cluster # 8468

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Oryza sativa
cluster # 8468 cluster # 8468 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8468#0 length = 597 sequences # 4

consensus_8468#1 length = 216 sequences # 1

consensusID : consensus_8468#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 597
fasta sequence

                              [GCCCAGCCATCGCCGCCGCCGCCGCGCTCCCCGCCACAGACATGGCTGCTGCTATCAACAGCGAGGCGTCCATGAGCTCGAGGCCCAAGCTCGCGTGCCTCTGCTCGCCGACCAACCACCCGGGCTCCTTCCGCTGCATCCGCCACCGCCCGATCCCACGCGCCC-GCCACCTCTCCTCTTCTTCTTCCCC-GCCACCACCGCCGCCGTCGTCGTCGCCGTCGTCAGGCGGCGTCGCGTCGGCCGGCGCCAGGGCGAAGGGGGGGCGGTC-GGTCCGCGCGCACCTGCTTCGGATGATCAGCTGCAGCAACGGCGGCCGCCGCCGCCGCCGCGGCGACTTCCAGCCTCGCCC-TTCCAGGCTTCGCCAGTGCGCCTCCTGACGATCACCGACGACCTCTTCGGATCGAGTGATAGTACGCCACTATTTCGCGCGTACGCATCGAGTGACACTAGAGCTAGGGTAATCAGAATCAGAATCATCCAGGGCTTGGCTAGGAAGCCATGTGTGATGTGCTCTTTGCTTTTCTACTACTCTACTAGTATCTGTACTCCTTTGTGTGTTTTTTTCCTCAGAGGAATGAATGGATCAGTTCAATTAAA]

[+] EMBL AK063712             [GCCCAGCCATCGCCGCCGCCGCCGCGCTCCCCGCCACAGACATGGCTGCTGCTATCAACAGCGAGGCGTCCATGAGCTCGAGGCCCAAGCTCGCGTGCCTCTGCTCGCCGACCAACCACCCGGGCTCCTTCCGCTGCATCCGCCACCGCCCGATCCCACGCGCCC GCCACCTCTCCTCTTCTTCTTCCCC GCCACCACCGCCGCCGTCGTCGTCGCCGTCGTCAGGCGGCGTCGCGTCGGCCGGCGCCAGGGCGAAGGGGGGGCGGTC GGTCCGCGCGCACCTGCTTCGGATGATCAGCTGCAGCAACGGCGGCCGCCGCCGCCGCCGCGGCGACTTCCAGCCTCGCCC TTCCAGGCTTCGCCAGTGCGCCTCCTGACGATCACCGACGACCTCTTCGGATCGAGTGATAGTACGCCACTATTTCGCGCGTACGCATCGAGTGACACTAGAGCTAGGGTAATCAGAATCAGAATCATCCAGGGCTTGGCTAGGAAGCCATGTGTGATGTACTCTTTGCTTTTCTACTACTCTACTAGTATCTGTACTCCTTTGTGTGTTTTTTTCCTCAGAGGAATGAATGGATCAGTTC       ]
[+] EMBL BI796015             [                CGCC CCGCGCTCCCCGCCACAGACATGGCTGCTGCTATCAACAGCGAGGCGTCCATGAGCTCGAGGCCCAAGCTCGCGTGCCTCTGCTCGCCGACCAACCACCCGGGCTCCTTCCGCTGCATCCGCCACCGCCCGATCCCCCGCGCCCAGCCACCTCTCCTCTTCTTCTTCCCCAGCCACCACCGCCGCCGTCGTCGTCGCCGTCGTCAGGCGGCGTCGCGTCGGCCGGCGCCAGGGCGAAGGGGGGGCGGTCAGGTCCGCGCGCACCTGCTTCGGATGATCAGCTG                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB684170             [                                                                                                                                                                      GCCACCTCTCCTCTTCTTCTTCCCC GCCACCACCGCCGCCGTCGTCGTCGCCGTCGTCAGGCGGCGTCGCGTCGGCCGGCGCCAGGGCGAAGGGGGGGCGGTC GGTCCGCGCGCACCTGCTTCGGATGATCAGCTGCAGCAACGGCGGCCGCCGCCGCCGCCGCGGCGACTTCCAGCCTCGCCC TTCCAGGCTTCGCCAGTGCGCCTCCTGACGATCACCGACGACCTCTTCGGATCGAGTGATAGTACGCCACTATTTCGCGCGTACGCATCGAGTGACACTAGAGCTAGGGTAATCAGAATCAGAATCATCCAGGGCTTGGCTAGGAAGCCATGTGTGATGTGCTCTTTGCTTTTCTACTACTCTACTAGTATCTGTACTCCTTTGTGTGTTTTTTTCCTCAGAGGAATGAATGGATCAGTTC       ]
[-] EMBL AU069804             [                                                                                                                                                                                                                                                                                                                                   CGCCGCCGCGGNGACTTCCAGCCTCGCCCTTTCCAG  TTCGCCAGTGCGCCTCCTNACGATCACCGACGACCTCTTCGGATCGAGTGATAGTACGCCACTATTTCGCGCGTACGCATCGAGTGACACTAGAGCTAGGGTAATTAGAATTAGAATCATCCAGGGCTTGGCTAGGAAGCCATGTGTGATGTGCTCTTTGCTTTTCTACTACTCTACTAGTATCTGTACTCCTTTGTGTGTTTTTTTCCTCAGAGGAATGAATGGATCAGTTCAATTAAA]




>consensus_8468#0
GCCCAGCCATCGCCGCCGCCGCCGCGCTCCCCGCCACAGACATGGCTGCTGCTATCAACA
GCGAGGCGTCCATGAGCTCGAGGCCCAAGCTCGCGTGCCTCTGCTCGCCGACCAACCACC
CGGGCTCCTTCCGCTGCATCCGCCACCGCCCGATCCCACGCGCCCGCCACCTCTCCTCTT
CTTCTTCCCCGCCACCACCGCCGCCGTCGTCGTCGCCGTCGTCAGGCGGCGTCGCGTCGG
CCGGCGCCAGGGCGAAGGGGGGGCGGTCGGTCCGCGCGCACCTGCTTCGGATGATCAGCT
GCAGCAACGGCGGCCGCCGCCGCCGCCGCGGCGACTTCCAGCCTCGCCCTTCCAGGCTTC
GCCAGTGCGCCTCCTGACGATCACCGACGACCTCTTCGGATCGAGTGATAGTACGCCACT
ATTTCGCGCGTACGCATCGAGTGACACTAGAGCTAGGGTAATCAGAATCAGAATCATCCA
GGGCTTGGCTAGGAAGCCATGTGTGATGTGCTCTTTGCTTTTCTACTACTCTACTAGTAT
CTGTACTCCTTTGTGTGTTTTTTTCCTCAGAGGAATGAATGGATCAGTTCAATTAAA

consensusID : consensus_8468#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence

                              [AGCCTCGCCCTGTCCGTGGCCAGTGCGCCTCCTGACGATCACCCGACGACCTCTTCGGATACGAGTGATAGTATGCCACTATTCTGCGCCGTACGCACTCGAGTGACACTCAGAGCTAGGGTAATGAGAATNAGNNNCATCTCAGGTCTTGGCTAGGAAGCCTATGTGTGATGTGCTCTTTGCTTTTCTACCTACTTCTAGCTAGTAGCTGTCGAA]

[-] EMBL OS38100              [AGCCTCGCCCTGTCCGTGGCCAGTGCGCCTCCTGACGATCACCCGACGACCTCTTCGGATACGAGTGATAGTATGCCACTATTCTGCGCCGTACGCACTCGAGTGACACTCAGAGCTAGGGTAATGAGAATNAGNNNCATCTCAGGTCTTGGCTAGGAAGCCTATGTGTGATGTGCTCTTTGCTTTTCTACCTACTTCTAGCTAGTAGCTGTCGAA]




>consensus_8468#1
AGCCTCGCCCTGTCCGTGGCCAGTGCGCCTCCTGACGATCACCCGACGACCTCTTCGGAT
ACGAGTGATAGTATGCCACTATTCTGCGCCGTACGCACTCGAGTGACACTCAGAGCTAGG
GTAATGAGAATNAGNNNCATCTCAGGTCTTGGCTAGGAAGCCTATGTGTGATGTGCTCTT
TGCTTTTCTACCTACTTCTAGCTAGTAGCTGTCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8468#0      GCCCAGCCATCGCCGCCGCCGCCGCGCTCCCCGCCACAGACATGGCTGCTGCTATCAACA 60
consensus_8468#1      ------------------------------------------------------------
                                                                                  

consensus_8468#0      GCGAGGCGTCCATGAGCTCGAGGCCCAAGCTCGCGTGCCTCTGCTCGCCGACCAACCACC 120
consensus_8468#1      ------------------------------------------------------------
                                                                                  

consensus_8468#0      CGGGCTCCTTCCGCTGCATCCGCCACCGCCCGATCCCACGCGCCCGCCACCTCTCCTCTT 180
consensus_8468#1      ------------------------------------------------------------
                                                                                  

consensus_8468#0      CTTCTTCCCCGCCACCACCGCCGCCGTCGTCGTCGCCGTCGTCAGGCGGCGTCGCGTCGG 240
consensus_8468#1      ------------------------------------------------------------
                                                                                  

consensus_8468#0      CCGGCGCCAGGGCGAAGGGGGGGCGGTCGGTCCGCGCGCACCTGCTTCGGATGATCAGCT 300
consensus_8468#1      ------------------------------------------------------------
                                                                                  

consensus_8468#0      GCAGCAACGGCGGCCGCCGCCGCCGCCGCGGCGACTTCCAGCCTCGCCCTTCCAGGCTTC 360
consensus_8468#1      ---------------------------------------AGCCTCGCCCTGTC---CGTG 18
                                                             ***********  *   * * 

consensus_8468#0      GCCAGTGCGCCTCCTGACGATCACC-GACGACCTCTTCGGAT-CGAGTGATAGTACGCCA 418
consensus_8468#1      GCCAGTGCGCCTCCTGACGATCACCCGACGACCTCTTCGGATACGAGTGATAGTATGCCA 78
                      ************************* **************** ************ ****

consensus_8468#0      CTATTTCGCGC-GTACGCA-TCGAGTGACACT-AGAGCTAGGGTAATCAGAATCAGAATC 475
consensus_8468#1      CTATTCTGCGCCGTACGCACTCGAGTGACACTCAGAGCTAGGGTAATGAGAATNAGNNNC 138
                      *****  **** ******* ************ ************** ***** **   *

consensus_8468#0      ATC-CAGGGCTTGGCTAGGAAGCC-ATGTGTGATGTGCTCTTTGCTTTTCTAC-TACTCT 532
consensus_8468#1      ATCTCAGGTCTTGGCTAGGAAGCCTATGTGTGATGTGCTCTTTGCTTTTCTACCTACTTC 198
                      *** **** *************** **************************** ****  

consensus_8468#0      --ACTAGTATCTGTACTCCTTTGTGTGTTTTTTTCCTCAGAGGAATGAATGGATCAGTTC 590
consensus_8468#1      TAGCTAGTAGCTGTCGAA------------------------------------------ 216
                         ****** ****                                              

consensus_8468#0      AATTAAA 597
consensus_8468#1      -------