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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8511#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1667 fasta sequence
[CAGCAACTCATCTGTCGAGGGAGTGGTGCTGTGGTGGTGGTGGTCATGGACTCATTGGGCATGGCCGCCTCGTCCGAGCCAAAGGCATGTGAAGCGCTCGGAGTCAGAGAGACCAGGGCTGGGCTGGCGCCTGCTCGCTTCCCGAGAGAACCCCTTGTGAAGATTCGAGCCAACCCCTTCCCCCTTCCTCTTCTCTCTCTTTTTCTCTCGCTTCTCCTCTTCTTTAAAGCATGGACCAGCGCCTAGTAGCATCTCCATCCACGGCAGTAGGCAGCCGGTGCCATGGGAGGGGGGAAGTAGGAGGGTTTTTCTTCTTCTTCTTTCTTCTCTCTCGTTTTCTCGCAGAATCATCTGTGTGCAGATTCCATGCTTTTCGTTAGGGTTAGCCTATTGTGCTAAGCTTGTTTTTTCTTCCATGGCTTCTTGTTCTTATTCGTTTGGTTATGTTGAGCTGTTCTTGTCGTTGCTGGAAAGTGTTGTGGACGTTGAGCTCCTTTCGGTCCAAAAAGGGGTGTTGCTGTGGGTCGATTGAGCTGCTGGGTCATGGATCCCGTTAGCCTACTCCATGTTCATCATTCAGCTCGAGATCTGAAAGAAACTACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGTTGGGATAGGCTTATGGCTTGCATGCCCCAGGAGCTGCATCAACCGTACATGGACCCTCTTTGGATTGAAGGGAGCTCTGCATCTTTTGTCACCCTCGAGCAGCTTTACTGTTCTGGATTTCCATCGTTCTCCTCTTGAGTCTTCTTGACTTAGCGCTTTTTTTTTCTTTTTTTAAAAGAAAAAATAACTTTTTTTTCAGGATTGTGCTCCATGCGTATGAGCATGGTGGTGATGATGTATGTTGCCAGATAGCAGTAGTATTAATATTGTTGCAGGTGTGGTGGAGGGTACTAGGAATTTAGGTGGTAGCAGTACATACTTGGTCACCAGTATCTAGTGCCCTTTTCCTTGTTGGG-AAAAAGTTGCTTCTATCGCCATGCTTATCCTTCCTCTTTCGGCTCTTCTTTGCACAGCAGCTCTAGATCTTTTGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGATGCTTCAGAACTTAGGAGGCTTTTAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATATATCTTTA-TTAGTTTGTTCTATGGGTAGCCTTTGCGTATTTAAAGCGATTTATCACTTCGCCGATGAATCTAG-TTTGCTGTTCTCTGAAATTGCT-GGAGTTCAATCCTTGTTTGCTCTTGAAGTCTTGATAGTTTGCTTAGTGATGCACTGATGAACCTGTGTATATCCTTTTCAGATGACCACAACCAACTGATTCCTATTGCAGCTAACTCAAGTGTGGAACTAGCTTTACGCTTGAAGCTTTCATTCAGAAAAAAAATAGCCTGCTTAAGTCAATTTGTGCTTTCATGCACATTCTACATACGGAGTAGTTTGTGTTTTGACTGTTGGGGCTTGAAGGTGTTTGTTTTATTTCCTCAATTTTGTGTGTTATTTTTCCACTTTATAGCCATGCCACTTGTCTAATGGATCCTTGTGTAATGTAATCTGTACTTTCCGCTCGGAATAGGGACTTGATGCAATGGCCAAA]
[+] EMBL AK062682 [CAGCAACTCATCTGTCGAGGGAGTGGTGCTGTGGTGGTGGTGGTCATGGACTCATTGGGCATGGCCGCCTCGTCCGAGCCAAAGGCATGTGAAGCGCTCGGAGTCAGAGAGACCAGGGCTGGGCTGGCGCCTGCTCGCTTCCCGAGAGAACCCCTTGTGAAGATTCGAGCCAACCCCTTCCCCCTTCCTCTTCTCTCTCTTTTTCTCTCGCTTCTCCTCTTCTTTAAAGCATGGACCAGCGCCTAGTAGCATCTCCATCCACGGCAGTAGGCAGCCGGTGCCATGGGAGGGGGGAAGTAGGAGGGTTTTTCTTCTTCTTCTTTCTTCTCTCTCGTTTTCTCGCAGAATCATCTGTGTGCAGATTCCATGCTTTTCGTTAGGGTTAGCCTATTGTGCTAAGCTTGTTTTTTCTTCCATGGCTTCTTGTTCTTATTCGTTTGGTTATGTTGAGCTGTTCTTGTCGTTGCTGGAAAGTGTTGTGGACGTTGAGCTC ]
[+] EMBL AK100209 [ GGACTCATTGGGCATGGCCGCCTCGTCCGAGCCAAAGGCATGTGAAGCGCTCGGAGTCAGAGAGACCAGGGCTGGGCTGGCGTCTGCTCGCTTCCCGAGAGAACCCCTTGTGAAGATTCGAGCCAACCCCTTCCCCCTTCCTCTTCTCTCTCTTTTTCTCTCGCTTCTCCTCTTCTTTAAAGCATGGACCAGCGCCTAGTAGCATCTCCATCCACGGCAGTAGGCAGCCGGTGCCATGGGAGGGGGGAAGTAGGAGGGTTTTTCTTCTTCTTCTTTCTTCTCTCTCGTTTTCTCGCAGAATCATCTGTGTGCAGATTCCATGCTTTTCGTTAGGGTTAGCCTATTGTGCTAAGCTTGTTTTTTCTTCCATGGCTTCTTGTTCTTATTCGTTTGGTTATGTTGAGCTGTTCTTGTCGTTGCTGGAAAGTGTTGTGGACGTTGAGCTCCTTTCGGTCCAAAAAGGGGTGTTGCTGTGGGTCGATTGAGCTGCTGGGTCATGGATCCCGTTAGCCTACTCCATGTTCATCATTCAGCTCGAGATCTGAAAGAAACTACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGTTGGGATAGGCTTATGGCTTGCATGCCCCAGGAGCTGCATCAACCGTACATGGACCCTCTTTGGATTGAAGGGAGCTCTGCATCTTTTGTCACCCTCGAGCAGCTTTACTGTTCTGGATTTCCATCGTTCTCCTCTTGAGTCTTCTTGACTTAGCGCTTTTTTTTTCTTTTTTTAAAAGAAAAAATAACTTTTTTTTCAGGATTGTGCTCCATGCGTATGAGCATGGTGGTGATGATGTATGTTGCCAGATAGCAGTAGTATTAATATTGTTGCAGGTGTGGTGGAGGGTACTAGGAATTTAGGTGGTAGCAGTACATACTTGGTCACCAGTATCTAGTGCCCTTTTCCTTGTTGGG AAAAAGTTGCTTCTATCGCCATGCTTATCCTTCCTCTTTCGGCTCTTCTTTGCACAGCAGCTCTAGATCTTTTGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGATGCTTCAGAACTTAGGAGGCTTTTAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATATATCTTTA TTAGTTTGTTCTATGGGTAGCCTTTGCGTATTTAAAGCGATTTATCACTTCGCCGATGAATCTAG TTTGCTGTTCTCTGAAATTGCT GGAGTTCAATCCTTGTTTGCTCTTGAAGTCTTGATAGTTTGCTTAGTGATGCACTGATGAACCTGTGTATATCCTTTTCAGATGACCACAACCAACTGATTCCTATTGCAGCTAACTCAAGTGTGGAACTAGCTTTACGCTTGAAGCTTTCATTCAGAAAAAAAATAGCCTGCTTAAGTCAATTTGTGCTTTCATGCACATTCTACATACGGAGTAGTTTGTGTTTTGACTGTTGGGGCTTGAAGGTGTTTGTTTTATTTCCTCAATTTTGTGTGTTATTTTTCCACTTTATAGCCATGCCACTTGTCTAATGGATCCTTGTGTAATGTAATCTGTACTTTCCGCTCGGAATAGGGACTTGATGCAATGGCCAAA]
[+] EMBL CF303003 [ GCAGATTCCATGCTTTTCGTTAGGGTTAGCCTATTGTGCTAAGCTTGTTTTTTCTTCCATGGCTTCTTGTTCTTATTCGTTTGGTTATGTTGAGCTGTTCTTGTCGTTGCTGGAAAGTGTTGTGGACGTTGAGCTCCTTTCGGTCCAAAAAGGGGTGTTGCTGTGGGTCGATTGAGCTGCTGGGTCATGGATCCCGTTAGCCTACTCCATGTTCATCATTCAGCTCGAGATCTGAAAGAAACTACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGTTGGGATAGGCTTATGGCTTGCATGCCCCAGGAGCTGCATCAACCCTACATGGACCCTCTTTGGATTGAAGGGAGCTCTGCATCTTTTGTCACCCTCGAGCAGCTNTACTGTTCTGGATTTCCATCGTTCTCCTCTTGAGTC ]
[+] EMBL CF308674 [ CCCTCTTTGGATTGAAGGGAGCTCTGCATCTTTTGTCACCCTCGAGCAGCTTTACTGTTCTGGATTTCCATCGTTCTCCTCTTGAGTCTTCTTGACTTAGCGCTTTTTTTTTCTTTTTTTAAAAGAAAAAATAACTTTTTTTTCAGGATTGTGCTCCATGCGTATGAGCATGGTGGTGATGATGTATGTTGCCAGATAGCAGTAGTATTAATATTGTTGCAGGTGTGGTGGAGGGTACTAGGAATTTAGGTGGTAGCAGTACATACTTGGTCACCAGTATCTAGTGCCCTTTTCCTTGTTGGGAAAAAAGTTGCTTCTATCGCCATGCTTATCCTTCCTCTTTCGGCTCTTCTTTGCACAGCAGCTCTAGATCTTTTGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGATGCTTCAGAACTTAGGAGGCTTTTAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATATATCTTTATTTAGTTTGTTCTATGGGTAGCCTTTGCGTATTTAAAGCGATTTATCACTTCGCCGATGAATCTAGTTTTGCTGTTCTCTGAAATTGCTGGGAGTTC ]
consensusID : consensus_8511#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence
[TCCTTCCCTTCGCNTTGGATCNAGGNACTCNTNAATCTTNGTGGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGGATGCTTCAGAAACTTAGGANGCTTTCAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATATATCTTTATCAGTTTGTTCTATGGGTNGCCTTTGCGTTNTTTAAAGCGATTTATCACTTCTCCGATGAAATCTAGTTTGCTGTTCCTCTGAAAATANCTGGGAGTTCAAAACCTTGTTTTGCTCTTGAAAGTCTTGAATAAGTTTGCTTAAGTGATGCACTGAATGAAACCTGTGTTATGTCCTTTTCAGAAGACCACAACCAACTGAATTCCTATTGCAAGCTAAAGTTGTTGGGAAACTAAGCTTTACGCTTGAAAGC]
[+] EMBL AA754622 [TCCTTCCCTTCGCNTTGGATCNAGGNACTCNTNAATCTTNGTGGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGGATGCTTCAGAAACTTAGGANGCTTTCAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATATATCTTTATCAGTTTGTTCTATGGGTNGCCTTTGCGTTNTTTAAAGCGATTTATCACTTCTCCGATGAAATCTAGTTTGCTGTTCCTCTGAAAATANCTGGGAGTTCAAAACCTTGTTTTGCTCTTGAAAGTCTTGAATAAGTTTGCTTAAGTGATGCACTGAATGAAACCTGTGTTATGTCCTTTTCAGAAGACCACAACCAACTGAATTCCTATTGCAAGCTAAAGTTGTTGGGAAACTAAGCTTTACGCTTGAAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8511#0 CAGCAACTCATCTGTCGAGGGAGTGGTGCTGTGGTGGTGGTGGTCATGGACTCATTGGGC 60
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 ATGGCCGCCTCGTCCGAGCCAAAGGCATGTGAAGCGCTCGGAGTCAGAGAGACCAGGGCT 120
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 GGGCTGGCGCCTGCTCGCTTCCCGAGAGAACCCCTTGTGAAGATTCGAGCCAACCCCTTC 180
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 CCCCTTCCTCTTCTCTCTCTTTTTCTCTCGCTTCTCCTCTTCTTTAAAGCATGGACCAGC 240
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 GCCTAGTAGCATCTCCATCCACGGCAGTAGGCAGCCGGTGCCATGGGAGGGGGGAAGTAG 300
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 GAGGGTTTTTCTTCTTCTTCTTTCTTCTCTCTCGTTTTCTCGCAGAATCATCTGTGTGCA 360
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 GATTCCATGCTTTTCGTTAGGGTTAGCCTATTGTGCTAAGCTTGTTTTTTCTTCCATGGC 420
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 TTCTTGTTCTTATTCGTTTGGTTATGTTGAGCTGTTCTTGTCGTTGCTGGAAAGTGTTGT 480
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 GGACGTTGAGCTCCTTTCGGTCCAAAAAGGGGTGTTGCTGTGGGTCGATTGAGCTGCTGG 540
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 GTCATGGATCCCGTTAGCCTACTCCATGTTCATCATTCAGCTCGAGATCTGAAAGAAACT 600
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 ACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGTTG 660
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 GGATAGGCTTATGGCTTGCATGCCCCAGGAGCTGCATCAACCGTACATGGACCCTCTTTG 720
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 GATTGAAGGGAGCTCTGCATCTTTTGTCACCCTCGAGCAGCTTTACTGTTCTGGATTTCC 780
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 ATCGTTCTCCTCTTGAGTCTTCTTGACTTAGCGCTTTTTTTTTCTTTTTTTAAAAGAAAA 840
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 AATAACTTTTTTTTCAGGATTGTGCTCCATGCGTATGAGCATGGTGGTGATGATGTATGT 900
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 TGCCAGATAGCAGTAGTATTAATATTGTTGCAGGTGTGGTGGAGGGTACTAGGAATTTAG 960
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 GTGGTAGCAGTACATACTTGGTCACCAGTATCTAGTGCCCTTTTCCTTGTTGGGAAAAAG 1020
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 TTGCTTCTATCGCCATGCTTATCCTTCCTCTTTCGGCTCTTCTTTGCACAGCAGCTCTAG 1080
consensus_8511#1 ------------------------TCCTTCCCTTCGCNTTGGATCNAGGNACTCNTNAAT 36
* * ** * ** * * * * *
consensus_8511#0 ATCTTTTGGTTTCCTGCTCTACTGGAATCTGATAATGCTGG-ATGCTTCAGAA-CTTAGG 1138
consensus_8511#1 CTTNGTGGGTTTCCTGCTCTACTGGAATCTGATAATGCTGGGATGCTTCAGAAACTTAGG 96
* * ********************************** *********** ******
consensus_8511#0 AGGCTTTTAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATAT 1198
consensus_8511#1 ANGCTTTCAGGGCTGAAACGTTCAACCTAGTTCTCCCTATTTCATCATCTGCAAGTATAT 156
* ***** ****************************************************
consensus_8511#0 ATCTTTATTAGTTTGTTCTATGGGTAGCCTTTGCGT-ATTTAAAGCGATTTATCACTTCG 1257
consensus_8511#1 ATCTTTATCAGTTTGTTCTATGGGTNGCCTTTGCGTTNTTTAAAGCGATTTATCACTTCT 216
******** **************** ********** *********************
consensus_8511#0 CCGATGAA-TCTAGTTTGCTGTTC-TCTGAAATTGCT--GGAGTTCAAT-CCTTGTTT-G 1311
consensus_8511#1 CCGATGAAATCTAGTTTGCTGTTCCTCTGAAAATANCTGGGAGTTCAAAACCTTGTTTTG 276
******** *************** ******* * ********* ******** *
consensus_8511#0 CTCTTGAA-GTCTTGAT--AGTTTGCTTA-GTGATGCACTGAT--GAACCTGTGT-ATAT 1364
consensus_8511#1 CTCTTGAAAGTCTTGAATAAGTTTGCTTAAGTGATGCACTGAATGAAACCTGTGTTATGT 336
******** ******* ********** ************ ********* ** *
consensus_8511#0 CCTTTTCAGATGACCACAACCAACTGA-TTCCTATTGCA-GCTAACTCAAGTGTGGAACT 1422
consensus_8511#1 CCTTTTCAGAAGACCACAACCAACTGAATTCCTATTGCAAGCTAAAGTTGTTGGGAAACT 396
********** **************** *********** ***** ** * ****
consensus_8511#0 A-GCTTTACGCTTGAAGCTTTCATTCAGAAAAAAAATAGCCTGCTTAAGTCAATTTGTGC 1481
consensus_8511#1 AAGCTTTACGCTTGAAAGC----------------------------------------- 415
* **************
consensus_8511#0 TTTCATGCACATTCTACATACGGAGTAGTTTGTGTTTTGACTGTTGGGGCTTGAAGGTGT 1541
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 TTGTTTTATTTCCTCAATTTTGTGTGTTATTTTTCCACTTTATAGCCATGCCACTTGTCT 1601
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 AATGGATCCTTGTGTAATGTAATCTGTACTTTCCGCTCGGAATAGGGACTTGATGCAATG 1661
consensus_8511#1 ------------------------------------------------------------
consensus_8511#0 GCCAAA 1667
consensus_8511#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||