These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 597 fasta sequence [GCCCAGCCATCGCCGCCGCCGCCGCGCTCCCCGCCACAGACATGGCTGCTGCTATCAACAGCGAGGCGTCCATGAGCTCGAGGCCCAAGCTCGCGTGCCTCTGCTCGCCGACCAACCACCCGGGCTCCTTCCGCTGCATCCGCCACCGCCCGATCCCACGCGCCC-GCCACCTCTCCTCTTCTTCTTCCCC-GCCACCACCGCCGCCGTCGTCGTCGCCGTCGTCAGGCGGCGTCGCGTCGGCCGGCGCCAGGGCGAAGGGGGGGCGGTC-GGTCCGCGCGCACCTGCTTCGGATGATCAGCTGCAGCAACGGCGGCCGCCGCCGCCGCCGCGGCGACTTCCAGCCTCGCCC-TTCCAGGCTTCGCCAGTGCGCCTCCTGACGATCACCGACGACCTCTTCGGATCGAGTGATAGTACGCCACTATTTCGCGCGTACGCATCGAGTGACACTAGAGCTAGGGTAATCAGAATCAGAATCATCCAGGGCTTGGCTAGGAAGCCATGTGTGATGTGCTCTTTGCTTTTCTACTACTCTACTAGTATCTGTACTCCTTTGTGTGTTTTTTTCCTCAGAGGAATGAATGGATCAGTTCAATTAAA] [+] EMBL AK063712 [GCCCAGCCATCGCCGCCGCCGCCGCGCTCCCCGCCACAGACATGGCTGCTGCTATCAACAGCGAGGCGTCCATGAGCTCGAGGCCCAAGCTCGCGTGCCTCTGCTCGCCGACCAACCACCCGGGCTCCTTCCGCTGCATCCGCCACCGCCCGATCCCACGCGCCC GCCACCTCTCCTCTTCTTCTTCCCC GCCACCACCGCCGCCGTCGTCGTCGCCGTCGTCAGGCGGCGTCGCGTCGGCCGGCGCCAGGGCGAAGGGGGGGCGGTC GGTCCGCGCGCACCTGCTTCGGATGATCAGCTGCAGCAACGGCGGCCGCCGCCGCCGCCGCGGCGACTTCCAGCCTCGCCC TTCCAGGCTTCGCCAGTGCGCCTCCTGACGATCACCGACGACCTCTTCGGATCGAGTGATAGTACGCCACTATTTCGCGCGTACGCATCGAGTGACACTAGAGCTAGGGTAATCAGAATCAGAATCATCCAGGGCTTGGCTAGGAAGCCATGTGTGATGTACTCTTTGCTTTTCTACTACTCTACTAGTATCTGTACTCCTTTGTGTGTTTTTTTCCTCAGAGGAATGAATGGATCAGTTC ] [+] EMBL BI796015 [ CGCC CCGCGCTCCCCGCCACAGACATGGCTGCTGCTATCAACAGCGAGGCGTCCATGAGCTCGAGGCCCAAGCTCGCGTGCCTCTGCTCGCCGACCAACCACCCGGGCTCCTTCCGCTGCATCCGCCACCGCCCGATCCCCCGCGCCCAGCCACCTCTCCTCTTCTTCTTCCCCAGCCACCACCGCCGCCGTCGTCGTCGCCGTCGTCAGGCGGCGTCGCGTCGGCCGGCGCCAGGGCGAAGGGGGGGCGGTCAGGTCCGCGCGCACCTGCTTCGGATGATCAGCTG ] [+] EMBL CB684170 [ GCCACCTCTCCTCTTCTTCTTCCCC GCCACCACCGCCGCCGTCGTCGTCGCCGTCGTCAGGCGGCGTCGCGTCGGCCGGCGCCAGGGCGAAGGGGGGGCGGTC GGTCCGCGCGCACCTGCTTCGGATGATCAGCTGCAGCAACGGCGGCCGCCGCCGCCGCCGCGGCGACTTCCAGCCTCGCCC TTCCAGGCTTCGCCAGTGCGCCTCCTGACGATCACCGACGACCTCTTCGGATCGAGTGATAGTACGCCACTATTTCGCGCGTACGCATCGAGTGACACTAGAGCTAGGGTAATCAGAATCAGAATCATCCAGGGCTTGGCTAGGAAGCCATGTGTGATGTGCTCTTTGCTTTTCTACTACTCTACTAGTATCTGTACTCCTTTGTGTGTTTTTTTCCTCAGAGGAATGAATGGATCAGTTC ] [-] EMBL AU069804 [ CGCCGCCGCGGNGACTTCCAGCCTCGCCCTTTCCAG TTCGCCAGTGCGCCTCCTNACGATCACCGACGACCTCTTCGGATCGAGTGATAGTACGCCACTATTTCGCGCGTACGCATCGAGTGACACTAGAGCTAGGGTAATTAGAATTAGAATCATCCAGGGCTTGGCTAGGAAGCCATGTGTGATGTGCTCTTTGCTTTTCTACTACTCTACTAGTATCTGTACTCCTTTGTGTGTTTTTTTCCTCAGAGGAATGAATGGATCAGTTCAATTAAA] consensusID : consensus_8468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [AGCCTCGCCCTGTCCGTGGCCAGTGCGCCTCCTGACGATCACCCGACGACCTCTTCGGATACGAGTGATAGTATGCCACTATTCTGCGCCGTACGCACTCGAGTGACACTCAGAGCTAGGGTAATGAGAATNAGNNNCATCTCAGGTCTTGGCTAGGAAGCCTATGTGTGATGTGCTCTTTGCTTTTCTACCTACTTCTAGCTAGTAGCTGTCGAA] [-] EMBL OS38100 [AGCCTCGCCCTGTCCGTGGCCAGTGCGCCTCCTGACGATCACCCGACGACCTCTTCGGATACGAGTGATAGTATGCCACTATTCTGCGCCGTACGCACTCGAGTGACACTCAGAGCTAGGGTAATGAGAATNAGNNNCATCTCAGGTCTTGGCTAGGAAGCCTATGTGTGATGTGCTCTTTGCTTTTCTACCTACTTCTAGCTAGTAGCTGTCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8468#0 GCCCAGCCATCGCCGCCGCCGCCGCGCTCCCCGCCACAGACATGGCTGCTGCTATCAACA 60 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 GCGAGGCGTCCATGAGCTCGAGGCCCAAGCTCGCGTGCCTCTGCTCGCCGACCAACCACC 120 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 CGGGCTCCTTCCGCTGCATCCGCCACCGCCCGATCCCACGCGCCCGCCACCTCTCCTCTT 180 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 CTTCTTCCCCGCCACCACCGCCGCCGTCGTCGTCGCCGTCGTCAGGCGGCGTCGCGTCGG 240 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 CCGGCGCCAGGGCGAAGGGGGGGCGGTCGGTCCGCGCGCACCTGCTTCGGATGATCAGCT 300 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 GCAGCAACGGCGGCCGCCGCCGCCGCCGCGGCGACTTCCAGCCTCGCCCTTCCAGGCTTC 360 consensus_8468#1 ---------------------------------------AGCCTCGCCCTGTC---CGTG 18 *********** * * * consensus_8468#0 GCCAGTGCGCCTCCTGACGATCACC-GACGACCTCTTCGGAT-CGAGTGATAGTACGCCA 418 consensus_8468#1 GCCAGTGCGCCTCCTGACGATCACCCGACGACCTCTTCGGATACGAGTGATAGTATGCCA 78 ************************* **************** ************ **** consensus_8468#0 CTATTTCGCGC-GTACGCA-TCGAGTGACACT-AGAGCTAGGGTAATCAGAATCAGAATC 475 consensus_8468#1 CTATTCTGCGCCGTACGCACTCGAGTGACACTCAGAGCTAGGGTAATGAGAATNAGNNNC 138 ***** **** ******* ************ ************** ***** ** * consensus_8468#0 ATC-CAGGGCTTGGCTAGGAAGCC-ATGTGTGATGTGCTCTTTGCTTTTCTAC-TACTCT 532 consensus_8468#1 ATCTCAGGTCTTGGCTAGGAAGCCTATGTGTGATGTGCTCTTTGCTTTTCTACCTACTTC 198 *** **** *************** **************************** **** consensus_8468#0 --ACTAGTATCTGTACTCCTTTGTGTGTTTTTTTCCTCAGAGGAATGAATGGATCAGTTC 590 consensus_8468#1 TAGCTAGTAGCTGTCGAA------------------------------------------ 216 ****** **** consensus_8468#0 AATTAAA 597 consensus_8468#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||