These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1061 fasta sequence [AAAATAAAATCTTCCTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTCGCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTGGCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGAGCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGGAATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGCCTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAAATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCAGATACCCTCCAGTGAGATGGCTGAATTCTGGTTGATGGAACACGGGTTGTTATCTCCCGAAAGAGCAAAGAAAGCATACGAAAAAAAGCAAAAGCGGCAACAGCAAATACGATCAGGAACACCAATTAAACCCAGCGTAAAGAAAGACAAACCGGAAAGTTCAAAAAAACCAAGCTCATATAATAGTTCAGATTCAAAGGCAAAAAAAAGAGTCGATTACAGCGATGACGATGACGATTTCATTGTAAAACTGAAGAGATCCAGGGGATGATAGTATTCAGATACCAGCATATTCCTATAGCACCAAGGCTAATAAACAGGTGCTGCTCTGAGGTTTCCATGGCAATGGTAACAACCAAATGGGTTCATGATGATTCTGGTGGAACAACATTTCTGTTTATTGTCAATATTGGAGTAGAAAGAAAAATGGAGATCCTTTACAATGATAAAATAAAGTCATATTGGCAGCATTGTGTCTTATGTAAAGACAGGCACTTTGTGGAGCTAAAGATAAATAGGTTTCCCTTTGCTTTGCTGGTGTCGTTGTATTTTGCGATTTGTACCTGCACGGTACCGTACCTTACCTTTGGTAGATAAGATTTGGTTTGTTGCATTGCTGTTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK107887 [AAAATAAAATCTTCCTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTCGCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTGGCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGAGCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGGAATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGCCTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAAATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCAGATACCCTCCAGTGAGATGGCTGAATTCTGGTTGATGGAACACGGGTTGTTATCTCCCGAAAGAGCAAAG ] [+] EMBL AK108209 [ ATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTCGCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTGGCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGAGCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGGAATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGCCTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAAATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCAGATACCCTCCAGTGAGATGGCTGAATTCTGGTTGATGGAACACGGGTTGTTATCTCCCGAAAGAGCAAAGAAAGCATACGAAAAAAAGCAAAAGCGGCAACAGCAAATACGATCAGGAACACCAATTAAACCCAGCGTAAAGAAAGACAAACCGGAAAGTTCAAAAAAACCAAGCTCATATAATAGTTCAGATTCAAAGGCAAAAAAAAGAGTCGATTACAGCGATGACGATGACGATTTCATTGTAAAACTGAAGAGATCCAGGGGATGATAGTATTCAGATACCAGCATATTCCTATAGCACCAAGGCTAATAAACAGGTGCTGCTCTGAGGTTTCCATGGCAATGGTAACAACCAAATGGGTTCATGATGATTCTGGTGGAACAACATTTCTGTTTATTGTCAATATTGGAGTAGAAAGAAAAATGGAGATCCTTTACAATGATAAAATAAAGTCATATTGGCAGCATTGTGTCTTATGTAAAGACAGGCACTTTGTGGAGCTAAAGATAAATAG ] [-] EMBL CA761233 [ agagGACGAGA CAAGGGGATGATAGTTTTCAGATACCAGCATATTCCTATAGCACCAAGGCTAATAAACAGGTGCTGCTTTGAGGTTTCCATGGCAATGGTAACAACCAAATGGGTTCATGATGATTTTGGTGGAACAACATTTCTGTTTATTGTCAATATTGGAGTAGAAAGAAAAATGGAGATCCTTTACAATGATAAAATAAAGTCATATTGGCAGCATTGTGTTTTATGTAAAGACAGGCACTTTGTGGAGCTAAAGATAAATAGGTTTCCCTTTGCTTTGCTGGTGTCGTTGTATTTTGCGATTTGTACCTGCACGGTACCGTACCTTACCTTTGGTAGATAAGATTTGGTTTGTTGCATTGCTGTTAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA765245 [ TTTAGATACCAGCATATTCCTATAGCACCAAGGCTAATAAACAGGTGCTGCTCTGAGGTTTCCATGGCAATGGTAACAACCAAATGGGTTCATGATGATTCTGGTGGAACGACATTTCTGTTTATTGTCAATATTGGAGTAGAAAGAAAAATGGAGATCCTTTACAATGATAAAATAAAGTCATATTGGCAGCATTGTGTCTTATGTAAAGACAGGCACTTTGTGGAGCTAAAGATAAATAGGT ] consensusID : consensus_8457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 924 fasta sequence [CTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTCGCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTGGCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGAGCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGGAATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGCCTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAAATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCAGATACCCTCCAGTGAGATGGCTGAATTCTGGTACGCACAAATTTTTACACCTTTTAGCGTAATATATAAATTTTCTTCTATCTCAACTGTTAGAAATACTCCTACCCCTATATGGAATATATATACAGTAGTAGTACATACTAGTGACATTCAGGTGTCTGTCTAACTAGTGGAGTACTAGCTATCTAGTAGGATTCTGACAGTAAATTCTTCTAAGAATACTTGTAGCTTCAACGCATGAAGCTTACTGCTATCAACTGACTAATATCGCCTACTCAAAGCAGACACTAGTACTAAATTTGGTTGCCTCATGTTAGCACAAGTTCACACATCATTCTAATGAAGGGCATGAAACCATTCATATAAATAAGTTCTCTCACTTACCAATGATAAATCCTAGGTTTGTCTTACAAACTGCAGTGATCAATTATATTACCCTAGTACCTCATCCACGAAAATGTACAACAGGTTGATGGAACACGGGTTGTTATCTCCCGAAAGAGCAAAGAAAGCATACG] [+] EMBL AK062521 [CTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTCGCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTGGCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGAGCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGGAATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGCCTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAAATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCAGATACCCTCCAGTGAGATGGCTGAATTCTGGTACGCACAAATTTTTACACCTTTTAGCGTAATATATAAATTTTCTTCTATCTCAACTGTTAGAAATACTCCTACCCCTATATGGAATATATATACAGTAGTAGTACATACTAGTGACATTCAGGTGTCTGTCTAACTAGTGGAGTACTAGCTATCTAGTAGGATTCTGACAGTAAATTCTTCTAAGAATACTTGTAGCTTCAACGCATGAAGCTTACTGCTATCAACTGACTAATATCGCCTACTCAAAGCAGACACTAGTACTAAATTTGGTTGCCTCATGTTAGCACAAGTTCACACATCATTCTAATGAAGGGCATGAAACCATTCATATAAATAAGTTCTCTCACTTACCAATGATAAATCCTAGGTTTGTCTTACAAACTGCAGTGATCAATTATATTACCCTAGTACCTCATCCACGAAAATGTACAACAGGTTGATGGAACACGGGTTGTTATCTCCCGAAAGAGCAAAGAAAGCATACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8457#0 AAAATAAAATCTTCCTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTC 60 consensus_8457#1 --------------CTTCTCGAAATCGCCGGCCGCACCGTCTCCTCTCTCCCCGGCCGTC 46 ********************************************** consensus_8457#0 GCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTG 120 consensus_8457#1 GCTGCGCCTCCTCTCTCGCTGGCGCGCCACGCCGCCCCAGCTCCGGTCGTCGTCCTCCTG 106 ************************************************************ consensus_8457#0 GCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGA 180 consensus_8457#1 GCCCCTCCGCGTCCGCGTCCCCAAGCGAGCGCTCGAGCTTTGCTTTCAAGCTCTCGCTGA 166 ************************************************************ consensus_8457#0 GCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGG 240 consensus_8457#1 GCTCCGGAGGGTAGAGATGTCGTCCTCCTCCGCCGCCGCCTTAGCCAGAGGCAAATCCGG 226 ************************************************************ consensus_8457#0 AATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGC 300 consensus_8457#1 AATCTCTGCCGCTAAATTCGAAGCGTCTAAGGGATTGGGCGCCAAGCCGAAGCGATCCGC 286 ************************************************************ consensus_8457#0 CTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAA 360 consensus_8457#1 CTCCGCCACCGGCAGCAGAGGGAAGACCGAGAAGAAGGTCTACTCGCTGCCAGGCCAGAA 346 ************************************************************ consensus_8457#0 ATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCA 420 consensus_8457#1 ATTCGACCCCCCTGAGGAGAGAGAGCCTCTCAGGATATTCTACGAGTCCTTATCCAAGCA 406 ************************************************************ consensus_8457#0 GATACCCTCCAGTGAGATGGCTGAATTCTGGTTGATGGAACACGGGTTGTTATCTCCCGA 480 consensus_8457#1 GATACCCTCCAGTGAGATGGCTGAATTCTGGT-----ACGCACAAATTTTTACACCTTTT 461 ******************************** *** ** *** * consensus_8457#0 AAGAGCAAAGAAAGCATACGAAAAAAAGCAAAAGCGGCAACAGCAAATACGATCAGGAAC 540 consensus_8457#1 A------------GCGTAATATATAAATTTTCTTCTATCTCA------ACTGTTAGAAAT 503 * ** ** * * *** * ** ** * ** ** consensus_8457#0 ACCAATTAAACCCAGCGTAAAGAAAGACAAACCGGAA-AGTTCAAAAAAACCAAGCTCAT 599 consensus_8457#1 ACTCCT--ACCCCTATATGGA-ATATATATACAGTAGTAGTACATACTAGTGACATTCAG 560 ** * * *** * * * * * * ** * * *** ** * * * *** consensus_8457#0 ATAATAGTTCAGATTCAAAGGCAAAAAAAAGAGTCGATTACAGCGATGACGATGACGATT 659 consensus_8457#1 GTGTCTGTCTAACT---AGTGGAGTACTAGCTATCTAGTAGGATTCTGACAGTAA--ATT 615 * ** * * * * * * * ** * ** **** * * *** consensus_8457#0 TCATTGTAAAACTGAAGAGATCCAGGGGATGATAGTATTCAGATACCAGCATATTCCTAT 719 consensus_8457#1 CTTCTAAGAATACTTGTAGCTTCAACGCATGA-AGCTTACTGCTATCAACTGACTAATAT 674 * ** ** * ** * **** ** * * * ** ** * * * *** consensus_8457#0 AGCACCAAGGCTAATAAACAGGTGCTGCTCTGAGGTTTCCATGGCA-ATGGTAACAACCA 778 consensus_8457#1 CGCCT----ACTCA-AAGCAGACACTAGTACTAAATTTGGTTGCCTCATGTTAGCA--CA 727 ** ** * ** *** ** * * *** ** * *** ** ** ** consensus_8457#0 AATGGGTTCATGATGATTCTGGTGGA----ACAACATTTCTGTTTATTGTCAATATTGGA 834 consensus_8457#1 AGTTCACACATCATTCTAATGAAGGGCATGAAACCATTCATATAAATAAGTTCTCTCACT 787 * * *** ** * ** ** * * **** * * ** * * consensus_8457#0 GTAGAAAGAAAAATGG-AGATCCTTTACAATGATAAAATAAAGTCATATTGGCAGCATTG 893 consensus_8457#1 TACCAATGATAAATCCTAGGTTTGTCTTACAAACTGCAGTGATCAATTATATTACCCTAG 847 ** ** **** ** * * * * * * ** * * * * * consensus_8457#0 TGTCTTATGTAAAGACAGGCACTTTGTGGAGCTAAAGATAAATAGGTTTCCCTTTGCTTT 953 consensus_8457#1 TACCTCATCCACGAAAATGTACAACA---GGTTGATGGAACACGGGTTGTTATCTCC--C 902 * ** ** * * * * ** * * * * * * **** * * * consensus_8457#0 GCTGGTGTCGTTGTATTTTGCGATTTGTACCTGCACGGTACCGTACCTTACCTTTGGTAG 1013 consensus_8457#1 GAAAGAGCAAAGAAAGCATACG-------------------------------------- 924 * * * * * ** consensus_8457#0 ATAAGATTTGGTTTGTTGCATTGCTGTTAAAAAAAAAAAAAAAAAAAA 1061 consensus_8457#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||