These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 906 fasta sequence [TCCTTCACCACCACCACCCACGAGTTCCACACGGAGGTCAGGAGGTGACTGATTCCTTGGCGGCTTCCTCCTCCCGCGAGCTGTGAAAATTTTGTAACTACTACGTACTGGTCGCTCGTCGGAGCAGTAGTGGTTGTGGTGGTAGCAGTGGCATGGCCTCCTCGCTGGCGTCCGCCTCGTGGGTGGTGCTGCCGCCGGTGCAGGCTCGGGTTGCTGCGGCGGTGGCGGTGGGGCCGACATGCCGCGTGCTGCTAGCCTACACGCCGCTGCTGTCCGGGTCGGCGCNGCGGCGGGTGGTGGGGCGGCCTCTCGCNCCGCCGCGGTGCTCGGCGCTCGANGATCCCGGCCCCAGCGACGGCGGGGAGGGGAACGGCAGGGTGGTGGAGGAGGGGGAGGAGGAGGTGGATGCCTCATTTTTAATATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGGGAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGGCTTCTTCAGATGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCTTCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTTCAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGCTGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGCAGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTCAAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGCCCACAT] [+] EMBL AU056664 [TCCTTCACCACCACCACCCACGAGTTCCACACGGAGGTCAGGAGGTGACTGATTCCTTGGCGGCTTCCTCCTCCCGCGAGCTGTGAAAATTTTGTAACTACTACGTACTGGTCGCTCGTCGGAGCAGTAGTGGTTGTGGTGGTAGCAGTGGCATGGCCTCCTCGCTGGCGTCCGCCTCGTGGGTGGTGCTGCCGCCGGTGCAGGCTCGGGTTGCTGCGGCGGTGGCGGTGGGGCCGACATGCCGCGTGCTGCTAGCCTACACGCCGCTGCTGTCCGGGTCGGCGCNGCGGCGGGTGGTGGGGCGGCCTCTCGCNCCGCCGCGGTGCTCGGCGCTCGANGATCCCGGC ] [+] EMBL CB624421 [ GCTCGGTTTGCTGCGGCGGTGGCGGTGGGGCCGACATGCCGCGTGCTGCTAGCCTACACGCCGCTGCTGTCCGGGTCGGCGCGGCGGCGGGTGGTGGGGCGGCCTCTCGCGCCGCCGCGGTGCTCGGCGCTCGAGGATCCCGGCCCCAGCGACGGCGGGGAGGGGAACGGCAGGGTGGTGGAGGAGGGGGAGGAGGAGGTGGATGCCTCATTTTTAATATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGGGAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGGCTTCTTCAGATGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCTTCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTTCAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGCTGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGCAGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTCAAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGCCCACAT] consensusID : consensus_8484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 808 fasta sequence [TCTCTGAAAGTGGACTAATGTCCGATTTCATAGCAACATGTCTATGATTTCATGGGAGTAAGATGTCCCATCAAAGGTATGATTGTCTGTACACAATAATCTGCTAATTGTGTATACATGCATATCTATTTGTCTACCAACACTACAGTGTTTACCCCCCATAATTTACAAGCGTGCCGCTAATCTACCTTGATCTCCTTGTCCCCAAACCCCAAACCCAGTCAGTGATGCCTCATTTTTAATATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGGGAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGTCTTCTTCAGATGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCTTCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTTCAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGCTGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGCAGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTCAAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGCCCACATGCATAACACCGTCGAGAAAACTCCGGTGTACAATGCTGGTATCCAAGGAAATGAAGTTGCCGTGTCCAAAAACATACCAA] [+] EMBL CB624422 [TCTCTGAAAGTGGACTAATGTCCGATTTCATAGCAACATGTCTATGATTTCATGGGAGTAAGATGTCCCATCAAAGGTATGATTGTCTGTACACAATAATCTGCTAATTGTGTATACATGCATATCTATTTGTCTACCAACACTACAGTGTTTACCCCCCATAATTTACAAGCGTGCCGCTAATCTACCTTGATCTCCTTGTCCCCAAACCCCAAACCCAGTCAGTGATGCCTCATTTTTAATATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGGGAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGTCTTCTTCAGATGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCTTCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTTCAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGCTGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGCAGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTCAAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGCCCACATGCATAACACCGTCGAGAAAACTCCGGTGTACAATGCTGGTATCCAAGGAAATGAAGTTGCCGTGTCCAAAAACATACCAA] [-] EMBL AU056665 [ ttTTTCATANCAACATGTCTATGATTTCATGGGAGTAAGATGTCCCATCAAAGGTATGATTGTCTGTACACAATAATCTGCTAATTGTGTATACATGCATATCTATTTGTCTACCANCACTACAGTGTTTACCCCCCATAATTTACAAGCGTGCCGCTAATCTACCTTGATCNCCTTGTCCCCAAACCCCAAACCCAGTCAGNGATGCCTCATTTTTAATA ] [+] EMBL AI978494 [ CATGGGAGTAAGATGTCCCATCAAAGGTATGATTGTCTGTACACAATAATCTGCTAATTGTGTATACATGCATATCTATTTGTCTACCAACACTACAGTGTTTACCCCCCATAATTTACAAGCGTGCCGCTAATCTACCTTGATCTCCTTGTCCCCAAACCCCAAACCCAGTCAGTGATGCCTCATTTTTAATATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGGGAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGTCTTCTTCAGATGATGCCTTTTTTGCCTTNNCGTTNNACTACAACGTTTTGTCCTNNNTCTCTAATCGnnnnn ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8484#0 TCCTTCACCACCACCACCCACGAGTTCCACACGGAGGTCAGGAGGTGACTGATTCCTTGG 60 consensus_8484#1 ------------------------------------------------------------ consensus_8484#0 CGGCTTCCTCCTCCCGCGAGCTGTGAAAATTTTGTAACTACTACGTACTGGTCGCTCGTC 120 consensus_8484#1 ------------------------------------------------------------ consensus_8484#0 GGAGCAGTAGTGGTTGTGGTGGTAGCAGTGGCATGGCCTCCTCGCTGGCGTCCGCCTCGT 180 consensus_8484#1 -----------------------------------------TCTCTGAAAGTGGACTAAT 19 ** *** * ** * consensus_8484#0 GGGTGGTGCTGCCGCCGGTGCAGGCTCGGGTTGCTGCGGCGGTGGCGGTGGGGCCGACAT 240 consensus_8484#1 GTCCGATTTCATAGCAA---CATGTCTATGATTTCATGGGAGTAA-GATGTCCCATCAAA 75 * * * ** ** * * * ** ** * ** * * consensus_8484#0 GCCGCGTGCTGCTAGCCTACACGCCGCTGCTGTCCGGGTCGGCGCNGCGGCGGGTGGTGG 300 consensus_8484#1 GGTATG-ATTGTCTGTACACAATAATCTGCTAATTGTGT--ATACATGCATATCTATTTG 132 * * ** * *** ***** * ** * * * * consensus_8484#0 GGCGGCCTCTCGCNCCGCCGCGGTGCTCGGCGCTCGANGATCCCGGCCCCAGCGACGGCG 360 consensus_8484#1 -------TCTACCAACACTACAGTGTTTACCCCCCATAATTTACAAGCGTGCCGCTAATC 185 *** * * * * *** * * * * * * * ** consensus_8484#0 GGGAGGGGAACGGCAGGGTGGTGGAGGAGGGGGAGGAGGAGGTGGATGCCTCATTTTTAA 420 consensus_8484#1 TACCTTG--ATCTCCTTGTCCCCAAACCCCAAACCCAGTCAGTG-ATGCCTCATTTTTAA 242 * * * ** * ** *** *************** consensus_8484#0 TATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGG 480 consensus_8484#1 TATGTATGAGGCATCTTCCTATATTACAGACGATGCCCCAAAAGGCAAATGCACGTATGG 302 ************************************************************ consensus_8484#0 GAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGGCTTCTTCAGA 540 consensus_8484#1 GAGTAGGAAGCTTTCTGCATCAACTTTAGCGTCTTCCTCTCTCTATTTGTCTTCTTCAGA 362 ************************************************* ********** consensus_8484#0 TGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCT 600 consensus_8484#1 TGATGCCTTTTTTGCCTTGGCGTTGGACTACAACGTTTTGTCCTTCCTCTCTAATCGGCT 422 ************************************************************ consensus_8484#0 TCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTT 660 consensus_8484#1 TCCTATATTCTTCCTTGAATCGACTGGGATAGCAGACAACGAGAGGTAATCCTGTCGTTT 482 ************************************************************ consensus_8484#0 CAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGC 720 consensus_8484#1 CAGCGGGGTTTCTAAGGTATTGCAACTGCGCGTCTTAACTTTCTTGGATTTTTCAGGAGC 542 ************************************************************ consensus_8484#0 TGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGC 780 consensus_8484#1 TGACCCAAATAATTGAACAGTTAAGCTGCCACATAATACAAGAGCGGCACCAACCCATGC 602 ************************************************************ consensus_8484#0 AGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTC 840 consensus_8484#1 AGCATTATCCCATCTTTCACCTAGGAGAAACCAAGCAAATGCAGCTCCCCAAACTGGCTC 662 ************************************************************ consensus_8484#0 AAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGC 900 consensus_8484#1 AAGCCCGTAAACAATTGCGGTTTCAGTTGCTGAAACGTCACCCATCGCTACCATCTCTGC 722 ************************************************************ consensus_8484#0 CCACAT------------------------------------------------------ 906 consensus_8484#1 CCACATGCATAACACCGTCGAGAAAACTCCGGTGTACAATGCTGGTATCCAAGGAAATGA 782 ****** consensus_8484#0 -------------------------- consensus_8484#1 AGTTGCCGTGTCCAAAAACATACCAA 808 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||