These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 550 fasta sequence [TTTTGAAATGAGAACCTATAAAATGATTCAGTAAAGTCAGCTTAACAGTAAAAGTTTACATCAACATCCACAGGACCACAGTAGCTCCCCGTAAAAGATTAATTAAACAATAAGTACCACAGTAGAATTATAACT-GGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCATCAGTTCTACTTGATCTGTAACGACGGGAGTTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAA-TGCTTTAGGATCATCTTCATCCATTTCGCATTGCTCAGTTTCATCAGAGGGACCTGCCGCCAAACCAATGAGAAATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGGCATTGCATCGATTGGCTTCTTCCGGGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGGGGGGCCTCAGGCTCTGGGTCC] [+] EMBL CB657587 [TTTTGAAATGAGAACCTATAAAATGATTCAGTAAAGTCAGCTTAACAGTAAAAGTTTACATCAACATCCACAGGACCACAGTAGCTCCCCGAAAAAGATTAATTAAACTTTAAGTACCACAGTAGAATTATAACT GGTTAGCTCAGATCAAAAAATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAAACAAGGGGACCGTCAATTTTACTCATCATCAGTTCTACTTGATCTGGAACGACGGGAGTTCATCTTCCTGTTGGTTTGGACCTGGGGCGGAAACAA TGCTTTAGGATCATCTTCATCCATTTCGCATTGCTCAGTTTCATCAGAGGGACCTGCCGCCAAACCAATGAGAAATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGGCATTGCATCGATTGGCTTCTTCCGGGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGGGGGGCCTCAGGCTCTGGGTCC] [-] EMBL AK059476 [ GTTTACATCAACATCCACAGGACCACAGTAGCTCCCAGTACAAGATTAATTAAACAATAAGTACCACAGTAGAATTATAACT GGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCATCAGTTCTACTTGATCTGTAACGACGGGAGTTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAA TGCTTTAGGATCATCTTCATCCATTTCGCATTGCTCAGTTTtttttt ] [-] EMBL BI813061 [ tttttttTTAATTAAACAATAAGTACCACAGTAGAATTATAACTGGGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACA TGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAGACAAGGGTAACGTCAATTTTACTCATCATCAGTTCTACTTGATCTGTAACGACGGGAGTTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAAGTGCTTTAGGATCATCTTCATCCATTTCGCATGGCTCAGTTTCATCAGAGGCACCTGCCG CAGACCAATGAGAGATGAGTTTGCATCATGGGA TTGGGACCCTCATCTACTGTCATTG ATCGACTGTCT ] consensusID : consensus_8502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [AAAGAAATATACTGGTACTAGTAGAGTCAAGCAAAGTCANAACATACCCCCTNACTTGAAAGAACCTACCCAAAATGGNACCCTAAAATTGGTAGATTGTATTACAACATNAAACTGAAGAGACAAGGGTACCGTAAATTTACTCATCAATAAGTCCTACTTGATCTGTAACGACGGAAGTTCAATCCTCCGTGTTGGTTTGGACCTGTGGCGGGTAACAATGCTTTAGGATCATCCTCATCCATTCCGCATTGCTCAGTTTCATCAGAGCACCTGCCGCCAGACCAATGAGAGATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGTCATTGCATCGATTGTCTTCTTCCGTGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGTGGTCCTCAGGCTCTGGTTCCATTCTCCTTAATATATCATGCAGGTCGGCAAAAGCTCTCCTGTTAGTTTCATCGTTACATTCTGGAGTGTCCAGAGTGTAACGTGTATACTTTGCAGGGTTCTTAACATAGTCAGGAACC] [-] EMBL AU063695 [AAAGAAATATACTGGTACTAGTAGAGTCAAGCAAAGTCANAACATACCCCCTNACTTGAAAGAACCTACCCAAAATGGNACCCTAAAATTGGTAGATTGTATTACAACATNAAACTGAAGAGACAAGGGTACCGTAAATTTACTCATCAATAAGTCCTACTTGATCTGTAACGACGGAAGTTCAATCCTCCGTGTTGGTTTGGACCTGTGGCGGGTAACAATGCTTTAGGATCATCCTCATCCATTCCGCATTGCTCAGTTTCATCAGAGCACCTGCCGCCAGACCAATGAGAGATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGTCATTGCATCGATTGTCTTCTTCCGTGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGTGGTCCTCAGGCTCTGGTTCCATTCTCCTTAATATATCATGCAGGTCGGCAAAAGCTCTCCTGTTAGTTTCATCGTTACATTCTGGAGTGTCCAGAGTGTAACGTGTATACTTTGCAGGGTTCTTAACATAGTCAGGAACC] consensusID : consensus_8502#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [TTTTTCCATTCCTTTTCTTTTGCGTCTTAAACAATAAGTACCACAGTAGAATTATAACTGGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCATCAGTTCTACTTGATCTGTAACGACGGGAGTTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAATGCTTTAGGATCATCTTCAT] [-] EMBL CA754433 [TTTTTCCATTCCTTTTCTTTTGCGTCTTAAACAATAAGTACCACAGTAGAATTATAACTGGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATATCTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTACAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCATCAGTTCTACTTGATCTGTAACGACGGGAGTTCATCTTCGTGTTGGTTTGGACCTGTGGCGGTAACAATGCTTTAGGATCATCTTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8502#0 TTTTGAAATGAGAACCTATAAAATGATTCAGTAAAGTCAGCTTAACAGTAAAAGTTTACA 60 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 TCAACATCCACAGGACCACAGTAGCTCCCCGTAAAAGATTAATTAAACAATAAGTACCAC 120 consensus_8502#2 ----------------TTTTTCCATTCCTTTTCTTTTGCGTCTTAAACAATAAGTACCAC 44 consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 AGTAGAATTATAACTGGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATAT 180 consensus_8502#2 AGTAGAATTATAACTGGTTAGCTCAGATCAGAAGATCAAAGCAAAAGTACATCAACATAT 104 consensus_8502#1 -AAAGAAATATA-CTGGT--------ACTAGTAGAGTCAAGCAAAGTCANA---ACATAC 47 **** **** ***** * ** *** ******* * * ***** consensus_8502#0 CTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTA 240 consensus_8502#2 CTCCTCAACTTGCATAGCAACTACTCCAACATTGGAACCTCAAATTTGTAGATTGTATTA 164 consensus_8502#1 CCCCTNA-CTTGAA-AGAACCTAC-CCAAAATGGNACCCTAAAATTGGTAGATTGTATTA 104 * *** * **** * ** * **** **** ** * * *** ***** ************* consensus_8502#0 CAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCA-TCAGTTCTACTTG 299 consensus_8502#2 CAACATTAAACTGAAGAGACAAGGGTACCGTCAATTTTACTCATCA-TCAGTTCTACTTG 223 consensus_8502#1 CAACATNAAACTGAAGAGACAAGGGTACCGTAAATTT-ACTCATCAATAAGTCCTACTTG 163 ****** ************************ ***** ******** * *** ******* consensus_8502#0 ATCTGTAACGACGGGAGTTCA--TCTTCGTGTTGGTTTGGACCTGTGGCGG-TAACAATG 356 consensus_8502#2 ATCTGTAACGACGGGAGTTCA--TCTTCGTGTTGGTTTGGACCTGTGGCGG-TAACAATG 280 consensus_8502#1 ATCTGTAACGACGGAAGTTCAATCCTCCGTGTTGGTTTGGACCTGTGGCGGGTAACAATG 223 ************** ****** ** ************************ ******** consensus_8502#0 CTTTAGGATCATCTTCATCCATTTCGCATTGCTCAGTTTCATCAGAGGGACCTGCCGCCA 416 consensus_8502#2 CTTTAGGATCATCTTCAT------------------------------------------ 298 consensus_8502#1 CTTTAGGATCATCCTCATCCATTCCGCATTGCTCAGTTTCATCAGAGC-ACCTGCCGCCA 282 ************* **** consensus_8502#0 AACCAATGAGAAATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGGCATTGCAT 476 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 GACCAATGAGAGATGAGTTTGCATCATTGGATTTGGGACCCTCATCTACTGTCATTGCAT 342 consensus_8502#0 CGATTGGCTTCTTCCGGGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGGGGGGCCT 536 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 CGATTGTCTTCTTCCGTGGGATGAACGTAACTGAAGTAGGTATCTCAACTGGTGGT-CCT 401 consensus_8502#0 CAGGCTCTGGGTCC---------------------------------------------- 550 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 CAGGCTCTGGTTCCATTCTCCTTAATATATCATGCAGGTCGGCAAAAGCTCTCCTGTTAG 461 consensus_8502#0 ------------------------------------------------------------ consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 TTTCATCGTTACATTCTGGAGTGTCCAGAGTGTAACGTGTATACTTTGCAGGGTTCTTAA 521 consensus_8502#0 -------------- consensus_8502#2 -------------- consensus_8502#1 CATAGTCAGGAACC 535 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||