These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 473 fasta sequence [GTTCCAGGCGCCCGCCGGNTATTACNGCGTGGCACCTGCCGCCGTNGGCGCCCTACGACCACCA-GGGATGGTACTACGGCAACCGGCAGCC-GTACTACCACCAGCAGCAATGCTA-CGAGGACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTCATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTT-TTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATCTGATAAATGACAATGAGAACCATAATATACTAGTAGTAAGCAGTACAAAAAAA] [+] EMBL BI805896 [GTTCCAGGCGCCCGCCGGNTATTACNGCGTGGCACCTGCCGCCGTNGGCGCCCTACGACCACCATGGGATGNTA TACGGCAACCGGCATCCTGTANTACCACCAGCAGCAATGCTATCGAGGACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTCATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTTCCCTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATCTGATAAATGACAATGCGAACCATAATAaaaa ] [+] EMBL AU166808 [ GGCACC GCCGCCGGCGGCGCCCTACGACCACCA GGGATGGTACTACGGCAACCGGCAGCC GTACTACCACCAGCAGCAATGCTA CGAGGACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTCATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTT TTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATCTGATAAATGACAATGAGAACCATAATATACTAGTAGTAAGCAGTACAAAAAA ] [+] EMBL AU222549 [ CCCTACGACCACCA GGGATGGTANTACGGCAACCGGCAGCC GTACTACCACCAGCAGCAATGCTA CGAGGACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTCATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTT TTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATCTGATAAATGACAATGAGAACCATAATATACTAGTAGTAAGCAGTACAAAAAAA] [+] EMBL CF312787 [ A CGAGGACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTCATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTT TTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCT ] consensusID : consensus_8519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [GGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGNCGACGGGNGCAATCAGTGCGTGTGATCACTNTCGCTCACACTCACTCATCACTAGCTCATGGCCNGTGGTNAAAAAAAAGAAGAAGAAAATATTTCTTTTTTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTNTTCCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU181172 [GGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATGGNCGACGGGNGCAATCAGTGCGTGTGATCACTNTCGCTCACACTCACTCATCACTAGCTCATGGCCNGTGGTNAAAAAAAAGAAGAAGAAAATATTTCTTTTTTTTTTGGGTGTCGCCTTCTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGTGAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTNTTCCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8519#0 GTTCCAGGCGCCCGCCGGNTATTACNGCGTGGCACCTGCCGCCGTNGGCGCCCTACGACC 60 consensus_8519#1 ------------------------------------------------------------ consensus_8519#0 ACCAGGGATGGTACTACGGCAACCGGCAGCCGTACTACCACCAGCAGCAATGCTACGAGG 120 consensus_8519#1 ------------------------------------------------------------ consensus_8519#0 ACCCCAACGCCGGCGGGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATG 180 consensus_8519#1 ---------------GGTGCAGCGTCATGTGATGGCCATCTCGCCATCGCCATCGCCATG 45 ********************************************* consensus_8519#0 GACGACGGGAGCAATCAGTGCGTGTGATCACTCTCGCTCACACTCACTCATCACTAGCTC 240 consensus_8519#1 GNCGACGGGNGCAATCAGTGCGTGTGATCACTNTCGCTCACACTCACTCATCACTAGCTC 105 * ******* ********************** *************************** consensus_8519#0 ATGGCCAGTGGTAAAAAAAAAGAAGAAGAAAATATTTCTTTTTTTTTTGGGTGTCGCCTT 300 consensus_8519#1 ATGGCCNGTGGTNAAAAAAAAGAAGAAGAAAATATTTCTTTTTTTTTTGGGTGTCGCCTT 165 ****** ***** *********************************************** consensus_8519#0 CTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGT 360 consensus_8519#1 CTTCTTGTTTATTATGCCTGTGCCTTTTTTTGTTTATTTAGGGTGTTGAGTTGTGCATGT 225 ************************************************************ consensus_8519#0 GAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTCTTCCCTTTATGACTATC 420 consensus_8519#1 GAACAGTTGAGTTGTGATGTTCTTGGTGTCTAGTTGGATCTTNTTCCCTTTTAAAAAAAA 285 ****************************************** ******** * * consensus_8519#0 TGATAAATGACAATGAGAACCATAATATACTAGTAGTAAGCAGTACAAAAAAA 473 consensus_8519#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 324 * *** * ** * ** * ** * * * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||