cluster # 8507

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Oryza sativa
cluster # 8507 cluster # 8507 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8507#0 length = 809 sequences # 3

consensus_8507#1 length = 639 sequences # 1
consensus_8507#2 length = 272 sequences # 1

consensusID : consensus_8507#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 809
fasta sequence

                              [GTGATCCTGGCCGTGGCCTCCGCGCTCGGCGTCTCCGGGCCGGCCTTCTACTGGCGCTACAAGAAGGGCTTCGCCTCCTCCTCCTCCTCCTCCTCGGTCTCCGCTTCCGCTGCGGCCGTCGTCTCCCCCTCCTGCCCGCCCTGCAGCTGCGACTGCCCGCCGCCGCTCTCCCTCCAGTCC-ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAA-TGACCCTGAACTTAGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTG-CAGCAGATTGTAGCTGAGGAGCATAGCCATCACATGAATGCCACCCTTGTTGAAGCTAAAAGACAAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGTTTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGTATGTCTATGTATTATCATCAGCTGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACTAGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATGTGGATGACACACTTTGTTTATGATGCAAAAAA]

[+] EMBL CA999482             [GTGATCCTGGCCGTGGCCTCCGCGCTCGGCGTCTCCGGGCCGGCCTTCTACTGGCGCTACAAGAAGGGCTTCGCCTCCTCCTCCTCCTCCTCCTCGGTCTCCGCTTCCGCTGCGGCCGTCGTCTCCCCCTCCTGCCCGCCCTGCAGCTGCGACTGCCCGCCGCCGCTCTCCCTCCAGTCC ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAA T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL BI306384             [                                                                                                                                                                   CGCTCTCCCTCCAGTCC ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAA TGACCCTGAACTTAGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTG CAGCAGATTGTAGCTGAGGAGCATAGCCATCACATGAATGCCACCCTTGTTGAAGCTAAAAGACAAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGTTTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGTATGTCTATGTATTATCATCAGCTGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACTAGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATGTGGATGACAC                      ]
[+] EMBL AU097064             [                                                                                                                                                                              aAGTCCNATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAATTGNCCCTGAACTTAGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTGNCAGCAGATTGTAGCTGAGGAGCATAGCCATCACATGAATGCCACCCTTGTTGAAGCTAAAAGACAAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGTCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGTATGTCTATGTATTATCATCAGCTGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACTAGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATGTGGATGACACACTTTGTTTATGATGCAAAAAA]




>consensus_8507#0
GTGATCCTGGCCGTGGCCTCCGCGCTCGGCGTCTCCGGGCCGGCCTTCTACTGGCGCTAC
AAGAAGGGCTTCGCCTCCTCCTCCTCCTCCTCCTCGGTCTCCGCTTCCGCTGCGGCCGTC
GTCTCCCCCTCCTGCCCGCCCTGCAGCTGCGACTGCCCGCCGCCGCTCTCCCTCCAGTCC
ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAATGACCCTGAACTT
AGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTGCAGCAG
ATTGTAGCTGAGGAGCATAGCCATCACATGAATGCCACCCTTGTTGAAGCTAAAAGACAA
GCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGGAA
GCTAGGGAGCGGTTTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAG
CAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGATAG
CTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCT
GGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGTAT
GTCTATGTATTATCATCAGCTGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACTAGT
ATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATGTGG
ATGACACACTTTGTTTATGATGCAAAAAA

consensusID : consensus_8507#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 639
fasta sequence

                              [GGANTCGCNAGCTTGCTTGGCCGGGACNTGACAGGGGGGAGCATAGCCTACATGAATGCCCCCTTGTTGAAGCTAAAGACAAGCTACTCAATACCNGCGAGAGGCAGAGAAGNGNAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGNCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTNGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGNAATGTATGNCTATGTATTATCATCAGCCTGCGCCAAGANCAAGANNATCATANTTAAATGTAACTAGTATACATTNACTCAATGTTCGGATTTANTGTGACATACCGNAGATNTGCTGNGGAATGTGGATGACACNCTCTNGTTTATGANGCAATGCACGCAACNCTAGCCTTANCTAACTTAAGCTATGCNTTTGTTCNTGTCAACNAAGCATATAACNNGGCGCATAATGCATTCTTTTCCCGCACANAANTTCCANACACN]

[+] EMBL CA764882             [GGANTCGCNAGCTTGCTTGGCCGGGACNTGACAGGGGGGAGCATAGCCTACATGAATGCCCCCTTGTTGAAGCTAAAGACAAGCTACTCAATACCNGCGAGAGGCAGAGAAGNGNAACGCAGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGNCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTNGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGNAATGTATGNCTATGTATTATCATCAGCCTGCGCCAAGANCAAGANNATCATANTTAAATGTAACTAGTATACATTNACTCAATGTTCGGATTTANTGTGACATACCGNAGATNTGCTGNGGAATGTGGATGACACNCTCTNGTTTATGANGCAATGCACGCAACNCTAGCCTTANCTAACTTAAGCTATGCNTTTGTTCNTGTCAACNAAGCATATAACNNGGCGCATAATGCATTCTTTTCCCGCACANAANTTCCANACACN]




>consensus_8507#1
GGANTCGCNAGCTTGCTTGGCCGGGACNTGACAGGGGGGAGCATAGCCTACATGAATGCC
CCCTTGTTGAAGCTAAAGACAAGCTACTCAATACCNGCGAGAGGCAGAGAAGNGNAACGC
AGCCACAGAGACTTGCGAGGAAGCTAGGGAGCGGNCTGAAGCGGCAATTTCGAAGGAAAA
GAAACTCACAGCATTATGGGAGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACC
TAGAGTCACAACCATTNGATAGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGT
AAAATTATTTTTGGTAGCTGCTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTG
TACGGCTCCACTTGNAATGTATGNCTATGTATTATCATCAGCCTGCGCCAAGANCAAGAN
NATCATANTTAAATGTAACTAGTATACATTNACTCAATGTTCGGATTTANTGTGACATAC
CGNAGATNTGCTGNGGAATGTGGATGACACNCTCTNGTTTATGANGCAATGCACGCAACN
CTAGCCTTANCTAACTTAAGCTATGCNTTTGTTCNTGTCAACNAAGCATATAACNNGGCG
CATAATGCATTCTTTTCCCGCACANAANTTCCANACACN

consensusID : consensus_8507#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [ACGAGACGAAACGGTAAAGAATCCGGCAGCAGCAAGCAGGAGAGCGCGACTCGNCGTCCCCGCTCCGCTCCACACGCATTGCCCGCTCGCCCGCCCGCCCGCCCGTAAGCGCGACGGNCTGGAGCNATNGGGCGGCGCGGGGGCGCGGCGGTNGCGGCGGCGTNCGGGCGGTNGTGCCTNGTGATCCTNGCCGTGGCCTCCGCGCTCGGCGTNTCCGGGCCGGCCTTCTANTTGCGCTACAAGAAGGGCTTCGCTNCTTCTTCTTCTTCTTC]

[+] EMBL OSS1806A             [ACGAGACGAAACGGTAAAGAATCCGGCAGCAGCAAGCAGGAGAGCGCGACTCGNCGTCCCCGCTCCGCTCCACACGCATTGCCCGCTCGCCCGCCCGCCCGCCCGTAAGCGCGACGGNCTGGAGCNATNGGGCGGCGCGGGGGCGCGGCGGTNGCGGCGGCGTNCGGGCGGTNGTGCCTNGTGATCCTNGCCGTGGCCTCCGCGCTCGGCGTNTCCGGGCCGGCCTTCTANTTGCGCTACAAGAAGGGCTTCGCTNCTTCTTCTTCTTCTTC]




>consensus_8507#2
ACGAGACGAAACGGTAAAGAATCCGGCAGCAGCAAGCAGGAGAGCGCGACTCGNCGTCCC
CGCTCCGCTCCACACGCATTGCCCGCTCGCCCGCCCGCCCGCCCGTAAGCGCGACGGNCT
GGAGCNATNGGGCGGCGCGGGGGCGCGGCGGTNGCGGCGGCGTNCGGGCGGTNGTGCCTN
GTGATCCTNGCCGTGGCCTCCGCGCTCGGCGTNTCCGGGCCGGCCTTCTANTTGCGCTAC
AAGAAGGGCTTCGCTNCTTCTTCTTCTTCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8507#0      GTGATCCTGGCCGTGGCCTCCGCGCTCGGCGTCTCCGGGCCGGCCTTCTACTGGCGCTAC 60
consensus_8507#1      ------------------------------------------------------------
consensus_8507#2      ------------------------------------------------------------
                                                                                  

consensus_8507#0      AAGAAGGGCTTCGCCTCCTCCTCCTCCTCCTCCTCGGTCTCCGCTTCCGCTGCGGCCGTC 120
consensus_8507#1      ------------------------------------------------------------
consensus_8507#2      ------------------------------------------------------------
                                                                                  

consensus_8507#0      GTCTCCCCCTCCTGCCCGCCCTGCAGCTGCGACTGCCCGCCGCCGCTCTCCCTCCAGTCC 180
consensus_8507#1      ------------------------------------------------------------
consensus_8507#2      ------------------------------------------------------------
                                                                                  

consensus_8507#0      ATCGCCCCCGGGCTTGTCAACTTCTCAACTTCAGGTTGTGGCAAAAATGACCCTGAACTT 240
consensus_8507#1      ------------------------------------------------------------
consensus_8507#2      ------------------------------------------------------------
                                                                                  

consensus_8507#0      AGTAAAGAGATGGAGAAGCAGTTTGTTGATCTTCTTAATGAGGAGCTCAAGCTGCAGCAG 300
consensus_8507#1      ----------------------------------GGANTCGCNAGCTTGCTTGGCCGGGA 26
consensus_8507#2      ----------------------------------------ACGAGACGAAACGGTAAAGA 20
                                                                 **        *      

consensus_8507#0      ATT-GTAGCTGAGGAGCATAGCCATCACATGAAT-GCCACCCTTGTTGAAGCTAAAAGAC 358
consensus_8507#1      CNT-GACAGGGGGGAGCATAGCC--TACATGAAT-GCC-CCCTTGTTGAAGCTAAA-GAC 80
consensus_8507#2      ATCCGGCAGCAGCAAGCAGGAGA---GCGCGACTCGNCGTCCCCGCTCCGCTCCACACGC 77
                          *         ****         *  ** * * *  **  * *       *    *

consensus_8507#0      AAGCTACTCAATACCAGCGAGAGGCAGAGAAGTGTAACGCAGCCACAGAGACTTGCGAGG 418
consensus_8507#1      AAGCTACTCAATACCNGCGAGAGGCAGAGAAGNGNAACGCAGCCACAGAGACTTGCGAGG 140
consensus_8507#2      ATTGCCCGCTCGCCCGCCCGCCCGCCCGTAAGCGCGACG--GNC-TGGAGCNATNGGGCG 134
                      *     * *    **  *     **    *** *  ***  * *   ***   *  *  *

consensus_8507#0      AAGCTAGGGAGCGGTTTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGG 478
consensus_8507#1      AAGCTAGGGAGCGGNCTGAAGCGGCAATTTCGAAGGAAAAGAAACTCACAGCATTATGGG 200
consensus_8507#2      GCGCGGGGGCGCGGCG-GTNGCGGCGGCGTNCGGGCGGTNGTGCCTNGTGATCCTN---- 189
                        **  *** ****   *  *****    *    *     *   **        *     

consensus_8507#0      AGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTTGAT 538
consensus_8507#1      AGCAAAGAGCTCGCCAATTGGGTTGGCAGGACTCTAGACCTAGAGTCACAACCATTNGAT 260
consensus_8507#2      -GCCGTGGCCTCCGCGCTCGGCGTNTCCGGGCC--GGCCTTCTANTTGCG-CTACAAGAA 245
                       **   *  ***  *  * **  *  * ** *    * * *  * *  *  * *   ** 

consensus_8507#0      AGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTG 598
consensus_8507#1      AGCTTGACATGTCGTTGTATTTCCTTTTTCTTCTACAGGTAAAATTATTTTTGGTAGCTG 320
consensus_8507#2      GGGCT------TCGCTNCTTCTTCTTCTTCTTC--------------------------- 272
                       *  *      *** *   * * *** ******                           

consensus_8507#0      CTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGTAATGT 658
consensus_8507#1      CTGGATTGCATCCTGCAGCCAAACCGAGCAGTGTTAATTGTACGGCTCCACTTGNAATGT 380
consensus_8507#2      ------------------------------------------------------------
                                                                                  

consensus_8507#0      ATGTCTATGTATTATCATCAGC-TGTGCCAAGAGCAAGAATATCATAGTTAAATGTAACT 717
consensus_8507#1      ATGNCTATGTATTATCATCAGCCTGCGCCAAGANCAAGANNATCATANTTAAATGTAACT 440
consensus_8507#2      ------------------------------------------------------------
                                                                                  

consensus_8507#0      AGTATACATTTACTCAATGTTCGGATTTATTGTGACATACCGGAGATATGCTGTGGAATG 777
consensus_8507#1      AGTATACATTNACTCAATGTTCGGATTTANTGTGACATACCGNAGATNTGCTGNGGAATG 500
consensus_8507#2      ------------------------------------------------------------
                                                                                  

consensus_8507#0      TGGATGACACACT-TTGTTTATGATGCAAAAAA--------------------------- 809
consensus_8507#1      TGGATGACACNCTCTNGTTTATGANGCAATGCACGCAACNCTAGCCTTANCTAACTTAAG 560
consensus_8507#2      ------------------------------------------------------------
                                                                                  

consensus_8507#0      ------------------------------------------------------------
consensus_8507#1      CTATGCNTTTGTTCNTGTCAACNAAGCATATAACNNGGCGCATAATGCATTCTTTTCCCG 620
consensus_8507#2      ------------------------------------------------------------
                                                                                  

consensus_8507#0      -------------------
consensus_8507#1      CACANAANTTCCANACACN 639
consensus_8507#2      -------------------