cluster # 8518

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Oryza sativa
cluster # 8518 cluster # 8518 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8518#0 length = 993 sequences # 3

consensus_8518#1 length = 360 sequences # 1
consensus_8518#2 length = 337 sequences # 1

consensusID : consensus_8518#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 993
fasta sequence

                              [TCTTTTTTTTTAGTACCAAATCTAATTACCACCAATGCGGTCTTGGGATTAGAATTGCTAAAATCTCATTACATGATGATATGAATTGTACACTACTAGTTAACTACAATGGACTAAACTATCTCAATGGAATTCCACTAAAGTACACTATACATGAACAAAATACATCACGATGAGGGTGAGCTAATGCCATTAATTTCATTGAACAGCTCTGAACAGCTCCTTCCATTTCTCTGGGTCGCTCCCAGGTCCTTCGCCCTTCACCGAGTTGATCTCGTATATTTGTCCTTCTGTGAATTCAATATCCAAAGCTTGGATACAGGCTTCTGCCACCACCAGTCTGCTTGCTTCTCCCACAAGCTTGTCACCTTCGCCCATGACAACTGCCCGTCTTTCTCCAGCAGTAGCTTGAAGAAGTGTGTTAAGGTCATAAGAAGTGTAGGGTCCATCGGTTAATCTCCCAGGCCTTATGATGGTGAAAGGTATGCCTGAGTTCTGGACAAAGTCCTCTGCCATCTTCTTGTACTTAAGCACACCAAACAGATTCATGATACTCCATGGTAGTTCATTGTATTTTGTAACGCCGATGGATGACACCAGAACCAGTCTCTTGATTGTCCGTGGCATGGCGCTCACCAGATTACGGGTGCCATCCCAATCAACACGTTCAGGAGTGTTATCCCCATCCCAGCGCTTTGAAGGGAATGCTGTAGTTCCAGTAGTGCAGATGACATGCGTAACTCCCTCAAATATTTCTGGATCCAATTCTGCAGCATTTCTCGTGTCAGCCTTGTAAGCCTGAAATACGCTCTCATCTTGCTCGCCGAATAGGGTCACTGCCTTTGCAGGATCTCTTAGCAACAACCTTGTCTTGATGTTCCTGCTCAGTAAAGATGCCACCACCAACTGCCCTACGCCGCCGGTCCCGCCGACGACGAGAACTAGCTTGGACGAGGCGTCGGCCGCCGCCTCCGCGCCGGCCTCACCCGACCC]

[+] EMBL CB624404             [TCTTTTTTTTTAGTACCAAATCTAATTACCACCAATGCGGTCTTGGGATTAGAATTGCTAAAATCTCATTACATGATGATATGAATTGTACACTACTAGTTAACTACAATGGACTAAACTATCTCAATGGAATTCCACTAAAGTACACTATACATGAACAAAATACATCACGATGAGGGTGAGCTAATGCCATTAATTTCATTGAACAGCTCTGAACAGCTCCTTCCATTTCTCTGGGTCGCTCCCAGGTCCTTCGCCCTTCACCGAGTTGATCTCGTATATTTGTCCTTCTGTGAATTCAATATCCAAAGCTTGGATACAGGCTTCTGCCACCACCAGTCTGCTTGCTTCTCCCACAAGCTTGTCACCTTCGCCCATGACAACTGCCCGTCTTTCTCCAGCAGTAGCTTGAAGAAGTGTGTTAAGGTCATAAGAAGTGTAGGGTCCATCGGTTAATCTCCCAGGCCTTATGATGGTGAAAGGTATGCCTGAGTTCTGGACAAAGTCCTCTGCCATCTTCTTGTACTTAAGCACACCAAACAGATTCATGATACTCCATGGTAGTTCATTGTATTTTGTAACGCCGATGGATGACACCAGAACCAGTCTCTTGATTGTCCGTGGCATGGCGCTCACCAGATTACGGGTGCCATCCCAATCAACACGTTCAGGAGTGTTATCCCCATCCCAGCGCTTTGAAGGGAATGCTGTAGTTCCAGTAGTGCAGATGACATGCGTAACTCCCTCAAATATTTCTGGATCCAATTCTGCAGCATTTCTCGTGTCAGCCTTGTAAGCCTGAAAT                                                                                                                                                                                            ]
[+] EMBL CB625316             [            GTACCAAATCTAATTACCACCAATGCGGTCTTGGGATTAGAATTGCTAAAATCTCATTACATGATGATATGAATTGTACACTACTAGTTAACTACAATGGACTAAACTATCTCAATGGAATTCCACTAAAGTACACTATACATGAACAAAATACATCACGATGAGGGTGAGCTAATGCCATTAATTTCATTGAACAGCTCTGAACAGCTCCTTCCATTTCTCTGGGTCGCTCCCAGGTCCTTCGCCCTTCACCGAGTTGATCTCGTATATTTGTCCTTCTGTGAATTCAATATCCAAAGCTTGGATACAGGCTTCTGCCACCACCAGTCTGCTTGCTTCTCCCACAAGCTTGTCACCTTCGCCCATGACAACTGCCCGTCTTTCTCCAGCAGTAGCTTGAAGAAGTGTGTTAAGGTCATAAGAAGTGTAGGGTCCATCGGTTAATCTCCCAGGCCTTATGATGGTGAAAGGTATGCCTGAGTTCTGGACAAAGTCCTCTGCCATCTTCTTGTACTTAAGCACACCAAACAGATTCATGATACTCCATGGTAGTTCATTGTATTTTGTAACGCCGATGGATGACACCAGAACCAGTCTCTTGATTGTCCGTGGCATGGCGCTCACCAGATTACGGGTGCCATCCCAATCAACACGTTCAGGAGTGTTATCCCCATCCCAGCGCTTTGAAGGGAATGCTGTAGTTCCAGTAGTGCAGATGACATGCGTAACTCCCTCAAATATTTCTGGATCCAATTCTGCAGCATTTCTCGTGTCAGCCTTGTAAGCCTGAAATACGC                                                                                                                                                                                        ]
[-] EMBL CB624403             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATGGTGAAAGGTATGCCTGAGTTCTGGACAAAGTCCTCTGCCATCTTCTTGTACTTAAGCACACCAAACAGATTCATGATACTCCATGGTAGTTCATTGTATTTTGTAACGCCGATGGATGACACCAGAACCAGTCTCTTGATTGTCCGTGGCATGGCGCTCACCAGATTACGGGTGCCATCCCAATCAACACGTTCAGGAGTGTTATCCCCATCCCAGCGCTTTGAAGGGAATGCTGTAGTTCCAGTAGTGCAGATGACATGCGTAACTCCCTCAAATATTTCTGGATCCAATTCTGCAGCATTTCTCGTGTCAGCCTTGTAAGCCTGAAATACGCTCTCATCTTGCTCGCCGAATAGGGTCACTGCCTTTGCAGGATCTCTTAGCAACAACCTTGTCTTGATGTTCCTGCTCAGTAAAGATGCCACCACCAACTGCCCTACGCCGCCGGTCCCGCCGACGACGAGAACTAGCTTGGACGAGGCGTCGGCCGCCGCCTCCGCGCCGGCCTCACCCGACCC]




>consensus_8518#0
TCTTTTTTTTTAGTACCAAATCTAATTACCACCAATGCGGTCTTGGGATTAGAATTGCTA
AAATCTCATTACATGATGATATGAATTGTACACTACTAGTTAACTACAATGGACTAAACT
ATCTCAATGGAATTCCACTAAAGTACACTATACATGAACAAAATACATCACGATGAGGGT
GAGCTAATGCCATTAATTTCATTGAACAGCTCTGAACAGCTCCTTCCATTTCTCTGGGTC
GCTCCCAGGTCCTTCGCCCTTCACCGAGTTGATCTCGTATATTTGTCCTTCTGTGAATTC
AATATCCAAAGCTTGGATACAGGCTTCTGCCACCACCAGTCTGCTTGCTTCTCCCACAAG
CTTGTCACCTTCGCCCATGACAACTGCCCGTCTTTCTCCAGCAGTAGCTTGAAGAAGTGT
GTTAAGGTCATAAGAAGTGTAGGGTCCATCGGTTAATCTCCCAGGCCTTATGATGGTGAA
AGGTATGCCTGAGTTCTGGACAAAGTCCTCTGCCATCTTCTTGTACTTAAGCACACCAAA
CAGATTCATGATACTCCATGGTAGTTCATTGTATTTTGTAACGCCGATGGATGACACCAG
AACCAGTCTCTTGATTGTCCGTGGCATGGCGCTCACCAGATTACGGGTGCCATCCCAATC
AACACGTTCAGGAGTGTTATCCCCATCCCAGCGCTTTGAAGGGAATGCTGTAGTTCCAGT
AGTGCAGATGACATGCGTAACTCCCTCAAATATTTCTGGATCCAATTCTGCAGCATTTCT
CGTGTCAGCCTTGTAAGCCTGAAATACGCTCTCATCTTGCTCGCCGAATAGGGTCACTGC
CTTTGCAGGATCTCTTAGCAACAACCTTGTCTTGATGTTCCTGCTCAGTAAAGATGCCAC
CACCAACTGCCCTACGCCGCCGGTCCCGCCGACGACGAGAACTAGCTTGGACGAGGCGTC
GGCCGCCGCCTCCGCGCCGGCCTCACCCGACCC

consensusID : consensus_8518#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [TTTTTTTTAGTACCAAATCTAATTACCACCAATGCGGTCTTGGGATTAGAATTGCTAAAATCTCATTACATGATGATATGAATTGTACACTACTAGTTAACTACAATGGACTAAACTATCTCAATGGAATTCCACTAAAGTACACTATACATGAACAAAATACATCACGATGAGGGTGAGCTAATGCCATTAATTTCATTGAACAGCTCTGAACAGCTCCTTCCATTTCTCTGGGTCGCTCCCAGGTCCTTCGCCCTTCACCGAGTTGATCTCGTATATTTGTCCTTCTGTGAATTCAATATCCAAAGCTTGGATACAGGCTTTNCCTCSTGCCGAATTCGGCACGANVGVNCGAGCTCG]

[-] EMBL AA754397             [TTTTTTTTAGTACCAAATCTAATTACCACCAATGCGGTCTTGGGATTAGAATTGCTAAAATCTCATTACATGATGATATGAATTGTACACTACTAGTTAACTACAATGGACTAAACTATCTCAATGGAATTCCACTAAAGTACACTATACATGAACAAAATACATCACGATGAGGGTGAGCTAATGCCATTAATTTCATTGAACAGCTCTGAACAGCTCCTTCCATTTCTCTGGGTCGCTCCCAGGTCCTTCGCCCTTCACCGAGTTGATCTCGTATATTTGTCCTTCTGTGAATTCAATATCCAAAGCTTGGATACAGGCTTTNCCTCSTGCCGAATTCGGCACGANVGVNCGAGCTCG]




>consensus_8518#1
TTTTTTTTAGTACCAAATCTAATTACCACCAATGCGGTCTTGGGATTAGAATTGCTAAAA
TCTCATTACATGATGATATGAATTGTACACTACTAGTTAACTACAATGGACTAAACTATC
TCAATGGAATTCCACTAAAGTACACTATACATGAACAAAATACATCACGATGAGGGTGAG
CTAATGCCATTAATTTCATTGAACAGCTCTGAACAGCTCCTTCCATTTCTCTGGGTCGCT
CCCAGGTCCTTCGCCCTTCACCGAGTTGATCTCGTATATTTGTCCTTCTGTGAATTCAAT
ATCCAAAGCTTGGATACAGGCTTTNCCTCSTGCCGAATTCGGCACGANVGVNCGAGCTCG

consensusID : consensus_8518#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [GGACCGGGAGCCCGCCCGGCGATGGCGATGGCCTGCCTCAACCCTCTCGCGCTGCTCCCCGCGCCTGGCCTACGGAGGTAGAGCGGCCCCGCGGCGCTGCTGCTCGGTGGTGGTGCCCACATCCTCCGCGCGCGCCGCGGCGGGTCGCTGCAGATGGCGGCTCGCGGACGTGGCGGAGGAGCCGCAGGTCGTGCTGCAGCAGGAGCACAATCACCGGACGGAGGGGTCTGGCGATGCCGGCGCGGAGGCGGCGGCCGACGCCTCTTCCGAGCTAGTTCTCGTCCCCGGCGGGACCGGTGGCGTAGGGCAGTTGGTGGTGGCATCTTTACTGAGCAGG]

[+] EMBL CB665105             [GGACCGGGAGCCCGCCCGGCGATGGCGATGGCCTGCCTCAACCCTCTCGCGCTGCTCCCCGCGCCTGGCCTACGGAGGTAGAGCGGCCCCGCGGCGCTGCTGCTCGGTGGTGGTGCCCACATCCTCCGCGCGCGCCGCGGCGGGTCGCTGCAGATGGCGGCTCGCGGACGTGGCGGAGGAGCCGCAGGTCGTGCTGCAGCAGGAGCACAATCACCGGACGGAGGGGTCTGGCGATGCCGGCGCGGAGGCGGCGGCCGACGCCTCTTCCGAGCTAGTTCTCGTCCCCGGCGGGACCGGTGGCGTAGGGCAGTTGGTGGTGGCATCTTTACTGAGCAGG]




>consensus_8518#2
GGACCGGGAGCCCGCCCGGCGATGGCGATGGCCTGCCTCAACCCTCTCGCGCTGCTCCCC
GCGCCTGGCCTACGGAGGTAGAGCGGCCCCGCGGCGCTGCTGCTCGGTGGTGGTGCCCAC
ATCCTCCGCGCGCGCCGCGGCGGGTCGCTGCAGATGGCGGCTCGCGGACGTGGCGGAGGA
GCCGCAGGTCGTGCTGCAGCAGGAGCACAATCACCGGACGGAGGGGTCTGGCGATGCCGG
CGCGGAGGCGGCGGCCGACGCCTCTTCCGAGCTAGTTCTCGTCCCCGGCGGGACCGGTGG
CGTAGGGCAGTTGGTGGTGGCATCTTTACTGAGCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8518#0      TCTTTTTTTTTAGTACCAAATCTAATTACCACCAATGCGGTCTTGGGATTAGAATTGCTA 60
consensus_8518#1      ---TTTTTTTTAGTACCAAATCTAATTACCACCAATGCGGTCTTGGGATTAGAATTGCTA 57
consensus_8518#2      ---------------------------------------------GGACCGGGA--GCCC 13
                                                                   ***   * *  **  

consensus_8518#0      AAATCTCATTACATGATGATATGAATTGTACACTACTAGTTAACTACAATGGACTAAACT 120
consensus_8518#1      AAATCTCATTACATGATGATATGAATTGTACACTACTAGTTAACTACAATGGACTAAACT 117
consensus_8518#2      GCCCGGCGATG-GCGATGGCCTGCCTCA-ACCCTCTCGCGCTGCTCCCCGCGCCTGGCCT 71
                            *  *    ****   **  *   ** **         ** *    * **   **

consensus_8518#0      ATCTCAATGGAATTCCACTAAAGTAC-ACTATACATGAACAAAATACATCACGATGAGGG 179
consensus_8518#1      ATCTCAATGGAATTCCACTAAAGTAC-ACTATACATGAACAAAATACATCACGATGAGGG 176
consensus_8518#2      ACGGAGGTAGAGCGGCCCCGCGGCGCTGCTGCTCGGTGGTGGTGCCCA-CATCCTCCGCG 130
                      *      * **    * *    *  *  **   *            ** **   *  * *

consensus_8518#0      TGAGCTAATGCCATTAATTTCATTGAACAGCTCTGAACAGCTCCTTCCATTTCTCTGGGT 239
consensus_8518#1      TGAGCTAATGCCATTAATTTCATTGAACAGCTCTGAACAGCTCCTTCCATTTCTCTGGGT 236
consensus_8518#2      CGCGCCGCGGCGGGTCGCTGCAGATGGCGGCTC-GCGGACGTGGCGGAGGAGCCGCAGGT 189
                       * **    **   *   * **     * **** *   *  *          *    ***

consensus_8518#0      CGCTCCCAGGTCCTTCGCCCTTCACCGAGTTGATCTCGTATATTTGTCCTTCTGTGAATT 299
consensus_8518#1      CGCTCCCAGGTCCTTCGCCCTTCACCGAGTTGATCTCGTATATTTGTCCTTCTGTGAATT 296
consensus_8518#2      CGTGCTGCAGCAGGAGCACAATCACCGGACGGAGGG-GTCTGGCGATGCCGGCGCGGAGG 248
                      **  *    *        *  ******    **    ** *     * *    * * *  

consensus_8518#0      CAATATCCAAAGCTTG----GATACAGGCTTCTGCCACCACCAGTCTGCTTGCTTCTCCC 355
consensus_8518#1      CAATATCCAAAGCTTG----GATACAGGCTTTNCCTCSTGCCGAATTCGGCACGAN-VGV 351
consensus_8518#2      CGGCGGCCGACGCCTCTTCCGAGCTAGTTCTCGTCCCCGGCGGGACCGGTGGCGTAGGGC 308
                      *     ** * ** *     **   **   *   *     *           *       

consensus_8518#0      ACAAGCTTGTCACCTTCGCCCATGACAACTGCCCGTCTTTCTCCAGCAGTAGCTTGAAGA 415
consensus_8518#1      NCGAGCTCG--------------------------------------------------- 360
consensus_8518#2      AGTTGGTGGTGGCATCTTTACTGAGCAGG------------------------------- 337
                          * * *                                                   

consensus_8518#0      AGTGTGTTAAGGTCATAAGAAGTGTAGGGTCCATCGGTTAATCTCCCAGGCCTTATGATG 475
consensus_8518#1      ------------------------------------------------------------
consensus_8518#2      ------------------------------------------------------------
                                                                                  

consensus_8518#0      GTGAAAGGTATGCCTGAGTTCTGGACAAAGTCCTCTGCCATCTTCTTGTACTTAAGCACA 535
consensus_8518#1      ------------------------------------------------------------
consensus_8518#2      ------------------------------------------------------------
                                                                                  

consensus_8518#0      CCAAACAGATTCATGATACTCCATGGTAGTTCATTGTATTTTGTAACGCCGATGGATGAC 595
consensus_8518#1      ------------------------------------------------------------
consensus_8518#2      ------------------------------------------------------------
                                                                                  

consensus_8518#0      ACCAGAACCAGTCTCTTGATTGTCCGTGGCATGGCGCTCACCAGATTACGGGTGCCATCC 655
consensus_8518#1      ------------------------------------------------------------
consensus_8518#2      ------------------------------------------------------------
                                                                                  

consensus_8518#0      CAATCAACACGTTCAGGAGTGTTATCCCCATCCCAGCGCTTTGAAGGGAATGCTGTAGTT 715
consensus_8518#1      ------------------------------------------------------------
consensus_8518#2      ------------------------------------------------------------
                                                                                  

consensus_8518#0      CCAGTAGTGCAGATGACATGCGTAACTCCCTCAAATATTTCTGGATCCAATTCTGCAGCA 775
consensus_8518#1      ------------------------------------------------------------
consensus_8518#2      ------------------------------------------------------------
                                                                                  

consensus_8518#0      TTTCTCGTGTCAGCCTTGTAAGCCTGAAATACGCTCTCATCTTGCTCGCCGAATAGGGTC 835
consensus_8518#1      ------------------------------------------------------------
consensus_8518#2      ------------------------------------------------------------
                                                                                  

consensus_8518#0      ACTGCCTTTGCAGGATCTCTTAGCAACAACCTTGTCTTGATGTTCCTGCTCAGTAAAGAT 895
consensus_8518#1      ------------------------------------------------------------
consensus_8518#2      ------------------------------------------------------------
                                                                                  

consensus_8518#0      GCCACCACCAACTGCCCTACGCCGCCGGTCCCGCCGACGACGAGAACTAGCTTGGACGAG 955
consensus_8518#1      ------------------------------------------------------------
consensus_8518#2      ------------------------------------------------------------
                                                                                  

consensus_8518#0      GCGTCGGCCGCCGCCTCCGCGCCGGCCTCACCCGACCC 993
consensus_8518#1      --------------------------------------
consensus_8518#2      --------------------------------------