These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1750 fasta sequence [CCCACTCCGTCGTCTTCCCCGGAAACGGTCACGCGACTCGCGAGCTCCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGTCGCGGCCTCCCACCTCTCCCTCTACCCCACCACACTCGCCGCCGGCGAGGCCTGACGGCGATCCCCAACACTGCCCCCCGGCGGCTGCCGTTGGATCGTGGGAGGGAGGATTGGCCGGTTGTACTACAGTTGAGGGAGGGAGGAGCTACCGTTTGTGATCCGCCGCCTGCGACCGAGCGTCCCCGTAGTTAGATCCGGCTCGACCACCACGGCCTCCGGCGCTCTGAGCGGCTGCTCTGTGTGAGAGGCCCTGCTGCTGAAAGAGAATCCATGGCCGCGGCGAGCGGACCGTGGCTGCTCGTCGTGGTCGTGGCTTGGGTCTTGGGCGTTGCGGCCGCCTCGTCGTCGTCGTCATCGCCTGGGCAGGCAGGTACCAGCCAGAAATTCAACAAGTGTATGCCGTGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTTGATCGGCCAGCTTGCTCAACATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGACTTGATTATGATCTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAAGGTTCTCATCGCCGTCTAGTCTATCATGTGGAATTTGCTAACTGTGCAGATGCTATGGTTAATTTCCTTGATAACTATGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTGTTTGCTGACCCATTTGAGCTACAACATTTTGTTGAGCGGAAAGTATATCTTGATATGGTTGTTTTCGGAGACACCAACCTTGAACTGCCTTCGGCTCTATCCAACCGGTCATCTGTGGAAATCCATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTCCAAATCAAAATATGTTATGTGATTACTTTTTCAGACATTTATAACCCCATTATCTTGTTCATGTCTAGAACACAATCAAAGGGAAAGTTCTTTGCAGTTGAAGTTGCGAACCTGCAGTTGCCTGACCACTGATAACTGACCAGGGCATCTGCCTGCAACATCACAAGGAGTTATAAAAGGAAAAGAATAATTTCCTTCATGAGGGCAGGAAGGAATGCCCAGTTGTTGAATTCTGAGTTGATCTGGATCAGAAGCTACCCTATTTTATTGTCTTGGAAGCAGCCAAGCAGGTGAAGCATGAATTGGAAGCTTGTGTTAACAACTGTACTCCTTTTGTCTTTGCACGCTTAATAGACTGGCACAGACAGTCATTCTCTGGTTATAAAAATCCAGAGCTGTCCCATTTTTAATTTCAGTAAGGCAGCATGCTACCCCAGGATCAGGTGAGCAGTTCTGTTCTGTCTGACAGACTGGATCTGTTGGGTGACAAAA] [+] EMBL AK100450 [CCCACTCCGTCGTCTTCCCCGGAAACGGTCACGCGACTCGCGAGCTCCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGTCGCGGCCTCCCACCTCTCCCTCTACCCCACCACACTCGCCGCCGGCGAGGCCTGACGGCGATCCCCAACACTGCCCCCCGGCGGCTGCCGTTGGATCGTGGGAGGGAGGATTGGCCGGTTGTACTACAGTTGAGGGAGGGAGGAGCTACCGTTTGTGATCCGCCGCCTGCGACCGAGCGTCCCCGTAGTTAGATCCGGCTCGACCACCACGGCCTCCGGCGCTCTGAGCGGCTGCTCTGTGTGAGAGGCCCTGCTGCTGAAAGAGAATCCATGGCCGCGGCGAGCGGACCGTGGCTGCTCGTCGTGGTCGTGGCTTGGGTCTTGGGCGTTGCGGCCGCCTCGTCGTCGTCGTCATCGCCTGGGCAGGCAGGTACCAGCCAGAAATTCAACAAGTGTATGCCGTGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTTGATCGGCCAGCTTGCTCAACATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGACTTGATTATGATCTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAAGGTTCTCATCGCCGTCTAGTCTATCATGTGGAATTTGCTAACTGTGCAGATGCTATGGTTAATTTCCTTGATAACTATGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTGTTTGCTGACCCATTTGAGCTACAACATTTTGTTGAGCGGAAAGTATATCTTGATATGGTTGTTTTCGGAGACACCAACCTTGAACTGCCTTCGGCTCTATCCAACCGGTCATCTGTGGAAATCCATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGAT ] [+] EMBL CB662962 [ CGTCGTCTTCCCCGGAAACGGTCACGCGACTCGCGAGCTCCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGTCGCGGCCTCCCACCTCTCCCTCTACCCCACCACACTCGCCGCCGGCGAGGCCTGACGGCGATCCCCAACACTGCCCCCCGGCGGCTGCCGTTGGATCGTGGGAGGGAGGATTGGCCGGTTGTACTACAGTTGAGGGAGGGAGGAGCTACCGTTTGTGATCCGCCGCCTGCGACCGGGCGTCCCCGTAGTTAGATCCGGCTCGACCACCACGGCCTCCGGCGCTCTGAGCGGCTGCTCTGTGTGAGAGGCCCTGCTGCTGAAAGAGAATCCATGGCCGCGGCGAGCGGACCGTGGCTGCTCGTCGTGGTCGTGGCTTGGGTCTTGGGCGTTGCGGCCGCCTCGTCGTCGTCGTCATCGCCTGGGCAGGCAGGTACCAGCCAGAAATTCAACAAGTGTATGCCGTGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTTGATCGGCCAGCTTGCTCAACATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGACTTGATTATGATCTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAAGGTTCTCATCGCCGTCTAGTCTATCATGTGGAATTTGCTAACTGTGCAGATGCTATGGTTAATTTCCTTGATAACTATGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTGTTTGCTGACCCATTTGAGCTACAACATTTTGTTGAGCGGAAAG ] [-] EMBL CB662963 [ ACAAGTGTATGCCGTGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTGNATCGGCCAGCTTGCTCAACATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGACTTGATTATGATCTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAAGGTTCTCATCGCCGTCTAGTCTATCATGTGGAATTTGCTAACTGTGCAGATGCTATGGTTAATTTCCTTGATAACTATGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTGTTTGCTGACCCATTTGAGCTACAACATTTTGTTGAGCGGAAAGTATATCTTGATATGGTTGTTTTCGGAGACACCAACCTTGAACTGCCTTCGGCTCTATCCAACCGGTCATCTGTGGAAATCCATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTCCAAATCAAAATATGTTATGTGATTACT ] [-] EMBL CB663288 [ ACCCTGTGGAGACGAAGCGCACATAGGATTTGTATTTAGTATCACTTTTCTTTCAGCTATAGGGTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTCCAAATCAAAATATGTTATGTGATTACTTTTTCAGACATTTATAACCCCATTATCTTGTTCATGTCTAGAACACAATCAAAGGGAAAGTTCTTTGCAGTTGAAGTTGCGAACCTGCAGTTGCCTGACCACTGATAACTGACCAGGGCATCTGCCTGCAACATCACAAGGAGTTATAAAAGGAAAAGAATAATTTCCTTCATGAGGGCAGGAAGGAATGCCCAGTTGTTGAATTCTGAGTTGATCTGGATCAGAAGCTACCCTATTTTATTGTCTTGGAAGCAGCCAAGCAGGTGAAGCATGAATTGGAAGCTTGTGTTAACAACTGTACTCCTTTTGTCTTTGCACGCTTAATAGACTGGCACAGACAGTCATTCTCTGGTTATAAAAATCCAGAGCTGTCCCATTTTTAATTTCAGTAAGGCAGCATGCTACCCCAGGATCAGGTGAGCAGTTCTGTTCTGTCTGACAGACTGGATCTGTTGGGTGACAAAA] consensusID : consensus_8525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [GAGGTGGGAGTTTTTNCNTATTNTAGGATGCAAGGCAAGTAGGTAATTCCTGAAATAGAGCCANTNGGNGTAAAGAAATTTCCGGATGGGTGTTGGCNGACCATTGAGTACAAAATTTGGNGAGGGGAAGTANNTTTGANAGGGTGTTTNGGAGAACCAACCTGGAATGCTTCGGTCTATCCAACCGGTCATCTGGGAAATCCATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTCCAAATCAAAATATGTTATGTGAT] [-] EMBL BE229181 [GAGGTGGGAGTTTTTNCNTATTNTAGGATGCAAGGCAAGTAGGTAATTCCTGAAATAGAGCCANTNGGNGTAAAGAAATTTCCGGATGGGTGTTGGCNGACCATTGAGTACAAAATTTGGNGAGGGGAAGTANNTTTGANAGGGTGTTTNGGAGAACCAACCTGGAATGCTTCGGTCTATCCAACCGGTCATCTGGGAAATCCATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTCCAAATCAAAATATGTTATGTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8525#0 CCCACTCCGTCGTCTTCCCCGGAAACGGTCACGCGACTCGCGAGCTCCCGCCGCCGCCGC 60 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 CGCCGTCGCCGTCGCCGTCGCGGCCTCCCACCTCTCCCTCTACCCCACCACACTCGCCGC 120 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 CGGCGAGGCCTGACGGCGATCCCCAACACTGCCCCCCGGCGGCTGCCGTTGGATCGTGGG 180 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 AGGGAGGATTGGCCGGTTGTACTACAGTTGAGGGAGGGAGGAGCTACCGTTTGTGATCCG 240 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 CCGCCTGCGACCGAGCGTCCCCGTAGTTAGATCCGGCTCGACCACCACGGCCTCCGGCGC 300 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 TCTGAGCGGCTGCTCTGTGTGAGAGGCCCTGCTGCTGAAAGAGAATCCATGGCCGCGGCG 360 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 AGCGGACCGTGGCTGCTCGTCGTGGTCGTGGCTTGGGTCTTGGGCGTTGCGGCCGCCTCG 420 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 TCGTCGTCGTCATCGCCTGGGCAGGCAGGTACCAGCCAGAAATTCAACAAGTGTATGCCG 480 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 TGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTTGATCGGCCAGCTTGCTCAA 540 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 CATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGACTTGATTATGAT 600 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 CTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAAGGTTCTCATCGC 660 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 CGTCTAGTCTATCATGTGGAATTTGCTAACTGT-GCAGATGCTATGGTTAATTTCCTTGA 719 consensus_8525#1 ------------GAGGTGGGAGTTTTTNCNTATTNTAGGATGCAAGGCAAGT-----AGG 43 * **** * ** * * * ** * ** * * * consensus_8525#0 TAACTA-TGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTGTTTGCTGACC 778 consensus_8525#1 TAATTCCTGAAATAGAGCCANTNGGNGTAAAGAAATTTCCGGATGG-GTGTTGGCNGACC 102 *** * *** * * * * ** * ** * *** **** ***** ** **** consensus_8525#0 CATTTGAGCTACAACATTTTGTTGAGCGGAAAGTATATCTTGATATGGTTGTTTTCGGAG 838 consensus_8525#1 A--TTGAG-TACAAAATTTGGN-GAG-GGGAAGTANNT-TTGANAGGGT--GTTTNGGAG 154 ***** ***** **** * *** ** ***** * **** * *** *** **** consensus_8525#0 ACACCAACCTTGAACTGCCTTCGGCTCTATCCAACCGGTCATCTGTGGAAATCCATGTTG 898 consensus_8525#1 A-ACCAACCTGGAATG--CTTCGG-TCTATCCAACCGGTCATCTG-GGAAATCCATGTTG 209 * ******** *** ****** ******************** ************** consensus_8525#0 ATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTA 958 consensus_8525#1 ATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTA 269 ************************************************************ consensus_8525#0 GATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGC 1018 consensus_8525#1 GATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGC 329 ************************************************************ consensus_8525#0 TTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATC 1078 consensus_8525#1 TTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATC 389 ************************************************************ consensus_8525#0 TTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACA 1138 consensus_8525#1 TTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACA 449 ************************************************************ consensus_8525#0 TAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCA 1198 consensus_8525#1 TAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCA 509 ************************************************************ consensus_8525#0 TAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTC 1258 consensus_8525#1 TAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTC 569 ************************************************************ consensus_8525#0 CAAATCAAAATATGTTATGTGATTACTTTTTCAGACATTTATAACCCCATTATCTTGTTC 1318 consensus_8525#1 CAAATCAAAATATGTTATGTGAT------------------------------------- 592 *********************** consensus_8525#0 ATGTCTAGAACACAATCAAAGGGAAAGTTCTTTGCAGTTGAAGTTGCGAACCTGCAGTTG 1378 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 CCTGACCACTGATAACTGACCAGGGCATCTGCCTGCAACATCACAAGGAGTTATAAAAGG 1438 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 AAAAGAATAATTTCCTTCATGAGGGCAGGAAGGAATGCCCAGTTGTTGAATTCTGAGTTG 1498 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 ATCTGGATCAGAAGCTACCCTATTTTATTGTCTTGGAAGCAGCCAAGCAGGTGAAGCATG 1558 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 AATTGGAAGCTTGTGTTAACAACTGTACTCCTTTTGTCTTTGCACGCTTAATAGACTGGC 1618 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 ACAGACAGTCATTCTCTGGTTATAAAAATCCAGAGCTGTCCCATTTTTAATTTCAGTAAG 1678 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 GCAGCATGCTACCCCAGGATCAGGTGAGCAGTTCTGTTCTGTCTGACAGACTGGATCTGT 1738 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 TGGGTGACAAAA 1750 consensus_8525#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||