Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8501 cluster # 8501       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8501#0 length = 2201 sequences # 4  
consensus_8501#1 length = 841 sequences # 1  

consensusID : consensus_8501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2201
fasta sequence
                              [CCTTCCTTCGAACCGCTCGCGCTTGCTTTCCTTCCGCCGACGCCTCCCACCTCTTCCTCCGCCGCGCCTCCACAGCCGGCGCCCCCATCGCCGCGCAGTCCTCCTCTTCGCCGCACCTCCCTCCTCTTCGCCGCGCCTCCACCGCCGGCAACACCGCCGCGCCTCCAATCTCCGGTTCGCCACCAATACGGAGTCGCTTGGTCCCCGCCTCGCCGGTCTCCTCCGACAACACCGCGCGCGCCGCCGAAACACCCACGACCGCGCCACCACCGATCCGGAGTCGCATCGCGCCGGATCCCCGCACCGCACGCATCGCGCATCCATCACCTCGCTACCCTCGCTCAAGCTCCATCGCACGCCGCCCTTCTCCGCCCGCGCACCGCCTCCTACACGCTCTCCTTCCTCTTCTCCCCATTGCTCGCCTCTCCAATGCCCGCTCGCACCGCGCAGCCGCATCCATCCTCCACGCTTCATCTGCCGCACGCGCCCCATTCCGTCCGCTGAGCTTCACGCCTCCCTACCCCTCAGCAGTCAGCACCTTTATCTCTCCCCCTCAGCCCTAATTTATCTGATCCACGAAGGTCTCTCCTCCAATCCAGTCGAAAGAGGTAGGAACCGAACCGCCGCCACCTCCAGTTTGCTGTGCCACGATCTGCCGCCCAGATGTCCTCTCCGCCCCAGGTGTCCTCGCCGTCAACTCCACCTTTTCGCAATCGCACCGCAACTCCACAACTTTTTCTTCTTTGGTAGCTTTTGGTTTTGCAGGGTGAATTGTAGCAAATTAATGAGGTTCTTGATCATGGCGGCCGTCCGGTGGGTGGTTCTTGCATACATCGT-CGTCGTCAGCTGCGACGACAGTGAGCATGTGCTGTTGAGGATTGCCATCGAGAGGGTTGCTGTTGTTGATTCAGCTAGCGTTGGTGTTCACTAATGTTTC-TTGGCTTGAANGTTAATTTGCTCATTTGTTTACATACGTCATACCATGAAAGCTGCTTAATTATTAGCTATCTCCAAGGGATGATTATATATCGTAGTCTCGATCACCTTCTGTAAGATTAAGATCAGTGAAATTTTATGAATTACCTTTTTGTTGTGGCTATTTATGTTTCAGGGTCCAGTACTGATTGGGTGGTGGTTGAGTTCTTCCATCTGAAACCCTCGATGACGATTAGCTTTAGGATTTTGGTCAGCTGCAAGCTTGTGCTAATTTACATACATGATACATCTCACCTATAATTGCATACTAGCTAGGACTACGTATGGAACAAGTAGATGGTAGTACCTGAACATTTCTAGCTCTGAAATATGCCAGCCTGAATATTATGGAGACCTCCCACCCTGTCTGTGTACAACACCTGTGAAGGTTGGTGCTCTCCTTTAATTTCCATGTCAATCTATGGATGATGCACCATGTATTGAGTTTTGGAAAGTTATATGCAGTTCCAGGTTGCAAGTTTCAAATGATGCCTATAAAAGAAGTGGCAAGGGGCAAGGGCTCCTTGATGCTGCAATTACTGAACAAGAGAGAATAGTTCATATTTGCACTCTTTTTAGGAGGTATTTCTGCTGTAGGATTTCAGTATATTATCTCACATTTTTCACAATTTTTGAAAGTGGCTTTTCCTGACAATTTTTCACACTTTTAGCATCCAAAACTGATTGTTGTCTCAAACAAAGTATCCTTTGAGAATCCAAAGGCACCCGTCTACTCTCCGTTACAGCAAAGGAGATCCTAGAATGAAGTGAGCCCAATCTCCTTTCTTATTTACCAATGGAAGTGGACATGTTAATTGTTTAAATCGGTCATTTAGCTCACGTTTTACTTGTTCAGGCAGAAATAGATGGTCCTGACATGTATGGAAACTATGAGCTATTTCTGCATGAACAAGTCAAACATGAGCTAAAGGAGTGAACTAAGCAATTAATTCTTTTAGGTAACACATATATCTGTTTGGGAAACAAAGAAATACTCAGTTCAGTGCCAAAGCAAATACAAGTCCATATCAAAGTTATCATACTGCCAGAGGTCTAAAGATGAAACCTTTTTTTCCTAACAAATTAGAAAATAGAGCATATGATGTCCAGAAATACCTGCAAATGTGATCAACAAAATGTCGTCTTCTTTGTAGAACTTAAAATTTTGGAAGCTTTTAATCAAAACCTGGGACGTCTGACCTTCATTTTTTTTTAACAAAGTCTGA]

[+] EMBL CB677683             [CCTTCCTTCGAACCGCTCGCGCTTGCTTTCCTTCCGCCGACGCCTCCCACCTCTTCCTCCGCCGCGCCTCCACAGCCGGCGCCCCCATCGCCGCGCAGTCCTCCTCTTCGCCGCACCTCCCTCCTCTTCGCCGCGCCTCCACCGCCGGCAACACCGCCGCGCCTCCAATCTCCGGTTCGCCACCAATACGGAGTCGCTTGGTCCCCGCCTCGCCGGTCTCCTCCGACAACACCGCGCGCGCCGCCGAAACACCCACGACCGCGCCACCACCGATCCGGAGTCGCATCGCGCCGGATCCCCGCACCGCACGCATCGCGCATCCATCACCTCGCTACCCTCGCTCAAGCTCCATCGCACGCCGCCCTTCTCCGCCCGCGCACCGCCTCCTACACGCTCTCCTTCCTCTTCTCCCCATTGCTCGCCTCTCCAATGCCCGCTCGCACCGCGCAGCCGCATCCATCCTCCACGCTTCATCTGCCGCACGCGCCCCATTCCGTCCGCTGAGCTTCACGCCTCCCTACCCCTCAGCAGTCAGCACCTTTATCTCTCCCCCTCAGCCCTAATTTATCTGATCCACGAAGGTCTCTCCTCCAATCCAGTCGAAAGAGGTAGGAACCGAACCGCCGCCACCTCCAGTTTGCTGTGCCACGATCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK069059             [                                             CCCACCTCTTCCTCCGCCGCGCCTCCACAGCCGGCGCCCCCATCGCCGCGCAGTCCTCCTCTTCGCCGCACCTCCCTCCTCTTCGCCGCGCCTCCACCGCCGGCAACACCGCCGCGCCTCCAATCTCCGGTTCGCCACCAATACGGAGTCGCTTGGTCCCCGCCTCGCCGGTCTCCTCCGACAACACCGCGCGCGCCGCCGAAACACCCACGACCGCGCCACCACCGATCCGGAGTCGCATCGCGCCGGATCCCCGCACCGCACGCATCGCGCATCCATCACCTCGCTACCCTCGCTCAAGCTCCATCGCACGCCGCCCTTCTCCGCCCGCGCACCGCCTCCTACACGCTCTCCTTCCTCTTCTCCCCATTGCTCGCCTCTCCAATGCCCGCTCGCACCGCGCAGCCGCATCCATCCTCTACGCTTCATCTGCCGCACGCGCCCCATTCCGTCCGCTGAGCTTCACGCCTCCCTACCCCTCAGCAGTCAGCACCTTTATCTCTCCCCCTCAGCCCTAATTTATCTGATCCACGAAGGTCTCTCCTCCAATCCAGTCGAAAGAGGTAGGAACCGAACCGCCGCCACCTCCAGTTTGCTGTGCCACGATCTGCCGCCCAGATGTCCTCTCCGCCCCAGGTGTCCTCGCCGTCAACTCCACCTTTTCGCAATCGCACCGCAACTCCACAACTTTTTCTTCTTTGGTAGCTTTTGGTTTTGCAGGGTGAATTGTAGCAAATTAATGAGGTTCTTGATCATGGCGGCCGTCCGGTGGGTGGTTCTTGCATACATCGT CGTCGTCAGCTGCGACGACAGTGAGCATGTGCTGTTGAGGATTGCCATCGAGAGGGTTGCTGTTGTTGATTCAGCTAGCGTTGGTGTTCACTAATGTTTC TTGGCTTGAAGGTTAATTTGCTCATTTGTTTACATACGTCATACCATGAAAGCTGCTTAATTATTAGCTATCTCCAAGGCATGATTATATATCGTAGTCTCGATCACCTTCTGTAAGATTAAGATCAGTGAAATTTTATGAATTACCTTTTTGTTGTGGCTATTTATGTTTCAGGGTCCAGTACTGATTGGGTGGTGGTTGAGTTCTTCCATCTGAAACCCTCGATGACGATTAGCTTTAGGATTTTGGTCAGCTGCAAGCTTGTGCTAATTTACATACATGATACATCTCACCTATAATTGCATACTAGCTAGGACTACGTATGGAACAAGTAGATGGTAGTACCTGAACATTTCTAGCTCTGAAATATGCCAGCCTGAATATTATGGAGACCTCCCACCCTGTCTGTGTACAACACCTGTGAAGGTTGGTGCTCTCCTTTAATTTCCATGTCAATCTATGGATGATGCACCATGTATTGAGTTTTGGAAAGTTATATGCAGTTCCAGGTTGCAAGTTTCAAATGATGCCTATAAAAGAAGTGGCAAGGGGCAAGGGCTCCTTGATGCTGCAATTACTGAACAAGAGAGAATAGTTCATATTTGCACTCTTTTTAGGAGGTATTTCTGCTGTAGGATTTCAGTATATTATCTCACATTTTTCACAATTTTTGAAAGTGGCTTTTCCTGACAATTTTTCACACTTTTAGCATCCAAAACTGATTGTTGTCTCAAACAAAGTATCCTTTGAGAATCCAAAGGCACCCGTCTACTCTCCGTTACAGCAAAGGAGATCCTAGAATGAAGTGAGCCCAATCTCCTTTCTTATTTACCAATGGAAGTGGACATGTTAATTGTTTAAATCGGTCATTTAGCTCACGTTTTACTTGTTCAGGCAGAAATAGATGGTCCTGACATGTATGGAAACTATGAGCTATTTCTGCATGAACAAGTCAAACATGAGCTAAAGGAGTGAACTAAGCAATTAATTCTTTTAGGTAACACATATATCTGTTTGGGAAACAAAGAAATACTCAGTTCAGTGCCAAAGCAAATACAAGTCCATATCAAAGTTATCATACTGCCAGAGGTCTAAAGATGAAACCTTTTTTTCCTAACAAATTAGAAAATAGAGCATATGATGTCCAGAAATACCTGCAAATGTGATCAACAAAATGTCGTCTTCTTTGTAGAACTTAAAATTTTGGAAGCTTTTAATCAAAACCTGGGACGTCTGACCTTCATTTTTTTTTAACAAAGTCTGA]
[+] EMBL AF074791             [                                                                                                                                                                                                                                                                                                                                                                         CCCTTCTCCGCCCGCGCACCGCCTCCTACACGCTCTCCTTCCTCTTCTCCCCATTGCTCGCCTCTCCAATGCCCGCTCGCACCGCGCAGCCGCATCCATCCTCCACGCTTCATCTGCCGCACGCGCCCCATTCCGTCCGCTGAGCTTCACGCCTCCCTACCCCTCAGCAGTCAGCACCTTTATCTCTCCCCCTCAGCCCTAATTTATCTGATCCACGAAGGTCTCTCCTCCAATCCAGTCGAAAGAGGTAGGAACCGAACCGCCGCCACCTCCAGTTTGCTGTGCCACGATCTGCCGCCCAGATGTCCTCTCCGCCCCAGGTGTCCTCGCCGTCAACTCCACCTTTTCGCAATCGCACCGCAACTCCACAACTTTTTCTTCTTTGGTAGCTTTTGGTTTTGCAGGGTGAATTGTANCAAATTAATGAGGTTCTTGATCATGGCGGCCGTCCGGTGGGTGGTTCTTGCATACATCGTCCGTCGTCAGCTGCGACGACAGTGAGCATGTGCTGTTGANGATTGCCATCGAGAAGGTTGCTGTTGTTGATTCANCTAGCGTTGGTGTTCACTAATGTTTC TTGGCTTGAANGTTAATTTGCTCATTTGTTTACATACGTCATACCATGAAAGCTGCTTAATTATTAGCTATCTCCAAGGGATGATTATATATCGTAGTCTCGATCA CTTCTGTtaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AF074807             [                                                                                                                                                                                                                                                                                                                                                                            TTCTCCGCCCGCGCACCGCCTCCTACACGCTCTCCTTCCTCTTCTCCCCATTGCTCGCCTCTCCAATGCCCGCTCGCACCGCGCAGCCGCATCCATCCTCCACGCTTCATCTGCCGCACGCGCCCCATTCCGTCCGCTGAGCTTCACGCCTCCCTACCCCTCAGCAGTCAGCACCTTTATCTCTCCCCCTCAGCCCTAATTTATCTGATCCACGAAGGTCTCTCCTCCAATCCAGTCGAAAGAGGTAGGAACCGAACCGCCGCCACCTCCAGTTTGCTGTGCCACGATCTGCCGCCCAGATGTCCTCTCCGCCCCAGGTGTCCTCGCCGTCAACTCCACCTTTTCGCAATCGCACCGCAACTCCACAACTTTTTCTTCTTTGGTAGCTTTTGGTTTTGCAGGGTGAATTGTAGCAAATTAATGAGGTTCTTGATCATGGCGGCCGTCCGGTGGGTGGTTCTTGCATACATCGT CGTCGTCAGCTGCGACGACAGTGAGCATGTGCTGTTGAGGATTGCCATCGAGANGGTTGCTGTTGTTGATTCAGCTAGCGTTGGTGTTCACTAATGTTTCTTTGGCTTGAANGTTAATTTGCTCATTTGTTTACATACGTCATACCATGAAAGCTGCTTAATTATTAGCTATCTCCAAGGNATGATTATATATCGTAGTCTCGATCANCTTCTGTAAGATTAAGATtaagt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_8501#0 CCTTCCTTCGAACCGCTCGCGCTTGCTTTCCTTCCGCCGACGCCTCCCACCTCTTCCTCC GCCGCGCCTCCACAGCCGGCGCCCCCATCGCCGCGCAGTCCTCCTCTTCGCCGCACCTCC CTCCTCTTCGCCGCGCCTCCACCGCCGGCAACACCGCCGCGCCTCCAATCTCCGGTTCGC CACCAATACGGAGTCGCTTGGTCCCCGCCTCGCCGGTCTCCTCCGACAACACCGCGCGCG CCGCCGAAACACCCACGACCGCGCCACCACCGATCCGGAGTCGCATCGCGCCGGATCCCC GCACCGCACGCATCGCGCATCCATCACCTCGCTACCCTCGCTCAAGCTCCATCGCACGCC GCCCTTCTCCGCCCGCGCACCGCCTCCTACACGCTCTCCTTCCTCTTCTCCCCATTGCTC GCCTCTCCAATGCCCGCTCGCACCGCGCAGCCGCATCCATCCTCCACGCTTCATCTGCCG CACGCGCCCCATTCCGTCCGCTGAGCTTCACGCCTCCCTACCCCTCAGCAGTCAGCACCT TTATCTCTCCCCCTCAGCCCTAATTTATCTGATCCACGAAGGTCTCTCCTCCAATCCAGT CGAAAGAGGTAGGAACCGAACCGCCGCCACCTCCAGTTTGCTGTGCCACGATCTGCCGCC CAGATGTCCTCTCCGCCCCAGGTGTCCTCGCCGTCAACTCCACCTTTTCGCAATCGCACC GCAACTCCACAACTTTTTCTTCTTTGGTAGCTTTTGGTTTTGCAGGGTGAATTGTAGCAA ATTAATGAGGTTCTTGATCATGGCGGCCGTCCGGTGGGTGGTTCTTGCATACATCGTCGT CGTCAGCTGCGACGACAGTGAGCATGTGCTGTTGAGGATTGCCATCGAGAGGGTTGCTGT TGTTGATTCAGCTAGCGTTGGTGTTCACTAATGTTTCTTGGCTTGAANGTTAATTTGCTC ATTTGTTTACATACGTCATACCATGAAAGCTGCTTAATTATTAGCTATCTCCAAGGGATG ATTATATATCGTAGTCTCGATCACCTTCTGTAAGATTAAGATCAGTGAAATTTTATGAAT TACCTTTTTGTTGTGGCTATTTATGTTTCAGGGTCCAGTACTGATTGGGTGGTGGTTGAG TTCTTCCATCTGAAACCCTCGATGACGATTAGCTTTAGGATTTTGGTCAGCTGCAAGCTT GTGCTAATTTACATACATGATACATCTCACCTATAATTGCATACTAGCTAGGACTACGTA TGGAACAAGTAGATGGTAGTACCTGAACATTTCTAGCTCTGAAATATGCCAGCCTGAATA TTATGGAGACCTCCCACCCTGTCTGTGTACAACACCTGTGAAGGTTGGTGCTCTCCTTTA ATTTCCATGTCAATCTATGGATGATGCACCATGTATTGAGTTTTGGAAAGTTATATGCAG TTCCAGGTTGCAAGTTTCAAATGATGCCTATAAAAGAAGTGGCAAGGGGCAAGGGCTCCT TGATGCTGCAATTACTGAACAAGAGAGAATAGTTCATATTTGCACTCTTTTTAGGAGGTA TTTCTGCTGTAGGATTTCAGTATATTATCTCACATTTTTCACAATTTTTGAAAGTGGCTT TTCCTGACAATTTTTCACACTTTTAGCATCCAAAACTGATTGTTGTCTCAAACAAAGTAT CCTTTGAGAATCCAAAGGCACCCGTCTACTCTCCGTTACAGCAAAGGAGATCCTAGAATG AAGTGAGCCCAATCTCCTTTCTTATTTACCAATGGAAGTGGACATGTTAATTGTTTAAAT CGGTCATTTAGCTCACGTTTTACTTGTTCAGGCAGAAATAGATGGTCCTGACATGTATGG AAACTATGAGCTATTTCTGCATGAACAAGTCAAACATGAGCTAAAGGAGTGAACTAAGCA ATTAATTCTTTTAGGTAACACATATATCTGTTTGGGAAACAAAGAAATACTCAGTTCAGT GCCAAAGCAAATACAAGTCCATATCAAAGTTATCATACTGCCAGAGGTCTAAAGATGAAA CCTTTTTTTCCTAACAAATTAGAAAATAGAGCATATGATGTCCAGAAATACCTGCAAATG TGATCAACAAAATGTCGTCTTCTTTGTAGAACTTAAAATTTTGGAAGCTTTTAATCAAAA CCTGGGACGTCTGACCTTCATTTTTTTTTAACAAAGTCTGA



consensusID : consensus_8501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 841
fasta sequence
                              [TGGGTGGCTTTTGCATACATCGTCGTCGTCAGCTGCGACGACAGTGAGCATGTGCTGTTGAGGATTGCCATCGAGAGGGTTGCTGTTGTTGATTCAGCTAGCGTTGGTGTTCACTAATGTTTCTTGGCTTGAAGGGTCCAGTACTGATTGGGTGGTGGTTGAGTTCTTCCATCTGAAACCCTCGATGACGATTAGCTTTAGGATTTTGGTCAGCTGCAAGCTTGTGCTAATTTACATACATGATACATCTCACCTATAATTGCATACTAGCTAGGACTACGTATGGAACAAGTAGATGGTAGTACCTGAACATTTCTAGCTCTGAAATATGCCAGCCTGAATATTATGGAGACCTCCCACCCTGTCTGTGTACAACACCTGTGAAGTTCCAGGTTGCAAGTTTCAAATGATGCCTATAAAAGAAGTGGCAAGGGGCAAGGGCTCCTTGATGCTGCAATTACTGAACAAGAGAGAATAGTTCATATTTGCACTCTTTTTAGGAGCATCCAAAACTGATTGTTGTCTCAAACAAAGTATCCTTTGAGAATCCAAAGGCACCCGTCTACTCTCCGTTACAGCAAAGGAGATCCTAGAATGAAGTGAGCCCAATCTCCTTTCTTATTTACCAATGGAAGTGGACATGTTAATTGTTTAAATCGGTCATTTAGCTCACGTTTTACTTGTTCAGGCAGAAATAGATGGTCCTGACATGTATGGAAACTATGAGCTATTTCTGCATGAACAAGTCAAACATGAGCTAAAGGAGTGAACTAAGCAATTAATTCTTTTAGGTTACACATATATCTGTTTGGGAAACAAAGAAATACTCAGTTCAGTGCCA]

[+] EMBL CB674836             [TGGGTGGCTTTTGCATACATCGTCGTCGTCAGCTGCGACGACAGTGAGCATGTGCTGTTGAGGATTGCCATCGAGAGGGTTGCTGTTGTTGATTCAGCTAGCGTTGGTGTTCACTAATGTTTCTTGGCTTGAAGGGTCCAGTACTGATTGGGTGGTGGTTGAGTTCTTCCATCTGAAACCCTCGATGACGATTAGCTTTAGGATTTTGGTCAGCTGCAAGCTTGTGCTAATTTACATACATGATACATCTCACCTATAATTGCATACTAGCTAGGACTACGTATGGAACAAGTAGATGGTAGTACCTGAACATTTCTAGCTCTGAAATATGCCAGCCTGAATATTATGGAGACCTCCCACCCTGTCTGTGTACAACACCTGTGAAGTTCCAGGTTGCAAGTTTCAAATGATGCCTATAAAAGAAGTGGCAAGGGGCAAGGGCTCCTTGATGCTGCAATTACTGAACAAGAGAGAATAGTTCATATTTGCACTCTTTTTAGGAGCATCCAAAACTGATTGTTGTCTCAAACAAAGTATCCTTTGAGAATCCAAAGGCACCCGTCTACTCTCCGTTACAGCAAAGGAGATCCTAGAATGAAGTGAGCCCAATCTCCTTTCTTATTTACCAATGGAAGTGGACATGTTAATTGTTTAAATCGGTCATTTAGCTCACGTTTTACTTGTTCAGGCAGAAATAGATGGTCCTGACATGTATGGAAACTATGAGCTATTTCTGCATGAACAAGTCAAACATGAGCTAAAGGAGTGAACTAAGCAATTAATTCTTTTAGGTTACACATATATCTGTTTGGGAAACAAAGAAATACTCAGTTCAGTGCCA]


>consensus_8501#1 TGGGTGGCTTTTGCATACATCGTCGTCGTCAGCTGCGACGACAGTGAGCATGTGCTGTTG AGGATTGCCATCGAGAGGGTTGCTGTTGTTGATTCAGCTAGCGTTGGTGTTCACTAATGT TTCTTGGCTTGAAGGGTCCAGTACTGATTGGGTGGTGGTTGAGTTCTTCCATCTGAAACC CTCGATGACGATTAGCTTTAGGATTTTGGTCAGCTGCAAGCTTGTGCTAATTTACATACA TGATACATCTCACCTATAATTGCATACTAGCTAGGACTACGTATGGAACAAGTAGATGGT AGTACCTGAACATTTCTAGCTCTGAAATATGCCAGCCTGAATATTATGGAGACCTCCCAC CCTGTCTGTGTACAACACCTGTGAAGTTCCAGGTTGCAAGTTTCAAATGATGCCTATAAA AGAAGTGGCAAGGGGCAAGGGCTCCTTGATGCTGCAATTACTGAACAAGAGAGAATAGTT CATATTTGCACTCTTTTTAGGAGCATCCAAAACTGATTGTTGTCTCAAACAAAGTATCCT TTGAGAATCCAAAGGCACCCGTCTACTCTCCGTTACAGCAAAGGAGATCCTAGAATGAAG TGAGCCCAATCTCCTTTCTTATTTACCAATGGAAGTGGACATGTTAATTGTTTAAATCGG TCATTTAGCTCACGTTTTACTTGTTCAGGCAGAAATAGATGGTCCTGACATGTATGGAAA CTATGAGCTATTTCTGCATGAACAAGTCAAACATGAGCTAAAGGAGTGAACTAAGCAATT AATTCTTTTAGGTTACACATATATCTGTTTGGGAAACAAAGAAATACTCAGTTCAGTGCC A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8501#0      CCTTCCTTCGAACCGCTCGCGCTTGCTTTCCTTCCGCCGACGCCTCCCACCTCTTCCTCC 60
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      GCCGCGCCTCCACAGCCGGCGCCCCCATCGCCGCGCAGTCCTCCTCTTCGCCGCACCTCC 120
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      CTCCTCTTCGCCGCGCCTCCACCGCCGGCAACACCGCCGCGCCTCCAATCTCCGGTTCGC 180
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      CACCAATACGGAGTCGCTTGGTCCCCGCCTCGCCGGTCTCCTCCGACAACACCGCGCGCG 240
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      CCGCCGAAACACCCACGACCGCGCCACCACCGATCCGGAGTCGCATCGCGCCGGATCCCC 300
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      GCACCGCACGCATCGCGCATCCATCACCTCGCTACCCTCGCTCAAGCTCCATCGCACGCC 360
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      GCCCTTCTCCGCCCGCGCACCGCCTCCTACACGCTCTCCTTCCTCTTCTCCCCATTGCTC 420
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      GCCTCTCCAATGCCCGCTCGCACCGCGCAGCCGCATCCATCCTCCACGCTTCATCTGCCG 480
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      CACGCGCCCCATTCCGTCCGCTGAGCTTCACGCCTCCCTACCCCTCAGCAGTCAGCACCT 540
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      TTATCTCTCCCCCTCAGCCCTAATTTATCTGATCCACGAAGGTCTCTCCTCCAATCCAGT 600
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      CGAAAGAGGTAGGAACCGAACCGCCGCCACCTCCAGTTTGCTGTGCCACGATCTGCCGCC 660
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      CAGATGTCCTCTCCGCCCCAGGTGTCCTCGCCGTCAACTCCACCTTTTCGCAATCGCACC 720
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      GCAACTCCACAACTTTTTCTTCTTTGGTAGCTTTTGGTTTTGCAGGGTGAATTGTAGCAA 780
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      ATTAATGAGGTTCTTGATCATGGCGGCCGTCCGGTGGGTGGTTCTTGCATACATCGTCGT 840
consensus_8501#1      ----------------------------------TGGGTGGCTTTTGCATACATCGTCGT 26
                                                        ******* * ****************

consensus_8501#0      CGTCAGCTGCGACGACAGTGAGCATGTGCTGTTGAGGATTGCCATCGAGAGGGTTGCTGT 900
consensus_8501#1      CGTCAGCTGCGACGACAGTGAGCATGTGCTGTTGAGGATTGCCATCGAGAGGGTTGCTGT 86
                      ************************************************************

consensus_8501#0      TGTTGATTCAGCTAGCGTTGGTGTTCACTAATGTTTCTTGGCTTGAANGTTAATTTGCTC 960
consensus_8501#1      TGTTGATTCAGCTAGCGTTGGTGTTCACTAATGTTTCTTGGCTTGAAGG----------- 135
                      *********************************************** *           

consensus_8501#0      ATTTGTTTACATACGTCATACCATGAAAGCTGCTTAATTATTAGCTATCTCCAAGGGATG 1020
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      ATTATATATCGTAGTCTCGATCACCTTCTGTAAGATTAAGATCAGTGAAATTTTATGAAT 1080
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      TACCTTTTTGTTGTGGCTATTTATGTTTCAGGGTCCAGTACTGATTGGGTGGTGGTTGAG 1140
consensus_8501#1      --------------------------------GTCCAGTACTGATTGGGTGGTGGTTGAG 163
                                                      ****************************

consensus_8501#0      TTCTTCCATCTGAAACCCTCGATGACGATTAGCTTTAGGATTTTGGTCAGCTGCAAGCTT 1200
consensus_8501#1      TTCTTCCATCTGAAACCCTCGATGACGATTAGCTTTAGGATTTTGGTCAGCTGCAAGCTT 223
                      ************************************************************

consensus_8501#0      GTGCTAATTTACATACATGATACATCTCACCTATAATTGCATACTAGCTAGGACTACGTA 1260
consensus_8501#1      GTGCTAATTTACATACATGATACATCTCACCTATAATTGCATACTAGCTAGGACTACGTA 283
                      ************************************************************

consensus_8501#0      TGGAACAAGTAGATGGTAGTACCTGAACATTTCTAGCTCTGAAATATGCCAGCCTGAATA 1320
consensus_8501#1      TGGAACAAGTAGATGGTAGTACCTGAACATTTCTAGCTCTGAAATATGCCAGCCTGAATA 343
                      ************************************************************

consensus_8501#0      TTATGGAGACCTCCCACCCTGTCTGTGTACAACACCTGTGAAGGTTGGTGCTCTCCTTTA 1380
consensus_8501#1      TTATGGAGACCTCCCACCCTGTCTGTGTACAACACCTGTGAAG----------------- 386
                      *******************************************                 

consensus_8501#0      ATTTCCATGTCAATCTATGGATGATGCACCATGTATTGAGTTTTGGAAAGTTATATGCAG 1440
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      TTCCAGGTTGCAAGTTTCAAATGATGCCTATAAAAGAAGTGGCAAGGGGCAAGGGCTCCT 1500
consensus_8501#1      TTCCAGGTTGCAAGTTTCAAATGATGCCTATAAAAGAAGTGGCAAGGGGCAAGGGCTCCT 446
                      ************************************************************

consensus_8501#0      TGATGCTGCAATTACTGAACAAGAGAGAATAGTTCATATTTGCACTCTTTTTAGGAGGTA 1560
consensus_8501#1      TGATGCTGCAATTACTGAACAAGAGAGAATAGTTCATATTTGCACTCTTTTTAGGAG--- 503
                      *********************************************************   

consensus_8501#0      TTTCTGCTGTAGGATTTCAGTATATTATCTCACATTTTTCACAATTTTTGAAAGTGGCTT 1620
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      TTCCTGACAATTTTTCACACTTTTAGCATCCAAAACTGATTGTTGTCTCAAACAAAGTAT 1680
consensus_8501#1      --------------------------CATCCAAAACTGATTGTTGTCTCAAACAAAGTAT 537
                                                **********************************

consensus_8501#0      CCTTTGAGAATCCAAAGGCACCCGTCTACTCTCCGTTACAGCAAAGGAGATCCTAGAATG 1740
consensus_8501#1      CCTTTGAGAATCCAAAGGCACCCGTCTACTCTCCGTTACAGCAAAGGAGATCCTAGAATG 597
                      ************************************************************

consensus_8501#0      AAGTGAGCCCAATCTCCTTTCTTATTTACCAATGGAAGTGGACATGTTAATTGTTTAAAT 1800
consensus_8501#1      AAGTGAGCCCAATCTCCTTTCTTATTTACCAATGGAAGTGGACATGTTAATTGTTTAAAT 657
                      ************************************************************

consensus_8501#0      CGGTCATTTAGCTCACGTTTTACTTGTTCAGGCAGAAATAGATGGTCCTGACATGTATGG 1860
consensus_8501#1      CGGTCATTTAGCTCACGTTTTACTTGTTCAGGCAGAAATAGATGGTCCTGACATGTATGG 717
                      ************************************************************

consensus_8501#0      AAACTATGAGCTATTTCTGCATGAACAAGTCAAACATGAGCTAAAGGAGTGAACTAAGCA 1920
consensus_8501#1      AAACTATGAGCTATTTCTGCATGAACAAGTCAAACATGAGCTAAAGGAGTGAACTAAGCA 777
                      ************************************************************

consensus_8501#0      ATTAATTCTTTTAGGTAACACATATATCTGTTTGGGAAACAAAGAAATACTCAGTTCAGT 1980
consensus_8501#1      ATTAATTCTTTTAGGTTACACATATATCTGTTTGGGAAACAAAGAAATACTCAGTTCAGT 837
                      **************** *******************************************

consensus_8501#0      GCCAAAGCAAATACAAGTCCATATCAAAGTTATCATACTGCCAGAGGTCTAAAGATGAAA 2040
consensus_8501#1      GCCA-------------------------------------------------------- 841
                      ****                                                        

consensus_8501#0      CCTTTTTTTCCTAACAAATTAGAAAATAGAGCATATGATGTCCAGAAATACCTGCAAATG 2100
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      TGATCAACAAAATGTCGTCTTCTTTGTAGAACTTAAAATTTTGGAAGCTTTTAATCAAAA 2160
consensus_8501#1      ------------------------------------------------------------
                                                                                  

consensus_8501#0      CCTGGGACGTCTGACCTTCATTTTTTTTTAACAAAGTCTGA 2201
consensus_8501#1      -----------------------------------------
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)