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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1587 fasta sequence
[ACCGCGATGCACCGCTTCGCCTCCGCCTCCTCCCTCCCGCCGCCGGCGCCGGCGACGGCGGCGGCCGCGGCGGCGCAGGCTGCGGCTCTCAGGTTCGGCTCCGCCGCCACCACTCGTGTCCCCCGAGCGCTAGCCCTGACCGCCTCCACTTGCCCATGGCACCGCCGACACCTCTGCTCCTCCTCCTCCTCCTCCTCGTCGGCGGCGGCTGCGGCTGCTACGGCGGCGGCGGTGGAGGAGGCGCGGCAGGGGCGGAAGCAGCTGGGCGCGACGACGCAGCTCTACGAGTACCTCCTCGCCAACGTCCGCGAGCACCCGGTTCTCAAGGAGCTTCGTGAGGAGACGGCGGCCATGAGAGGGAGCCAAATGCAGGTTTCACCTGCGCAGGCTCAGCTTCTAGCAATGCTTGCGCAAATTCTTGGGGCTCAACGATGCATTGAAGTCGGAGTCTATACAGGATATTCGTCGTTAGCTGTAGCACTAGCTCTTCCTGAATCAGGTCGTTTGGTTGCTTGTGAGAGGGATGAAAGATGCCTAGAAGTTGCCAAGAAATACTATCAGCGCTCTGGTGTTGCACACAAGGTTGATGTCAAACATGCTTTAGCTGCGGATTCCCTAAAGTTACTAATTGATGGTGGTGAGGTTAACAGTTATGACTTTGCATTCGTTGATGCAGACAAGAGAATGTATGAGGAGTATTATGAACTTCTACTTAAGCTAGTAAGAGTTGGTGGTTTGATTGTAATAGACAATGTCCTTTGGTATGGTAGAGTTGCTGATCCACTAGTGAATGATCGAAAGACAATTAGTATAAGGAACTTCAACAAGAAACTTCTGGAGGATAATCGTGTCAGCATCAGCATGGTGCCAATCGGGGACGGGATGACAATTTGTCGGAAGCTAGTAGATACCTGACTGAACAACATACTCTTTCTAGATATGGATTTTGGGCGTGTGCCTTTTTGGCTTCTCGCGACATTATCTTCAAAGGGTATCTATAGAAGGATGCAGGTAATGATGTTCGTGGCCTTTTGTGATTCTGTTAAGTTTGGGATATGGAGGTTCTGTCTCGGAATGAGGGGGCAACAATACTAGTGGCTTCATTCAGGCGGTACTTGTTACTAATTCTTTAAGTCCGGGGTTAAATCCCTAAGTCTGACCTTAATTGGTTGTACTTGGCAATGGATTTCTTTTTTTTTTGAAGGCATTGTTTGGAGTTCACAGAATTTCCCTAGGTGAAAACCTATGGTCTGATTTTAGTTGATTGGAACATGACAATGATGACGCGTGCACGCGTCATTTCCTCATTGGAGGCATTGTTTTAAAGGGAGTCCGTATGATAGTTTAAGTGTTGTTTTGGTGGAGATAAGAGATGAAGATTACTTGTGGTTGTAGTTCGCTGTGGCACGGTTGTAATAGTTGTGTCGCTTTTTTTCCTTTTCTTTTATAATATTGATAGGCTGTGTGCATCCTAGCTATGCAGAGGCCGAGGGTGGTCTTAGAAAAATTGTATCCTCTCGATGTAATTGTTTAAGATCAATAAAGCTCTCTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGA]
[+] EMBL AK063541 [ACCGCGATGCACCGCTTCGCCTCCGCCTCCTCCCTCCCGCCGCCGGCGCCGGCGACGGCGGCGGCCGCGGCGGCGCAGGCTGCGGCTCTCAGGTTCGGCTCCGCCGCCACCACTCGTGTCCCCCGAGCGCTAGCCCTGACCGCCTCCACTTGCCCATGGCACCGCCGACACCTCTGCTCCTCCTCCTCCTCCTCCTCGTCGGCGGCGGCTGCGGCTGCTACGGCGGCGGCGGTGGAGGAGGCGCGGCAGGGGCGGAAGCAGCTGGGCGCGACGACGCAGCTCTACGAGTACCTCCTCGCCAACGTCCGCGAGCACCCGGTTCTCAAGGAGCTTCGTGAGGAGACGGCGGCCATGAGAGGGAGCCAAATGCAGGTTTCACCTGCGCAGGCTCAGCTTCTAGCAATGCTTGCGCAAATTCTTGGGGCTCAACGATGCATTGAAGTCGGAGTCTATACAGGATATTCGTCGTTAGCTGTAGCACTAGCTCTTCCTGAATCAGGTCGTTTGGTTGCTTGTGAGAGGGATGAAAGATGCCTAGAAGTTGCCAAGAAATACTATCAGCGCTCTGGTGTTGCACACAAGGTTGATGTCAAACATGCTTTAGCTGCGGATTCCCTAAAGTTACTAATTGATGGTGGTGAGGTTAACAGTTATGACTTTGCATTCGTTGATGCAGACAAGAGAATGTATGAGGAGTATTATGAACTTCTACTTAAGCTAGTAAGAGTTGGTGGTTTGATTGTAATAGACAATGTCCTTTGGTATGGTAGAGTTGCTGATCCACTAGTGAATGATCGAAAGACAATTAGTATAAGGAACTTCAACAAGAAACTTCTGGAGGATAATCGTGTCAGCATCAGCATGGTGCCAATCGGGGACGGGATGACAATTTGTCGGAAGCTAGTAGATACCTGACTGAACAACATACTCTTTCTAGATATGGATTTTGGGCGTGTGCCTTTTTGGCTTCTCGCGACATTATCTTCAAAGGGTATCTATAGAAGGATGCAGGTAATGATGTTCGTGGCCTTTTGTGATTCTGTTAAGTTTGGGATATGGAGGTTCTGTCTCGGAATGAGGGGGCAACAATACTAGTGGCTTCATTCAGGCGGTACTTGTTACTAATTCTTTAAGTCCGGGGTTAAATCCCTAAGTCTGACCTTAATTGGTTGTACTTGGCAATGGATTTCT ]
[+] EMBL CB649583 [ GCCTCCGCCTCCTCCCTCCCGCCGCCGGCGCCGGCGACGGCGGCGGCCGCGGCGGCGCAGGCTGCGGCTCTCAGGTTCGGCTCCGCCGCCACCACTCGTGTCCCCCGAGCGCTAGCCCTGACCGCCTCCACTTGCCCATGGCACCGCCGACACCTCTGCTCCTCCTCCTCCTCCTCCTCGTCGGCGGCGGCTGCGGCTGCTACGGCGGCGGCGGTGGAGGAGGCGCGGCAGGGGCGGAAGCAGCTGGGCGCGACGACGCAGCTCTACGAGTACCTCCTCGCCAACGTCCGCGAGCACCCGGTTCTCAAGGAGCTTCGTGAGGAGACGGCGGCCATGAGAGGGAGCCAAATGCAGGTTTCACCTGCGCAGGCTCAGCTTCTAGCAATGCTTGCGCAAATTCTTGGGGCTCAACGATGCATTGAAGTCGGAGTCTATACAGGATATTCGTCGTTAGCTGTAGCACTAGCTCTTCCTGAATCAGGTCGTTTGGTTGCTTGTGAGAGGGATGAAAGATGCCTAGAAGTTGCCAAGAAATACTATCAGCGCTCTGGTGTTGCACACAAGGTTGATGTCAAACATGCTTTAGCTGCGGATTCCCTAAAGTTACTAATTGATGGTGGTGAGGTTAACAGTTATGACTTTGCATTCGTTGATGCAGACAAGAGAATGTATGAGGAGTATTATGAACTTCTACTTAAGCTAGTAAGAGTTGGAGGTTTGATTGTAATAGACAATGTCCTTTG ]
[-] EMBL CB649584 [ CATGGTGCCAATCGGGGACGGGATGACAATTTGTCGGAAGCTAGTAGATACCTGACTGAACAACATACTCTTTCTAGATATGGATTTTGGGCGTGTGCCTTTTTGGCTTCTCGCGACATTATCTTCAAAGGGTATTTATAGAAGGATGCAGGTAATGATGTTCGTGGCCTTTTGTGATTCTGTTAAGTTTGGGATATGGAGGTTCTGTCTCGGAATGAGGGGGCAACAATACTAGTGGCTTCATTCAGGCGGTACTTGTTACTAATTCTTTAAGTCCGGGGTTAAATCCCTAAGTCTGCCCTTAATTGGTTGTACTTGGCAATGGATTTCTTTTTTTTTTGAAGGCATTGTTTGGAGTTCACAGAATTTCCCTAGGTGAAAACCTATGGTCTGATTTTAGTTGATTGGAACATGACAATGATGACGCGTGCACGCGTCATTTCCTCATTGGAGGCATTGTTTTAAAGGGAGTCCGTATGATAGTTTAAGTGTTGTTTTGGTGGAGATAAGAGATGAAGATTACTTGTGGTTGTAGTTCGCTGTGGCACGGTTGTAATAGTTGTGTCGCTTTTTTTCCTTTTCTTTTATAATATTGATAGGCTGTGTGCATCCTAGCTATGCAGAGGCCGAGGGTGGTCTTAGAAAAATTGTATCCTCTCGATGTAATTGTTTAAGATCAATAAAGCTCTCTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGA]
[-] EMBL CA761125 [ GGGATGACAATTTGTCGGAAGCTAGTAGATACCTGACTGAACAACATACTCTTTCTAGATATGGATTTTGGGCGTGTGCCTTTTTGGCTTCTCGCGACATTATCTTCAAAGGGTATCTATAGAAGGATGCAGGTAATGATGTTCGTGGCCTTTTGTGATTTTGTTAAGTTTGGGATATGGAGGTTCTGTCTCGGAATGAGGGGGCAACAATACTAGTGGCTTCATTCAGGCGGTACTTGTTACTAATTCTTTAAGTCCGGGGTTAAATCCCTAAGTCTGACCTTAATTGGTTGTACTTGGCAATGGATTTCTTTCTTTCTTGAAGGCATTGTCTGGAGTTCACAGAATTTCCCTAGGTGAAAACCTATGGTCTGATCTTAGTTGATTGGAACATGACAATGATGACGCGTGCACGCGTCATTTCCTCATTGGAGGCATTGTTTTAAAGGGAGTCCGTATGATAGTCTAAGTGTTGTTTTGGTGGAGATAAGAGATGAAGATTACTTGTGGTTGTAGTTCGCTGTGGCACGGTTGTAATAGTTGTGTCGCTTTTTTTCCTTTTCTTTTATAATATTGATAGGCTGTGTGCATCCTAGCTATGCAGAGGCCGAGGGTGGTCTTAGAAAAATTGTATCCTCTCGATGTAATTGTTTAAGATCAATAAAACTCTCTTTATCTAAAAAAAAAAAAAAAA ]
consensusID : consensus_8450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 830 fasta sequence
[TAGACAATGTCCTTGGGTATGGTAGAGTTGCTGATCCACTAGAAATTATCTGGCACATTTTTCCTTAGGTGAATGATCGAAAGACAATTAGTATAAGGAACTTCAACAAGAAACTTCTGGAGGATAATCGTGTCAGCATCAGCATGGTGCCAATCGGGGACGGGATGACAATTTGTCGGAAGCTAGTAGATACCTGACTGAACAACATACTCTTTCTAGATATGGATTTTGGGCGTGTGCCTTTTTGGCTTCTCGCGACATTATCTTCAAAGGGTATCTATAGAAGGATGCAGGTAATGATGTTCGTGGCCTTTTGTGATTTTGTTAAGTTTGGGATATGGAGGTTCTGTCTCGGAATGAGGGGGCAACAATACTAGTGGCTTCATTCAGGCGGTACTTGTTACTAATTCTTTAAGTCCGGGGTTAAATCCCTAAGTCTGACCTTAATTGGTTGTACTTGGCAATGGATTTCTTTCTTTCTTGAAGGCATTGTCTGGAGTTCACAGAATTTCCCTAGGTGAAAACCTATGGTCTGATCTTAGTTGATTGGAACATGACAATGATGACGCGTGCACGCGTCATTTCCTCATTGGAGGCATTGTTTTAAAGGGAGTCCGTATGATAGTCTAAGTGTTGTTTTGGTGGAGATAAGAGATGAAGATTACTTGTGGTTGTAGTTCGCTGTGGCACGGTTGTAATAGTTGTGTCGCTTTTTTTCCTTTTCTTTTATAATATTGATAGGCTGTGTGCATCCTAGCTATGCAGAGGCCGAGGGTGGTCTTAGAAAAATTGTATCCTCTCGATGTAATTGTTTAAGATCAATAAAACTC]
[-] EMBL CB620983 [TAGACAATGTCCTTGGGTATGGTAGAGTTGCTGATCCACTAGAAATTATCTGGCACATTTTTCCTTAGGTGAATGATCGAAAGACAATTAGTATAAGGAACTTCAACAAGAAACTTCTGGAGGATAATCGTGTCAGCATCAGCATGGTGCCAATCGGGGACGGGATGACAATTTGTCGGAAGCTAGTAGATACCTGACTGAACAACATACTCTTTCTAGATATGGATTTTGGGCGTGTGCCTTTTTGGCTTCTCGCGACATTATCTTCAAAGGGTATCTATAGAAGGATGCAGGTAATGATGTTCGTGGCCTTTTGTGATTTTGTTAAGTTTGGGATATGGAGGTTCTGTCTCGGAATGAGGGGGCAACAATACTAGTGGCTTCATTCAGGCGGTACTTGTTACTAATTCTTTAAGTCCGGGGTTAAATCCCTAAGTCTGACCTTAATTGGTTGTACTTGGCAATGGATTTCTTTCTTTCTTGAAGGCATTGTCTGGAGTTCACAGAATTTCCCTAGGTGAAAACCTATGGTCTGATCTTAGTTGATTGGAACATGACAATGATGACGCGTGCACGCGTCATTTCCTCATTGGAGGCATTGTTTTAAAGGGAGTCCGTATGATAGTCTAAGTGTTGTTTTGGTGGAGATAAGAGATGAAGATTACTTGTGGTTGTAGTTCGCTGTGGCACGGTTGTAATAGTTGTGTCGCTTTTTTTCCTTTTCTTTTATAATATTGATAGGCTGTGTGCATCCTAGCTATGCAGAGGCCGAGGGTGGTCTTAGAAAAATTGTATCCTCTCGATGTAATTGTTTAAGATCAATAAAACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8450#0 ACCGCGATGCACCGCTTCGCCTCCGCCTCCTCCCTCCCGCCGCCGGCGCCGGCGACGGCG 60
consensus_8450#1 ------------------------------------------------------------
consensus_8450#0 GCGGCCGCGGCGGCGCAGGCTGCGGCTCTCAGGTTCGGCTCCGCCGCCACCACTCGTGTC 120
consensus_8450#1 ------------------------------------------------------------
consensus_8450#0 CCCCGAGCGCTAGCCCTGACCGCCTCCACTTGCCCATGGCACCGCCGACACCTCTGCTCC 180
consensus_8450#1 ------------------------------------------------------------
consensus_8450#0 TCCTCCTCCTCCTCCTCGTCGGCGGCGGCTGCGGCTGCTACGGCGGCGGCGGTGGAGGAG 240
consensus_8450#1 ------------------------------------------------------------
consensus_8450#0 GCGCGGCAGGGGCGGAAGCAGCTGGGCGCGACGACGCAGCTCTACGAGTACCTCCTCGCC 300
consensus_8450#1 ------------------------------------------------------------
consensus_8450#0 AACGTCCGCGAGCACCCGGTTCTCAAGGAGCTTCGTGAGGAGACGGCGGCCATGAGAGGG 360
consensus_8450#1 ------------------------------------------------------------
consensus_8450#0 AGCCAAATGCAGGTTTCACCTGCGCAGGCTCAGCTTCTAGCAATGCTTGCGCAAATTCTT 420
consensus_8450#1 ------------------------------------------------------------
consensus_8450#0 GGGGCTCAACGATGCATTGAAGTCGGAGTCTATACAGGATATTCGTCGTTAGCTGTAGCA 480
consensus_8450#1 ------------------------------------------------------------
consensus_8450#0 CTAGCTCTTCCTGAATCAGGTCGTTTGGTTGCTTGTGAGAGGGATGAAAGATGCCTAGAA 540
consensus_8450#1 ------------------------------------------------------------
consensus_8450#0 GTTGCCAAGAAATACTATCAGCGCTCTGGTGTTGCACACAAGGTTGATGTCAAACATGCT 600
consensus_8450#1 ------------------------------------------------------------
consensus_8450#0 TTAGCTGCGGATTCCCTAAAGTTACTAATTGATGGTGGTGAGGTTAACAGTTATGACTTT 660
consensus_8450#1 ------------------------------------------------------------
consensus_8450#0 GCATTCGTTGATGCAGACAAGAGAATGTATGAGGAGTATTATGAACTTCTACTTAAGCTA 720
consensus_8450#1 ----------------------------------------------------------TA 2
**
consensus_8450#0 GTAAGAGTTGGTGGTTTGATTGTAATAGACAATGTCCTTTGGTATGGTAGAGTTGCTGAT 780
consensus_8450#1 GACAATGTCCTTGGGTATGGTAGAGTTGCTGATCCACTAGAAATTATCTGGCACATTTTT 62
* * ** *** * * * * * ** ** * * * *
consensus_8450#0 CCACTAGTGAATGATCGAAAGACAATTAGTATAAGGAACTTCAACAAGAAACTTCTGGAG 840
consensus_8450#1 CCTTAGGTGAATGATCGAAAGACAATTAGTATAAGGAACTTCAACAAGAAACTTCTGGAG 122
** ******************************************************
consensus_8450#0 GATAATCGTGTCAGCATCAGCATGGTGCCAATCGGGGACGGGATGACAATTTGTCGGAAG 900
consensus_8450#1 GATAATCGTGTCAGCATCAGCATGGTGCCAATCGGGGACGGGATGACAATTTGTCGGAAG 182
************************************************************
consensus_8450#0 CTAGTAGATACCTGACTGAACAACATACTCTTTCTAGATATGGATTTTGGGCGTGTGCCT 960
consensus_8450#1 CTAGTAGATACCTGACTGAACAACATACTCTTTCTAGATATGGATTTTGGGCGTGTGCCT 242
************************************************************
consensus_8450#0 TTTTGGCTTCTCGCGACATTATCTTCAAAGGGTATCTATAGAAGGATGCAGGTAATGATG 1020
consensus_8450#1 TTTTGGCTTCTCGCGACATTATCTTCAAAGGGTATCTATAGAAGGATGCAGGTAATGATG 302
************************************************************
consensus_8450#0 TTCGTGGCCTTTTGTGATTCTGTTAAGTTTGGGATATGGAGGTTCTGTCTCGGAATGAGG 1080
consensus_8450#1 TTCGTGGCCTTTTGTGATTTTGTTAAGTTTGGGATATGGAGGTTCTGTCTCGGAATGAGG 362
******************* ****************************************
consensus_8450#0 GGGCAACAATACTAGTGGCTTCATTCAGGCGGTACTTGTTACTAATTCTTTAAGTCCGGG 1140
consensus_8450#1 GGGCAACAATACTAGTGGCTTCATTCAGGCGGTACTTGTTACTAATTCTTTAAGTCCGGG 422
************************************************************
consensus_8450#0 GTTAAATCCCTAAGTCTGACCTTAATTGGTTGTACTTGGCAATGGATTTCTTTTTTTTTT 1200
consensus_8450#1 GTTAAATCCCTAAGTCTGACCTTAATTGGTTGTACTTGGCAATGGATTTCTTTCTTTCTT 482
***************************************************** *** **
consensus_8450#0 GAAGGCATTGTTTGGAGTTCACAGAATTTCCCTAGGTGAAAACCTATGGTCTGATTTTAG 1260
consensus_8450#1 GAAGGCATTGTCTGGAGTTCACAGAATTTCCCTAGGTGAAAACCTATGGTCTGATCTTAG 542
*********** ******************************************* ****
consensus_8450#0 TTGATTGGAACATGACAATGATGACGCGTGCACGCGTCATTTCCTCATTGGAGGCATTGT 1320
consensus_8450#1 TTGATTGGAACATGACAATGATGACGCGTGCACGCGTCATTTCCTCATTGGAGGCATTGT 602
************************************************************
consensus_8450#0 TTTAAAGGGAGTCCGTATGATAGTTTAAGTGTTGTTTTGGTGGAGATAAGAGATGAAGAT 1380
consensus_8450#1 TTTAAAGGGAGTCCGTATGATAGTCTAAGTGTTGTTTTGGTGGAGATAAGAGATGAAGAT 662
************************ ***********************************
consensus_8450#0 TACTTGTGGTTGTAGTTCGCTGTGGCACGGTTGTAATAGTTGTGTCGCTTTTTTTCCTTT 1440
consensus_8450#1 TACTTGTGGTTGTAGTTCGCTGTGGCACGGTTGTAATAGTTGTGTCGCTTTTTTTCCTTT 722
************************************************************
consensus_8450#0 TCTTTTATAATATTGATAGGCTGTGTGCATCCTAGCTATGCAGAGGCCGAGGGTGGTCTT 1500
consensus_8450#1 TCTTTTATAATATTGATAGGCTGTGTGCATCCTAGCTATGCAGAGGCCGAGGGTGGTCTT 782
************************************************************
consensus_8450#0 AGAAAAATTGTATCCTCTCGATGTAATTGTTTAAGATCAATAAAGCTCTCTTTTTTTAAA 1560
consensus_8450#1 AGAAAAATTGTATCCTCTCGATGTAATTGTTTAAGATCAATAAAACTC------------ 830
******************************************** ***
consensus_8450#0 AAAAAAAAAAAAAAAAAAAAAAAAGGA 1587
consensus_8450#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||