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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8480 cluster # 8480       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8480#0 length = 715 sequences # 5  

consensusID : consensus_8480#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 715
fasta sequence
                              [TACAGGGTAATATTCTAAGATAAGAAGTCCTCATGTGACTCAATGTCACGTTACTGTACAAAACAGTACAAGTTTGTGTATATAACACAATGGAGCAGAGATGGGCGACGTGCAGGCTTTCATCTATCAAGATAAGCCCACTTCTCTACCCATGTAATCCTACAATGATCTCGTATCAAAATTACAGGGGGTGCACCTGTTCAACCATACATCAACCAAAACCAAGCACAGTGGGTGCTAACTCTAACAATGGCTCCAACGCACTTGGAGCAAACTTTCGAGCAAACAGGAAGCACATCGTAGAGTTCTGGCCGTTGTATAAACAAGTCCGGCCCTCTTGAACTCTTCTCAGGAATTCCTCTGTGATATCACCCCTTCCAAAGGTGGCTGGATGTGCACCTCCTCTTGACCAATCCACCCAAGTAATACTTCTATTTGCCAGGCTTTGTGGTGCTTCAATTGTAAGCATTGTAGGGAAATAGTGCTCATCAACATAACAATGAGGCCTGCAGAACTCCTTGAATTTTGGGTAATAGAGCGTGTCTCTCACAATTTCGATGGCAAGCTCCCTGTTTACTTCAAACCATTGCGAGCCTTTGCGCCATTGTGTGAGTTCAACCTCTGGGGTCATGTTCCAGTTGTACCTGCCCCGTCCATATGGTCCAGGATCATCGAACGCCATGACAAAGCTTTGGCTTGAATTCTGGAGGTATCG]

[-] EMBL AI978496             [TACAGGGTAATATTCTAAGATAAGAAGTCCTCATGTGACTCAATGTCACGTTACTGTACAAAACAGTACAAGTTTGTGTATATAACACAATGGAGCAGAGATGGGCGACGTGCAGGCTTTCATCTATCAAGATAAGCCCACTTCTCTACCCATGTAATCCTACAATGATCTCGTATCAAAATTACAGGGGGTGCACCTGTTCAACCATACATCAACCAAAACCAAGCACANNNGGTGCTAACTCTAACAATGGCTCCAACGCACTTGGAGCAAACTTTCGAGCAAACAGGAAGCACATCG                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF295194             [                 tttttAGAAGTCCTCATGTGATTTAATGTCACGTTACTGTACAAAACAGTACAAGTTTGTGTATATAACACAATGGAGCAGAGATGGGCGACGTGCAGGCTTTCATCTATCAAGATAAGCCCACTTCTCTACCCATGTAATCCTACAATGATCTTGTATCAAAATTACAGGGGGTGCACCTGTTCAACCATACATCAACCAAAACCAAGCACAGTGGGTGCTAACTCTAACAATGGCTCCAACGCACTTGGAGCAAACTTTCGAGCAAACAGGAAGCACATCGTAGAGTTCTGGCCGTTGTATAAACAAGTCCGGCCCTCTTGAACTCTTCTCAGGAATTCCTCTGTGATATCACCCCTTCCAAAGGTGGCTGGATGTGCACCTCCTCTTGACCAATCCACCCAAGTAATACTTCTATTTGCCAGGCTTTGTGGTGCTTCAATTGTAAGCATTGTAGGGAAATAGTGCTCATCAA                                                                                                                                                                                                                               ]
[+] EMBL CB674576             [                          GTCCTCATGTGACTCAATGCCTCGTTACTGTACAAAACAGTACAAGTTTGTGTATATAACACAATGGAGCAGAGATGGGCGACGTGCAGGCTTTCATCTATCAAGATAAGCCCACTTCTCTACCCATGTAATCCTACAATGATCTCGTATCAAAATTACAGGGGGTGCACCTGTTCAACCATACATCAACCAAAACCAAGCACAGTGGGTGCTAACTCTAACAATGGCTCCAACGCACTTGGAGCAAACTTTCGAGCAAACAGGAAGCACATCGTAGAGTTCTGGCCGTTGTATAAACAAGTCCGGCCCTCTTGAACTCTTCTCAGGAATTCCTCTGTGATATCACCCCTTCCAAAGGTGGCTGGATGTGCACCTCCTCTTGACCAATCCACCCAAGTAATACTTCTATTTGCCAGGCTTTGTGGTGCTTCAATTGTAAGCATTGTAGGGAAATAGTGCTCATCAACATAACAATGAGGCCTGCAGAACTCCTTGAATTTTGGGTAATAGAGCGTGTCTCTCACAATTTCGATGGCAAGCTCCCTGTTTACTTCAAACCATTGCGAGCCTTTGCGCCATTGTGTGAGTTCAACCTCTGGGGTCATGTTCCAGTTGTACCTGCCCCGTCCATATGGTCCAGGATCATCGAACGCCATGACAAAGCTTTGGCTTGAATTCTGGAGGTATCG]
[-] EMBL AU225306             [                                                                                                                                                                                              GTGCACCTGTTCAACCATACATCAACCAAAACCAAGCACAGTGGGTGCTAACTCTAACAATGGCTCCAACGCACTTGGAGCANACTTTCGAGCAAACAGGAAGCACATCGTAGAGTTCTGGCCGTTGTATAAACAAGTCCGGCCCTCTTGAACTCTTCTCAGGAATTCCTCTGTGATATCACCCCTTCCAAAGGTGGCTGGATGTGCACCTCCTCTTGACCAATCCACCCAAGTAATACTTCTATTTGCCAGGCTTTGTGGTGCTTCAATTGTAAGCATTGTAGGGAAATAGTGCTCATCAACATAACAATGAGGCCTGCAGAACTCCTTGAATTTTGGGTAATAGAGCGTGTCTCTCACAATTTCGATGGCAAGCTCCCTGTTTACTTCAAACCATTGCGAGCCTTTGCGCCATTGTGTGAGTTCAACCTCTGGGGTCATGTTCCAGTTGTACCTGCCCCGTCCATATGGTCCAGGATCATCGAACGCCATGAgcggc                          ]
[-] EMBL AI978495             [                                                                                                                                                                                                                       nnnnnnnCAAGCACAGTGGGTGCTAACTCTNNCANTGGCTCCAACGCACTTGGAGCAAACTTTCGAGCAAACAGGAAGCACATCGTAGAGTTCTNNNCGTTGTATAAACAAGTCCGGCNCTCTTGAACTCTTCTCAGGAATTCCTCTGTGATATCACCCCTTCCAAAGGTGGCTGGATGTGCACCTCCTCTTGACCAATCCACCCAAGTAATACTTCTATTTGCCAGGCTTTGTGGTGCTTCAATTGTAAGCATTGTAGGGAAATAGTGCTCATCAACATAACAATGAGGCCTGCAGAACTCCTTGAATTTTGGGTAATAGAGCGTGTCTCTCACAATTTCGATGGCAAGCTCCCTGTTTACTTCAAACCATTGCGAGCCTTTGCGCCATTGT                                                                                                           ]


>consensus_8480#0 TACAGGGTAATATTCTAAGATAAGAAGTCCTCATGTGACTCAATGTCACGTTACTGTACA AAACAGTACAAGTTTGTGTATATAACACAATGGAGCAGAGATGGGCGACGTGCAGGCTTT CATCTATCAAGATAAGCCCACTTCTCTACCCATGTAATCCTACAATGATCTCGTATCAAA ATTACAGGGGGTGCACCTGTTCAACCATACATCAACCAAAACCAAGCACAGTGGGTGCTA ACTCTAACAATGGCTCCAACGCACTTGGAGCAAACTTTCGAGCAAACAGGAAGCACATCG TAGAGTTCTGGCCGTTGTATAAACAAGTCCGGCCCTCTTGAACTCTTCTCAGGAATTCCT CTGTGATATCACCCCTTCCAAAGGTGGCTGGATGTGCACCTCCTCTTGACCAATCCACCC AAGTAATACTTCTATTTGCCAGGCTTTGTGGTGCTTCAATTGTAAGCATTGTAGGGAAAT AGTGCTCATCAACATAACAATGAGGCCTGCAGAACTCCTTGAATTTTGGGTAATAGAGCG TGTCTCTCACAATTTCGATGGCAAGCTCCCTGTTTACTTCAAACCATTGCGAGCCTTTGC GCCATTGTGTGAGTTCAACCTCTGGGGTCATGTTCCAGTTGTACCTGCCCCGTCCATATG GTCCAGGATCATCGAACGCCATGACAAAGCTTTGGCTTGAATTCTGGAGGTATCG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)