These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2202 fasta sequence [GTCCACTCCAGTGATCCGCGCTCGCTTGGAAATCCGAGCCGCGGCCTCAGATCCAATTTTCCGAGTCAAAATTCTGGGAGGAATCCATCCAATCCGCGGAGGAAGCTTCCACCGCGCAGATCCCCAAACCCCGGCCCATCCCCGTCCTCCAATCCACATCGATCCCCTGCAGATTCGAGGCGGAAATGGGGGAGGGGATCAACGGCGACGCCGGCGACCTCGCGGCGGCGCCGTACGACCAGTGGCTCCCATTCAGCCCCGCCGGGGGATCCCCGCGCCCATCCGCGCGTTACAAGCATGCTGCGGAAGTGGTTCGTGAAAAACTCTATGTGGTTGGTGGGAGTCGTAATGGCCGCTATCTATCAGATATCCAGGTCTTTGATTTTAGGACACTCAAGTGGTCAGCATTAAGTGCTGCTAGAGATTCAAGTCAGTTGAATATCGAAAATAATACCACAGACCCTTCATTCCCTGCACTAGCAGGCCACAGTCTGGTCAACTGGAAAAAATATATTGTGGTTGTAGCTGGGAACACCAGAACATCAACATCAAACAAGGTTTCAGTTTGGCTTATTAATGTGGAAACAAATAGCTGGTCTTCTGTTGATACATATGGAAAAGTTCCAATATCTCGTGGTGGTCAATCTGTATCCCTGGTTGGTTCTCGACTGATAATGTTTGGTGGAGAGGATAACAAGAGGCGACTTCTGAACGACCTTCATATACTTGACCTGGAGACAATGATGTGGGAAGAAGTTAAAACAGGGAAAGGTGGTCCAGCTCCTAGGTATGATCATTCAGCTGCTGTTTATGCTGATCAGTATCTTTTGATCTTTGGCGGTTCCTCTCACTCTACATGCTAGTGATATCTACCTTCTTGACTTGCAAACTATGGAGTGGTCTCAACCTGACACTCAAGGCGCGCACATAAATCCTAGGAGTGGTCATGCTGGTACCATGATTGATGAAAATTGGTACATAGTTGGTGGCGGAGATAACGCAAGTGGTTCTACTGATACAATTATGATGAATGCTTCCAAGTTCGTTTGGTCTGTAGTCACCAGTGTGCCAGCCCGAGATCCGCTTGCTTGTGAGGGTCTCACTCTTTGCTCAACCACAGTTGATGGCGAAAAGTTTCTGGTTGCCTTTGGTGGTTACAATGGACAATACAATAATGAGATATTTGTTATGAAACTTAAGCCAAGGAATTTAGTGCAACCTCGTCTGCTCCAATCACCAGCTGCTGCCGCCGCAGCTGCTTCTGTGACAGCTGCCTATGCTGTAATAACTGATGAGAAAACCAGAGACATTGTTGCAACGGATGATTTAGATGTGAAGAGAGTTCAGCCTTCAGGTTCTTCCAAACAAATTACTACTGAACTTGATGCACTTAATGGAGAGAAAGGCAAGCTAGAGTCCAGACTGGCAGAAGTTCGTGATGAAAACTCAAAACTAAAGGATAGACTAGATATGGTAAAGTTATCGCATGGTGAATTGACAAAGGAGCTTAAATCAGTTCAACATCAGTTAGCAGCAGAGGGTTCTAGGTGCCAGAAACTGGAGTCCCAAATTGCTGCTGCTCATAAAAGACTGGAATCTACTGATTCTTTGGAGAATGAACTAGAAGTGTTGCGGCAACAAATATCTCAGGTGGAGCAAACCATGACAACTGCTCAAAGACAGAAATCTGGGGGTGTTTGGAAGTGGGTGGCAGGAAGTGCAGAGATCTCTGATGATGAATAGTCCACCAACACCAAGACAAGCAGCTACCAAGCAGAGAGACGCATGCAGAGCTGCTACAGTTTTGAGATAATTTCTGGGTGCTCCCTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCCAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATTTGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTTTTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATACATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAATTTGGTTCAGTTGTCACTATATGCATGTCTCAATTCTGTGTGAAAAAAAAAAAGA] [+] EMBL AK068072 [GTCCACTCCAGTGATCCGCGCTCGCTTGGAAATCCGAGCCGCGGCCTCAGATCCAATTTTCCGAGTCAAAATTCTGGGAGGAATCCATCCAATCCGCGGAGGAAGCTTCCACCGCGCAGATCCCCAAACCCCGGCCCATCCCCGTCCTCCAATCCACATCGATCCCCTGCAGATTCGAGGCGGAAATGGGGGAGGGGATCAACGGCGACGCCGGCGACCTCGCGGCGGCGCCGTACGACCAGTGGCTCCCATTCAGCCCCGCCGGGGGATCCCCGCGCCCATCCGCGCGTTACAAGCATGCTGCGGAAGTGGTTCGTGAAAAACTCTATGTGGTTGGTGGGAGTCGTAATGGCCGCTATCTATCAGATATCCAGGTCTTTGATTTTAGGACACTCAAGTGGTCAGCATTAAGTGCTGCTAGAGATTCAAGTCAGTTGAATATCGAAAATAATACCACAGACCCTTCATTCCCTGCACTAGCAGGCCACAGTCTGGTCAACTGGAAAAAATATATTGTGGTTGTAGCTGGGAACACCAGAACATCAACATCAAACAAGGTTTCAGTTTGGCTTATTAATGTGGAAACAAATAGCTGGTCTTCTGTTGATACATATGGAAAAGTTCCAATATCTCGTGGTGGTCAATCTGTATCCCTGGTTGGTTCTCGACTGATAATGTTTGGTGGAGAGGATAACAAGAGGCGACTTCTGAACGACCTTCATATACTTGACCTGGAGACAATGATGTGGGAAGAAGTTAAAACAGGGAAAGGTGGTCCAGCTCCTAGGTATGATCATTCAGCTGCTGTTTATGCTGATCAGTATCTTTTGATCTTTGGCGGTTCCTCTCACTCTACATGCTAGTGATATCTACCTTCTTGACTTGCAAACTATGGAGTGGTCTCAACCTGACACTCAAGGCGCGCACATAAATCCTAGGAGTGGTCATGCTGGTACCATGATTGATGAAAATTGGTACATAGTTGGTGGCGGAGATAACGCAAGTGGTTCTACTGATACAATTATGATGAATGCTTCCAAGTTCGTTTGGTCTGTAGTCACCAGTGTGCCAGCCCGAGATCCGCTTGCTTGTGAGGGTCTCACTCTTTGCTCAACCACAGTTGATGGCGAAAAGTTTCTGGTTGCCTTTGGTGGTTACAATGGACAATACAATAATGAGATATTTGTTATGAAACTTAAGCCAAGGAATTTAGTGCAACCTCGTCTGCTCCAATCACCAGCTGCTGCCGCCGCAGCTGCTTCTGTGACAGCTGCCTATGCTGTAATAACTGATGAGAAAACCAGAGACATTGTTGCAACGGATGATTTAGATGTGAAGAGAGTTCAGCCTTCAGGTTCTTCCAAACAAATTACTACTGAACTTGATGCACTTAATGGAGAGAAAGGCAAGCTAGAGTCCAGACTGGCAGAAGTTCGTGATGAAAACTCAAAACTAAAGGATAGACTAGATATGGTAAAGTTATTGCATGGTGAATTGACAAAGGAGCTTAAATCAGTTCAACATCAGTTAGCAGCAGAGGGTTCTAGGTGCCAGAAACTGGAGTCCCAAATTGCTGCTGCTCATAAAAGACTGGAATCTACTGATTCTTTGGAGAATGAACTAGAAGTGTTGCGGCAACAAATATCTCAGGTGGAGCAAACCATGACAACTGCTCAAAGACAGAAATCTGGGGGTGTTTGGAAGTGGGTGGCAGGAAGTGCAGAGATCTCTGATGATGAATAGTCCACCAACACCAAGACAAGCAGCTACCAAGCAGAGAGACGCATGCAGAGCTGCTACAGTTTTGAGATAATTTCTGGGTGCTCCCTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCCAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATTTGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTTTTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATACATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAATTTGGTTC ] [+] EMBL CB633569 [ AATTTTCCGAGTCAAAATTCTGGGAGGAATCCATCCAATCCGCGGAGGAAGCTTCCACCGCGCAGATCCCCAAACCCCGGCCCATCCCCGTCCTCCAATCCACATCGATCCCCTGCAGATTCGAGGCGGAAATGGGGGAGGGGATCAACGGCGACGCCGGCGACCTCGCGGCGGCGCCGTACGACCAGTGGCTCCCATTCAGCCCCGCCGGGGGATCCCCGCGCCCATCCGCGCGTTACAAGCATGCTGCGGAAGTGGTTCGTGAAAAACTCTATGTGGTTGGTGGGAGTCGTAATGGCCGCTATCTATCAGATATCCAGGTCTTTGATTTTAGGACACTCAAGTGGTCAGCATTAAGTGCTGCTAGAGATTCAAGTCAGTTGAATATCGAAAATAATACCACAGACCCTTCATTCCCTGCACTAGCAGGCCACAGTCTGGTCAACTGGAAAAATTATATTGTGGTTGTAGCTGGGAACACCAGAACATCAACATCAAACAAGGTTTCAGTTTGGCTTATTAATGTGGAAACAAATAGCTGGTCTTCTGTTGATACATATGGAAAAGTTCCAATATCTCGTGGTGGTCAATCTGTATCCCTGGTTGGTTCTCGACTGATAATGTTTGGTGGAGAGGATAACAAGAGGCGACTTCTGAACGACCTTCATATACTTGACCTGGAGACAATGATGTGGGAAGAAGTTAAAACAGGGAAAGGTGGTCCAGCTCCTAGGTATGATCATTCAGCTGCTGTTTATGCTGATCAGTATCTTTTGATCTTTGGCGGTTCCTCTCA ] [-] EMBL CB638133 [ CACTTAATGGAGAGAAAGGCAAGTTAGAGTCCAGACTGGCAGAAGTTCGTGATGAAAACTCAACACTAAAGGATAGACTAGATATGGTAAAGTTATCGCATGGTGAATTGACAAAGGAGCTTAAATCAGTTCGACATCAGTTAGCAGCAGAGGGTTCTAGGTGCCAGAAACTGGAGTCCCAAATTGCTGTTGTTCATAAAAGAGTGGAATCAATTGATTCTTTGGAGAATGAACTAGAAGTGTTGCGGCAACAAATATCTCAGGTGGAGCAAACCATGACAACTGCTCAAAGACAGAAATCTGGGGGTGTTTGGAAGTGGGTGGCAGGAAGTGCAGAGATCTCTGATGATGAATAGTCCACCAACACCAAGACAAGCAGCTACCAAGCAGAGAGACGCATGCAGAGCTGCTACAGTTTTGAGATAATTTCTGGGTGCTCCCTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCCAAGACAGTCTTCTGAATCTTTTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATACACCGAATCATTTGTATCACATTCTAGAAATAATTAAATAGTTATTA ] [-] EMBL CB633570 [ AAGGCAAGCTAGAGTCCAGACTGGCAGAAGTTCGTGATGAAAACTCAAAACTAAAGGATAGACTAGATATGGTAAAGTTATCGCATGGTGAATTGACAAAGGAGCTTAAATCAGTTCAACATCAGTTAGCAGCAGAGGGTTCTAGGTGCCAGAAACTGGAGTCCCAAATTGCTGCTGCTCATAAAAGACTGGAATCTACTGATTCTTTGGAGAATGAACTAGAAGTGTTGCGGCAACAAATATCTCTGGTGGAGCAAACCATGACAACTGCTCAAAGACAGAAATCTGGGGGTGTTTGGAAGTGGGTGGCAGGAAGTGCAGAGATCTCTGATGATGAATAGTCCACCAACACCAAGACAAGCAGCTACCAAGCAGAGAGACGCATGCAGAGCTGCTACAGTTTTGAGATAATTTCTGGGTGCTCCCTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCCAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATTTGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTTTTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATACATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAATTTGGTTCAGTTGTCACTATATGCATGTCTCAATTCTGTGTGAAAAAAAAAAAGA] consensusID : consensus_8462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [CTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCTAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATTTGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTTTTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATACATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAAAAAAAAAAAAAAAA] [-] EMBL CA761257 [CTCAAGATCTTGTTCGCGGTTGATTTTGAGATAATATCTCCTAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATTTGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTTTTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATACATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8462#0 GTCCACTCCAGTGATCCGCGCTCGCTTGGAAATCCGAGCCGCGGCCTCAGATCCAATTTT 60 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CCGAGTCAAAATTCTGGGAGGAATCCATCCAATCCGCGGAGGAAGCTTCCACCGCGCAGA 120 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 TCCCCAAACCCCGGCCCATCCCCGTCCTCCAATCCACATCGATCCCCTGCAGATTCGAGG 180 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CGGAAATGGGGGAGGGGATCAACGGCGACGCCGGCGACCTCGCGGCGGCGCCGTACGACC 240 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 AGTGGCTCCCATTCAGCCCCGCCGGGGGATCCCCGCGCCCATCCGCGCGTTACAAGCATG 300 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CTGCGGAAGTGGTTCGTGAAAAACTCTATGTGGTTGGTGGGAGTCGTAATGGCCGCTATC 360 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 TATCAGATATCCAGGTCTTTGATTTTAGGACACTCAAGTGGTCAGCATTAAGTGCTGCTA 420 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 GAGATTCAAGTCAGTTGAATATCGAAAATAATACCACAGACCCTTCATTCCCTGCACTAG 480 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CAGGCCACAGTCTGGTCAACTGGAAAAAATATATTGTGGTTGTAGCTGGGAACACCAGAA 540 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CATCAACATCAAACAAGGTTTCAGTTTGGCTTATTAATGTGGAAACAAATAGCTGGTCTT 600 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CTGTTGATACATATGGAAAAGTTCCAATATCTCGTGGTGGTCAATCTGTATCCCTGGTTG 660 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 GTTCTCGACTGATAATGTTTGGTGGAGAGGATAACAAGAGGCGACTTCTGAACGACCTTC 720 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 ATATACTTGACCTGGAGACAATGATGTGGGAAGAAGTTAAAACAGGGAAAGGTGGTCCAG 780 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CTCCTAGGTATGATCATTCAGCTGCTGTTTATGCTGATCAGTATCTTTTGATCTTTGGCG 840 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 GTTCCTCTCACTCTACATGCTAGTGATATCTACCTTCTTGACTTGCAAACTATGGAGTGG 900 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 TCTCAACCTGACACTCAAGGCGCGCACATAAATCCTAGGAGTGGTCATGCTGGTACCATG 960 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 ATTGATGAAAATTGGTACATAGTTGGTGGCGGAGATAACGCAAGTGGTTCTACTGATACA 1020 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 ATTATGATGAATGCTTCCAAGTTCGTTTGGTCTGTAGTCACCAGTGTGCCAGCCCGAGAT 1080 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CCGCTTGCTTGTGAGGGTCTCACTCTTTGCTCAACCACAGTTGATGGCGAAAAGTTTCTG 1140 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 GTTGCCTTTGGTGGTTACAATGGACAATACAATAATGAGATATTTGTTATGAAACTTAAG 1200 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CCAAGGAATTTAGTGCAACCTCGTCTGCTCCAATCACCAGCTGCTGCCGCCGCAGCTGCT 1260 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 TCTGTGACAGCTGCCTATGCTGTAATAACTGATGAGAAAACCAGAGACATTGTTGCAACG 1320 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 GATGATTTAGATGTGAAGAGAGTTCAGCCTTCAGGTTCTTCCAAACAAATTACTACTGAA 1380 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CTTGATGCACTTAATGGAGAGAAAGGCAAGCTAGAGTCCAGACTGGCAGAAGTTCGTGAT 1440 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 GAAAACTCAAAACTAAAGGATAGACTAGATATGGTAAAGTTATCGCATGGTGAATTGACA 1500 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 AAGGAGCTTAAATCAGTTCAACATCAGTTAGCAGCAGAGGGTTCTAGGTGCCAGAAACTG 1560 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 GAGTCCCAAATTGCTGCTGCTCATAAAAGACTGGAATCTACTGATTCTTTGGAGAATGAA 1620 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CTAGAAGTGTTGCGGCAACAAATATCTCAGGTGGAGCAAACCATGACAACTGCTCAAAGA 1680 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 CAGAAATCTGGGGGTGTTTGGAAGTGGGTGGCAGGAAGTGCAGAGATCTCTGATGATGAA 1740 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 TAGTCCACCAACACCAAGACAAGCAGCTACCAAGCAGAGAGACGCATGCAGAGCTGCTAC 1800 consensus_8462#1 ------------------------------------------------------------ consensus_8462#0 AGTTTTGAGATAATTTCTGGGTGCTCCCTCAAGATCTTGTTCGCGGTTGATTTTGAGATA 1860 consensus_8462#1 ---------------------------CTCAAGATCTTGTTCGCGGTTGATTTTGAGATA 33 ********************************* consensus_8462#0 ATATCTCCCAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCC 1920 consensus_8462#1 ATATCTCCTAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCC 93 ******** *************************************************** consensus_8462#0 ATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATT 1980 consensus_8462#1 ATAGGCAAGTTAGACATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATT 153 ************************************************************ consensus_8462#0 TGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTT 2040 consensus_8462#1 TGTATCACATTCTAGAAATAATTGATTAGTTATTAATTTTGTGTTCGTCATGGCATACTT 213 ************************************************************ consensus_8462#0 TTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATA 2100 consensus_8462#1 TTCTGTAGTCGGTGTTACAGAAGTAGAAAGTGTTCATTGGTTTCGGCGAGGGGATGAATA 273 ************************************************************ consensus_8462#0 CATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAATTTGGTTCAGTTG 2160 consensus_8462#1 CATTGTTTATATACCTCAAACTTGCAAATATACTATTCAGATATAAAAAAAAAAAAAAAA 333 *********************************************** * consensus_8462#0 TCACTATATGCATGTCTCAATTCTGTGTGAAAAAAAAAAAGA 2202 consensus_8462#1 A----------------------------------------- 334 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||