These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCCCACCTTTTTTTTTTTTATTTAAAAAAAAGCGTTTTGCCCCCCCCCCCCTTTTACGGGGGGTTAACCTGGGGGGGGCAAAAAATCCAAACCCCCCCCTGGGGGTTTTTAAAAACCCCGTTCCCCGGAAATTCCCCCTGCCCCCAATTGGGGGATTTTTTTCCCCTTTAACCCGGGAAAAAAAAGGGCCCCCCCCCCTTCCCAAATTTTTAAAATTTTAGAAAAAAAAGGGTTTTTTTTTTTTTTCCCCCTTAACCCCATTTAAGGGCCCAGGGGCAAATTTTTTAAACCCCGGGGGACTATCCCCTTTAGGGGGGGTAAATTTTGACCTGGGGGAAAAAAGGGCCAAACCGGTTCCCGGGGGAAAAATGTTTCCCCCTCAAAATTCCCCAAAAAAAACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGGCCCCCCCCCCTTTAATGGGGGGGCCCCCCCC] [+] EMBL CF315372 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCCCACCTTTTTTTTTTTTATTTAAAAAAAAGCGTTTTGCCCCCCCCCCCCTTTTACGGGGGGTTAACCTGGGGGGGGCAAAAAATCCAAACCCCCCCCTGGGGGTTTTTAAAAACCCCGTTCCCCGGAAATTCCCCCTGCCCCCAATTGGGGGATTTTTTTCCCCTTTAACCCGGGAAAAAAAAGGGCCCCCCCCCCTTCCCAAATTTTTAAAATTTTAGAAAAAAAAGGGTTTTTTTTTTTTTTCCCCCTTAACCCCATTTAAGGGCCCAGGGGCAAATTTTTTAAACCCCGGGGGACTATCCCCTTTAGGGGGGGTAAATTTTGACCTGGGGGAAAAAAGGGCCAAACCGGTTCCCGGGGGAAAAATGTTTCCCCCTCAAAATTCCCCAAAAAAAACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGGCCCCCCCCCCTTTAATGGGGGGGCCCCCCCC] consensusID : consensus_849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAACCGGGCAAAAAAAAAATTTTCTCCCCCTCCCCCCCATGGAAGGGCCCAGGGGCAAATTTTTTAAACCCCGGGGGACTACCCCCTTTAGGGGGGGTAAATTTGGACCTGGGGGAAAAAAGGGGAAAAACGGTTCCCGGGGGAAAATGGTTTCCCCCCCAAAATCCCCCCAAAAAAAAAACCCGGAAACAAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGACCCACCCCCCATTATTGGGGGGGCCCCCCC] [+] EMBL CF328937 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAACCGGGCAAAAAAAAAATTTTCTCCCCCTCCCCCCCATGGAAGGGCCCAGGGGCAAATTTTTTAAACCCCGGGGGACTACCCCCTTTAGGGGGGGTAAATTTGGACCTGGGGGAAAAAAGGGGAAAAACGGTTCCCGGGGGAAAATGGTTTCCCCCCCAAAATCCCCCCAAAAAAAAAACCCGGAAACAAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGACCCACCCCCCATTATTGGGGGGGCCCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_849#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTT 60 consensus_849#1 ------------------------------------------------------------ consensus_849#0 TTTTTTTTTTTTTTTTTTTTCCCCCCACCTTTTTTTTTTTTATTTAAAAAAAAGCGTTTT 120 consensus_849#1 ------------------------------------------------------------ consensus_849#0 GCCCCCCCCCCCCTTTTACGGGGGGTTAACCTGGGGGGGGCAAAAAATCCAAACCCCCCC 180 consensus_849#1 ------------------------------------------------------------ consensus_849#0 CTGGGGGTTTTTAAAAACCCCGTTCCCCGGAAATTCCCCCTGCCCCCAATTGGGGGATTT 240 consensus_849#1 ---------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTT 27 ** * ** *** consensus_849#0 TTTTCCCCTTTAACCCGGGAAAAAAAAGGGCCCCCCCCCCTTCCCAAATTTTTAAAATTT 300 consensus_849#1 TTTTTTTTTTTTTTTT--------------TTTTTTTTTTTTTTTTTTTTTTTAAAACAA 73 **** *** ** ********* consensus_849#0 TAGAAAAAAAAGGGTTTTTTTTTTTTTTCCCCCTTAACCCCATTTAAGGGCCCAGGGGCA 360 consensus_849#1 CCGGGCAAAAAAAAAATTTTCT------CCCCCTCCCCCCCATGGAAGGGCCCAGGGGCA 127 * ***** **** * ****** ****** *************** consensus_849#0 AATTTTTTAAACCCCGGGGGACTATCCCCTTTAGGGGGGGTAAATTTTGACCTGGGGGAA 420 consensus_849#1 AATTTTTTAAACCCCGGGGGACTACCCCCTTTAGGGGGGGTAAATTTGGACCTGGGGGAA 187 ************************ ********************** ************ consensus_849#0 AAAAGGGCCAAACCGGTTCCCGGGGGAAAAATGTTTCCCCCTCAAAATTCCCCAAAAAAA 480 consensus_849#1 AAAAGGGGAAAAACGGTTCCCGGGGGAAAATGGTTTCCCCCCCAAAATCCCCCCAAAAAA 247 ******* *** ***************** ********* ****** **** ****** consensus_849#0 ACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGGCCCCCCCCCCTTT 540 consensus_849#1 AAAACCCGGAAACAAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGACCCACCCCCCATT 307 * ********* ************************* ******** *** ****** ** consensus_849#0 AATGGGGGGGCCCCCCCC 558 consensus_849#1 ATTGGGGGGGCCCCCCC- 324 * *************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||