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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8512#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1505 fasta sequence
[ACGGAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCCGAATCCGGCTCCGAAGCAGGGGGCGGAGGGGAATGGCCCGAAGGTCTCGTCGCCCAAGAGGCAGGCCTTCCACCGCATCTGGTCGACCGAGGACGAGGTGCGCATCCTCGAGGCGCTCGCGGCGCACCGCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCCTCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCCGTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGCTCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCACCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGGAGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCGATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTTCGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGGTCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATGGCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGCAAAATTTTGCTTCTTAGTGATGGAGTTGGATGTTCTATGTTCTTGTCTAGGCAATTCAGTCAGCGTCTCTTCTCAGTTCAGATAGATCGATAGGATGTAGTATAAAACATTGAAATTTCGTTTTTGGTTTGTCTTATCATTCCAGACAGTGATAGAATGTAGCAAGACTGAAATCGGTCATCGAATCAGTCCTGAACTCTTGACTCCTTTATAAACTGAACCCCAGTCCTCGTTAAGTATGGGTTAGTGCTGGCAGTGTGTTGCCCTAGCCTGAGGTCTCTGATATGGCAACTTGTCGCGTGATCAGTGATCGTCTCTGTCTAGCTGACATCTCTCCTGGATGAAATCAATCCAAAAAAAAAGAA]
[+] EMBL BP184833 [ACGGAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCC ]
[+] EMBL AU166767 [ GAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGC ]
[+] EMBL AK066823 [ AGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCCAAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGGTTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGGAGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATTCTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTACCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAGAGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCCGAATCCGGCTCCGAAGCAGGGGGCGGAGGGGAATGGCCCGAAGGTCTCGTCGCCCAAGAGGCAGGCCTTCCACCGCATCTGGTCGACCGAGGACGAGGTGCGCATCCTCGAGGCGCTCGCGGCGCACCGCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCCTCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCCGTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGCTCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCACCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGGAGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCGATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTTCGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGGTCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATGGCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGCAAAATTTTGCTTCTTAGTGATGGAGTTGGATGT ]
[+] EMBL AK071059 [ GCGCACCGCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCCTCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCCGTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGCTCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCACCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGGAGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCGATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTTCGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGGTCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATGGCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGCAAAATTTTGCTTCTTAGTGATGGAGTTGGATGTTCTATGTTCTTGTCTAGGCAATTCAGTCAGCGTCTCTTCTCAGTTCAGATAGATCGATAGGATGTAGTATAAAACATTGAAATTTCGTTTTTGGTTTGTCTTATCATTCCAGACAGTGATAGAATGTAGCAAGACTGAAATCGGTCATCGAATCAGTCCTGAACTCTTGACTCCTTTATAAACTGAACCCCAGTCCTCGTTAAGTATGGGTTAGTGCTGGCAGTGTGTTGCCCTAGCCTGAGGTCTCTGATATGGCAACTTGTCGCGTGATCAGTGATCGTCTCTGTCTAGCTGACATCTCTCCTGGATGAAATCAATCCAAAAAAAAAGAA]
consensusID : consensus_8512#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence
[GTGCTGCNCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCNCTNAGCTGGTCGAGTGACTAGGTGAGCTGAACTNAAGTGAACAGTAGTAGCTCGGNGTTCCTTACCATGGCATAAAAAAGTGTACCTGGTCATTACCTGCAAACTATATNGTGAACAGGCATTACCTGCAAAATTTTGCTTTTTAGTGATGGAGTTGGATGTTNTATGTTCTTGTNTAGGCAATTCAGTCAGNGTNTNTTTTCAGTTCAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU166768 [GTGCTGCNCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCNCTNAGCTGGTCGAGTGACTAGGTGAGCTGAACTNAAGTGAACAGTAGTAGCTCGGNGTTCCTTACCATGGCATAAAAAAGTGTACCTGGTCATTACCTGCAAACTATATNGTGAACAGGCATTACCTGCAAAATTTTGCTTTTTAGTGATGGAGTTGGATGTTNTATGTTCTTGTNTAGGCAATTCAGTCAGNGTNTNTTTTCAGTTCAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8512#0 ACGGAGAAGTCCCGAGACCGGCGCCGCCAGGACCGCCACCCACCTCTGCCTCCGCCCTCC 60
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 AAACCCTAGCTCCGGCGATGGCCCCGAAGCGCCCCACTCCGCCGCCGCCGCCGCCTCCGG 120
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 TTGCCTCCTCAGAGGAAACCGCCTCCGGCTCGGACTCGGACGAGTCGGAGGAGGAGGAGG 180
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 AGGAGAGTCCCCTTGCTCAGCCCGCACCCGTGGTCTCTAACAAGGGCGCGGAGTCCGATT 240
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 CTTCCGGGGAGGAGGAATCGGAGGAGGAGGAGGAGGAGGACTTGGTGCGCTCCTCCGCTA 300
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 CCAAGAGCAGGGATCCACCGCAGGAGAATCGCGAGGAGGATGATTCGTCCGATGAGGAAG 360
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 AGGACGAGTCGTCCGAATCCGAGAAGGCGGAGGCGCCGCCGCCGCCGCCGCCGAATCCGG 420
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 CTCCGAAGCAGGGGGCGGAGGGGAATGGCCCGAAGGTCTCGTCGCCCAAGAGGCAGGCCT 480
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 TCCACCGCATCTGGTCGACCGAGGACGAGGTGCGCATCCTCGAGGCGCTCGCGGCGCACC 540
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 GCCGGGAGCACGGGTCGCTGCCACAGACCGACGCGCTCATCGCCACCCTCGCCGGCAGCC 600
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 TCGACAACACTGGCTACGGCCGCAAGGAGCTCCAGGGGAAGGTCAGCACTCTCAAGCGCC 660
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 GTTACGAATCCACCGCTAAGAAGAAGGGCGATCTCCCAAGCAAGGGCCATGACCGCCGGC 720
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 TCTATGACCTCTCCAAGAGCGTCTGGGGCAGCGAGGCGGCAGCGGCGGCGGTGAACGGCA 780
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 CCACCACCGCGCCGAGGGAGTTCGGCGAGATGTGCGAGCTGTACCCGCACCTCGCTGAGG 840
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 AGGTCAAGTTGCTGGAGGCGGCACACCCTGGCTTGTTCAAGAGGGACTTCGGGAAGCTCG 900
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 ATGACGACAAGGCGCATGCGCTGGACATGAAGATCAAGAAGCAGAGGATTGCCGAGATTT 960
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 CGGTGGTGCTGCGCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCGCTGAGCTGG 1020
consensus_8512#1 -----GTGCTGCNCCGTGGCGACCTGACCAAGGAGGTGACCAAGGTGCTCNCTNAGCTGG 55
******* ************************************* ** ******
consensus_8512#0 TCGAGTGACTAGGTGAGCTGAACTGAAGTGAACAGTAGTAGCTCGGCGTTCCTTACCATG 1080
consensus_8512#1 TCGAGTGACTAGGTGAGCTGAACTNAAGTGAACAGTAGTAGCTCGGNGTTCCTTACCATG 115
************************ ********************* *************
consensus_8512#0 GCATAAGAAAGTGTACCTGGTCATTACCTGCAAACTATATCGTGAACAGGCATTACCTGC 1140
consensus_8512#1 GCATAAAAAAGTGTACCTGGTCATTACCTGCAAACTATATNGTGAACAGGCATTACCTGC 175
****** ********************************* *******************
consensus_8512#0 AAAATTTTGCTTCTTAGTGATGGAGTTGGATGTTCTATGTTCTTGTCTAGGCAATTCAGT 1200
consensus_8512#1 AAAATTTTGCTTTTTAGTGATGGAGTTGGATGTTNTATGTTCTTGTNTAGGCAATTCAGT 235
************ ********************* *********** *************
consensus_8512#0 CAGCGTCTCTTCTCAGTTCAGATAGATCGATAGGATGTAGTATAAAACATTGAAATTTCG 1260
consensus_8512#1 CAGNGTNTNTTTTCAGTTCAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------- 288
*** ** * ** ************ * * * * * * **** * *
consensus_8512#0 TTTTTGGTTTGTCTTATCATTCCAGACAGTGATAGAATGTAGCAAGACTGAAATCGGTCA 1320
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 TCGAATCAGTCCTGAACTCTTGACTCCTTTATAAACTGAACCCCAGTCCTCGTTAAGTAT 1380
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 GGGTTAGTGCTGGCAGTGTGTTGCCCTAGCCTGAGGTCTCTGATATGGCAACTTGTCGCG 1440
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 TGATCAGTGATCGTCTCTGTCTAGCTGACATCTCTCCTGGATGAAATCAATCCAAAAAAA 1500
consensus_8512#1 ------------------------------------------------------------
consensus_8512#0 AAGAA 1505
consensus_8512#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||