTTGTTTTTATTCTAATGCCACGTAAG 938
consensus_8446#2 ------------------------------------------------------------
consensus_8446#1 GTATTGGCTAGCCTCAACTTCAGTCTGATATGTTCCATGTACATGAGAGGGATGCTTATG 872
consensus_8446#0 TGCTACGTAGGAAAAGACTCGGTCAAAACCGTCACGTAGGCGCCATATCAGCCAAAACCA 998
consensus_8446#2 ------------------------------------------------------------
consensus_8446#1 GTTTTTGCAGGAGAAATAGAAGTTTAAAATGTTGCCAAAAAGCGG--------------- 917
consensus_8446#0 GGGATATTGTTTACACCGGTTTTGATAGTTGGAGGAGTCGATATACCCGGTTTTGTGGTT 1058
consensus_8446#2 ------------------------------------------------------------
consensus_8446#1 ------------------------------------------------------------
consensus_8446#0 GGAGGATATGAATACTCGGACGATAGTTGAGGGAGTCAAATTATACTTTTTCCAAAAGTT 1118
consensus_8446#2 ------------------------------------------------------------
consensus_8446#1 ------------------------------------------------------------
consensus_8446#0 AATGTACGTCCGTTTGCTTTTTTTGGCCCAGATGATACTTGTGTTGGGCCGTCATTTTTC 1178
consensus_8446#2 ------------------------------------------------------------
consensus_8446#1 ------------------------------------------------------------
consensus_8446#0 TTTTCGTTTTATGGGCTAAACGCATG 1204
consensus_8446#2 --------------------------
consensus_8446#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||