These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 810 fasta sequence [TTTAAAAAAATCTCTTTAGCCATGAAGGAATCTCTTACATGTAGACCCTACTCTTCTCTGGGCCCACTCATATGGCCGTAAAAATGGTTTTTCCCAGCATGATACTAATGTTACAGCAGCTTACAACAAAGAAGGCAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTCAGGAAGTATATGTGGCCTTCAAACAAAAAAGAAGGCTCAGGACTCAGAAGTATATGGAGAGCGTGCCGTCGATCCTGTCTTGCAGCTTGCCGCACTGCTCCAGTAGCCTCGCAAGCTTGTCGTCCCTCTCAATGGACACCAATTCTCTAAGCTCCGGCCTTCTCGGCATCCGCACGCCATCACCAGCTCCAAGCACACCGTTCACCCCACCGGTGGTATCCGCCGGTGGTTGAGGTTCATAGTGAACCTGGGTGGGCGGTTGGGGTGGCAACGGTTTCGCCGGTGGCGGGGCGCTGACGGCATCGAGATCGCAGCTGATCTCGATGATCTCATCTAGGGAGAGGCGGGACGACACGGAAGGCGCCATGCCGCGATCCTCCAGAATGGGTGCCGCCTCATCCGTGGTGTTGCTGCTGGCAGAGAGATCATGCTGGGTTCCTCCATTTGGAAGTGAATCAGCTGCCGGTGTCTGATAAAGATGCTGACTCAGGACATAAGCTTCTGAAAACTCTCCTGTGGAAAGCTTGGCTAGTCTCCAGTTGAAAATTCGGCGGAAGATAGTAACCCATCTTGGCACAAGGTGGTACTGCGAGCCACGGAGCTCGAGGCCGACACCTTTCTGCACCA] [+] EMBL CB628486 [TTTAAAAAAATCTCTTTAGCCATGAAGGAATCTCTTACATGTAGACCCTACTCTTCTCTGGGCCCACTCATATGGCCGTAAAAATGGTTTTTCCCAGCATGATACTAATGTTACAGCAGCTTACAACAAAGAAGGCAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTCAGGAAGTATATGTGGCCTTCAAACAAAAAAGAAGGCTCAGGACTCAGAAGTATATGGAGAGCGTGCCGTCGATCCTGTCTTGCAGCTTGCCGCACTGCTCCAGTAGCCTCGCAAGCTTGTCGTCCCTCTCAATGGACACCAATTCTCTAAGCTCCGGCCTTCTCGGCATCCGCACGCCATCACCAGCTCCAAGCACACCGTTCACCCCACCGGTGGTATCCGCCGGTGGTTGAGGTTCATAGTGAACCTGGGTGGGCGGTTGGGGTGGCAACGGTTTCGCCGGTGGCGGGGCGCTGACGGCATCGAGATCGCAGCTGATCTCGATGATCTCATCTAGGGAGAGGCGGGACGACACGGAAGGCGCCATGCCGCGATCCTCCAGAATGGGTGCCGCCTCATCCGTGGTGTTGCTGCTGGCAGAGAGATCATGCTGGGTTCCTCCATTTGGAAGTGAATCAGCTGCCGGTGTCTGATAAAGATGCTGACTCAGGACATAAGCTTCTGAAAACTCTCCTGTGGAAAGCTTGGCTAGTCTCCAGTTGAAAATTCGGCGGAAGATAGTAACCCATCTTGGCACAAGGTGGTACTGCGAGCCACGGAGCTCGAGGCCGACACCTTTCTGCACCA] consensusID : consensus_8534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 802 fasta sequence [TCACGCCAAATTAAAAAAAAAATTCTCTTTAGTACGGTTGGAATCTCTTACATGTAGACCCTACTCTACTCTGGGCCCACTCATATGGCCGTAAAAATGGTTTTTCACAGCATGATACTAATGTTACAGCAGCTTACAACAAAGAAGGCAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTTAGGAAGTATATGTGGCCTTCAAACAAAAAAGAAGGCTCATGACTCAGAAGTATATGGAGAGCGTGCCGTCGATCCTGTCTTGCAGCTTGCTGCACTGCTCCAGTAGCCTCGCAAGCTTGTCATCCCTCTCAATGGGCACCAAATCTCTAAGCTCCGTCCTTCTCGGCATCCGCACGCCATCACCAGCTCCAAGCACACCGTTCACCCCACCCGGTGGTTGAGGTTCATAGCGAACCTGGGTGGGCGGTTGGGGTGGCAACGGTTTCGCCGGTGGCAGGGCGCTGACGGCATCGAGATCGCAGCTGATCTCGATGATCTCATCTAGGGAGAGGCGGGACGACACGGAAGGCGCCATGCCGCGATCCTCCAGAATGGGTGCCGCCTCATCCGTGGTGTTGCTGCTGGCAGAGAGATCATGCTGGGTTCCTCCATTTGGAAGTGAATCAGCTGCCGGTGTCTGATAAAGATGCTGACTCAGGACATAAGCTTCTGAAAACTCTCCTGTGGAAAGCTTGGCTAGTCTCCAGTTGAAAATTCGGCGGAAGATAGTAACCCATCTTGGCACAAGGTGGTACTGCGAGCCACGGAGCTCGAGGCCGACACCTT] [-] EMBL AK059345 [TCACGCCAAATTAAAAAAAAAATTCTCTTTAGTACGGTTGGAATCTCTTACATGTAGACCCTACTCTACTCTGGGCCCACTCATATGGCCGTAAAAATGGTTTTTCACAGCATGATACTAATGTTACAGCAGCTTACAACAAAGAAGGCAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTTAGGAAGTATATGTGGCCTTCAAACAAAAAAGAAGGCTCATGACTCAGAAGTATATGGAGAGCGTGCCGTCGATCCTGTCTTGCAGCTTGCTGCACTGCTCCAGTAGCCTCGCAAGCTTGTCATCCCTCTCAATGGGCACCAAATCTCTAAGCTCCGTCCTTCTCGGCATCCGCACGCCATCACCAGCTCCAAGCACACCGTTCACCCCACCCGGTGGTTGAGGTTCATAGCGAACCTGGGTGGGCGGTTGGGGTGGCAACGGTTTCGCCGGTGGCAGGGCGCTGACGGCATCGAGATCGCAGCTGATCTCGATGATCTCATCTAGGGAGAGGCGGGACGACACGGAAGGCGCCATGCCGCGATCCTCCAGAATGGGTGCCGCCTCATCCGTGGTGTTGCTGCTGGCAGAGAGATCATGCTGGGTTCCTCCATTTGGAAGTGAATCAGCTGCCGGTGTCTGATAAAGATGCTGACTCAGGACATAAGCTTCTGAAAACTCTCCTGTGGAAAGCTTGGCTAGTCTCCAGTTGAAAATTCGGCGGAAGATAGTAACCCATCTTGGCACAAGGTGGTACTGCGAGCCACGGAGCTCGAGGCCGA ] [+] EMBL CB658977 [ TCTCTTTAGTACGGTTGGCATTTCTTACATGTAGACCCTACTCTACTCTGGGCCCACTCATATGGCCGTAAAAATGGTTTTTCACAGCATGATACTAATGTTACAGCAGCTTACAACAAAGAAGGCAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTCAGGAAGTATATGTGGCCTTCAAACAAAAAAGAAGGCTCATGACTCAAAAGTATATGGAGAGCGTGCCGTCGATCCTGTCTTGCAGCTTGCTGCACTGCTCCAGTAGCCTCGCAAGCTTGTCATCCCTCTCAATGGGCACCAAATCTCTAAGCTCCGTCCTTCTCGGCATCCGCACGCCATCACCAGCTCCAAGCACACCGTTCACCCCACCCGGTGGTTGAGGTTCATAGCGAACCTGGGTGGGCGGTTGGGGTGGCAACGGTTTCGCCGGTGGCAGGGCGCTGACGGCATCGAGATCGCAGCTGATCTCGATGATCTCATCTAGGGAGAGGCGGGACGACACGGAAGGCGCCATGCCGCGATCCTCCAGAATGGGTGCCGCCTCATCCGTGGTGTTGCTGCTGGCAGAGAGATCATGCTGGGTTCCTCCATTTGGAAGTGAATCAGCTGCCGGTGTCTGATAAAGATGCTGACTCAGGACATAAGCTTCTGAAAACTCTCCTGTGGAAAGCTTGGCTAGTCTCCAGTTGAAAATTCGGCGGAAGATAGTAACCCATCTTGGCACAAGGTGGTACTGCGAGCCACGGAGCTCGAGGCCGACACCTT] consensusID : consensus_8534#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [ATTCTCTTTAGTACGGTTGGAATCTCTTACATGTAAACCCTACTCTACTCTGGGCCCACTCATATGGCCGTAAAAATGGTTTTTCACAGCATGATACTAATGTTACAGCAGCTTACAACAAAGAAGGCAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTCAGGAAGTATATGTGGCCTTCAAACAAAAAAGAAGGCTCATGACTCAGAAGTATATGGAGAGCGTGCCGTCGATCCTGTCTTGCAGCTTGCTGCACTGCTCCAGTTAGCCTCCGCAAGCTTGTCATCCCTCTCAATGGGCACCAAATCTCTAAGCTCCCGTCCTTCTCGGCATCCGCACGCCCATCACCAGCTCCCAGCACACCGTTCACCCCACCCGGTGGTTGAAGTTCAATAACAAACCTGGTTGGCGGTTNGGGTTGGCAACGGTTCCCCCGGTGGCANGGCGCTGAACGCCTCAAAATTCCCACTNATTNCAAAATTTCNTCTAGGAAAAGGNGGANAANCGGAAGNNCCTCCCNATCCCCCAAATGGTTCCCCCNCCTTGTNTTTCNCGGNAAAAANAAGCNGGTCCCCATTGGAATAACACGCGGTTTTNAAAANCAACCGANACTCNAANNCCTNGAAACNGNNTCCCCTTNAATCCGGAAAAAATACCCCCT] [+] EMBL BE229246 [ATTCTCTTTAGTACGGTTGGAATCTCTTACATGTAAACCCTACTCTACTCTGGGCCCACTCATATGGCCGTAAAAATGGTTTTTCACAGCATGATACTAATGTTACAGCAGCTTACAACAAAGAAGGCAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTCAGGAAGTATATGTGGCCTTCAAACAAAAAAGAAGGCTCATGACTCAGAAGTATATGGAGAGCGTGCCGTCGATCCTGTCTTGCAGCTTGCTGCACTGCTCCAGTTAGCCTCCGCAAGCTTGTCATCCCTCTCAATGGGCACCAAATCTCTAAGCTCCCGTCCTTCTCGGCATCCGCACGCCCATCACCAGCTCCCAGCACACCGTTCACCCCACCCGGTGGTTGAAGTTCAATAACAAACCTGGTTGGCGGTTNGGGTTGGCAACGGTTCCCCCGGTGGCANGGCGCTGAACGCCTCAAAATTCCCACTNATTNCAAAATTTCNTCTAGGAAAAGGNGGANAANCGGAAGNNCCTCCCNATCCCCCAAATGGTTCCCCCNCCTTGTNTTTCNCGGNAAAAANAAGCNGGTCCCCATTGGAATAACACGCGGTTTTNAAAANCAACCGANACTCNAANNCCTNGAAACNGNNTCCCCTTNAATCCGGAAAAAATACCCCCT] consensusID : consensus_8534#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGGGATTACGCCAAATTTTTAAAAAAATCTCTTTAGTACGGTTGGAATCTCTTACATGTANACCCTACTCTTCTCTGGGCCCACTCATATGGCCGTAAAAATGGTTTTTCACAGCATGATACTAATGTTACAGCAGCTTACAACAAAGAAGGNAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTCAGGAAGTATATGTGGCCTTCAAACAAAAAAGAAGGCTCAGGACTCACAAGTATATGGAGAGCGTGCCGTCGATCCTGTCTTGCAGCTTGCCGCACTGCTCCANTANCCTCGCAAGCTTTGTCGTCCCTCTCAATGGANACCAATTCTCTAAGCTCCGGGCTTCTCGGNATCCGCACCCCATCANCAGCTCCANCACACGNTCACCCACCGGTGGTATCNCCNGTGGTGAAGTCAAATGAACTGGTNGNGGTGGG] [-] EMBL AA753737 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGGGATTACGCCAAATTTTTAAAAAAATCTCTTTAGTACGGTTGGAATCTCTTACATGTANACCCTACTCTTCTCTGGGCCCACTCATATGGCCGTAAAAATGGTTTTTCACAGCATGATACTAATGTTACAGCAGCTTACAACAAAGAAGGNAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTCAGGAAGTATATGTGGCCTTCAAACAAAAAAGAAGGCTCAGGACTCACAAGTATATGGAGAGCGTGCCGTCGATCCTGTCTTGCAGCTTGCCGCACTGCTCCANTANCCTCGCAAGCTTTGTCGTCCCTCTCAATGGANACCAATTCTCTAAGCTCCGGGCTTCTCGGNATCCGCACCCCATCANCAGCTCCANCACACGNTCACCCACCGGTGGTATCNCCNGTGGTGAAGTCAAATGAACTGGTNGNGGTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8534#0 ------------------------------------------------TTTAAAAAAA-- 10 consensus_8534#1 --------------------------------------TCACGCCAAATTAAAAAAAAAA 22 consensus_8534#2 -----------------------------------------------------------A 1 consensus_8534#3 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGGGATTACGCCAAATTTTTAAAAAAA 60 consensus_8534#0 -TCTCTTTAGCCATGAAGGAATCTCTTACATGTAGACCCTACTCTTCTCTGGGCCCACTC 69 consensus_8534#1 TTCTCTTTAGTACGGTTGGAATCTCTTACATGTAGACCCTACTCTACTCTGGGCCCACTC 82 consensus_8534#2 TTCTCTTTAGTACGGTTGGAATCTCTTACATGTAAACCCTACTCTACTCTGGGCCCACTC 61 consensus_8534#3 -TCTCTTTAGTACGGTTGGAATCTCTTACATGTANACCCTACTCTTCTCTGGGCCCACTC 119 ********* * ***************** ********** ************** consensus_8534#0 ATATGGCCGTAAAAATGGTTTTTCCCAGCATGATACTAATGTTACAGCAGCTTACAACAA 129 consensus_8534#1 ATATGGCCGTAAAAATGGTTTTTCACAGCATGATACTAATGTTACAGCAGCTTACAACAA 142 consensus_8534#2 ATATGGCCGTAAAAATGGTTTTTCACAGCATGATACTAATGTTACAGCAGCTTACAACAA 121 consensus_8534#3 ATATGGCCGTAAAAATGGTTTTTCACAGCATGATACTAATGTTACAGCAGCTTACAACAA 179 ************************ *********************************** consensus_8534#0 AGAAGGCAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTCAGGAAG 189 consensus_8534#1 AGAAGGCAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTTAGGAAG 202 consensus_8534#2 AGAAGGCAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTCAGGAAG 181 consensus_8534#3 AGAAGGNAGGAGCGTAACAGCTACAGCTAGTTCTAGTTGCCCCTTCAAACCTTCAGGAAG 239 ****** ********************************************** ****** consensus_8534#0 TATATGTGGCCTTCAAACAAAAAAGAAGGCTCAGGACTCAGAAGTATATGGAGAGCGTGC 249 consensus_8534#1 TATATGTGGCCTTCAAACAAAAAAGAAGGCTCATGACTCAGAAGTATATGGAGAGCGTGC 262 consensus_8534#2 TATATGTGGCCTTCAAACAAAAAAGAAGGCTCATGACTCAGAAGTATATGGAGAGCGTGC 241 consensus_8534#3 TATATGTGGCCTTCAAACAAAAAAGAAGGCTCAGGACTCACAAGTATATGGAGAGCGTGC 299 ********************************* ****** ******************* consensus_8534#0 CGTCGATCCTGTCTTGCAGCTTGCCGCACTGCTCCAGT-AGCCTC-GCAAGCTT-GTCGT 306 consensus_8534#1 CGTCGATCCTGTCTTGCAGCTTGCTGCACTGCTCCAGT-AGCCTC-GCAAGCTT-GTCAT 319 consensus_8534#2 CGTCGATCCTGTCTTGCAGCTTGCTGCACTGCTCCAGTTAGCCTCCGCAAGCTT-GTCAT 300 consensus_8534#3 CGTCGATCCTGTCTTGCAGCTTGCCGCACTGCTCCANT-ANCCTC-GCAAGCTTTGTCGT 357 ************************ *********** * * **** ******** *** * consensus_8534#0 CCCTCTCAATGGACACCAATTCTCTAAGCTCC-GGCCTTCTCGGCATCCGCACGCC-ATC 364 consensus_8534#1 CCCTCTCAATGGGCACCAAATCTCTAAGCTCC-GTCCTTCTCGGCATCCGCACGCC-ATC 377 consensus_8534#2 CCCTCTCAATGGGCACCAAATCTCTAAGCTCCCGTCCTTCTCGGCATCCGCACGCCCATC 360 consensus_8534#3 CCCTCTCAATGGANACCAATTCTCTAAGCTCC-GGGCTTCTCGGNATCCGCACCCC-ATC 415 ************ ***** ************ * ******** ******** ** *** consensus_8534#0 ACCAGCTCCAAGCACACCGTTCACCCCACCGGTGGTATCCGCCGGTGGTTGAGGTTCA-T 423 consensus_8534#1 ACCAGCTCCAAGCACACCGTTCACCCCAC------------CCGGTGGTTGAGGTTCA-T 424 consensus_8534#2 ACCAGCTCCCAGCACACCGTTCACCCCAC------------CCGGTGGTTGAAGTTCAAT 408 consensus_8534#3 ANCAGCTCC-ANCACAC-GNTCACCCA--------------CCGGTGGT--ATCNCCNGT 457 * ******* * ***** * ****** ******** * * * consensus_8534#0 AGTGAACCTGGGTGG-GCGGTTGGGGTGGCAACGGTTTCGCCGGTGGCGGGGCGCTGACG 482 consensus_8534#1 AGCGAACCTGGGTGG-GCGGTTGGGGTGGCAACGGTTTCGCCGGTGGCAGGGCGCTGACG 483 consensus_8534#2 AACAAACCTGGTTGG-CGGTTNGGGTTGGCAACGGTTCCCCCGGTGGCANGGCGCTGAAC 467 consensus_8534#3 GGTGAAGTCAAATGAACTGGTNGNGGTGGG------------------------------ 487 ** ** * * * * *** consensus_8534#0 GCATCGAGATCGCAGCTGATCTCGATGATCTCATCTAGGGAGAGGCGGGACGACACGGAA 542 consensus_8534#1 GCATCGAGATCGCAGCTGATCTCGATGATCTCATCTAGGGAGAGGCGGGACGACACGGAA 543 consensus_8534#2 GCCTCAAAATTCCCACTNATTNCAA-AATTTCNTCTAGGAAAAGGNGGAN--AANCGGAA 524 consensus_8534#3 ------------------------------------------------------------ consensus_8534#0 GGCGCCATGCCGCGATCCTCCAGAATGGGTGCCGCCTCATCCGTGGTGTTGCTGCTGGCA 602 consensus_8534#1 GGCGCCATGCCGCGATCCTCCAGAATGGGTGCCGCCTCATCCGTGGTGTTGCTGCTGGCA 603 consensus_8534#2 GNNCCT----CCCNATCCCCCA-AATGGTTCCCCCNCC----------TTGTNTTTCNCG 569 consensus_8534#3 ------------------------------------------------------------ consensus_8534#0 GAGAGATCATGCTGGGTTCCTCCATTTGGAAGTGAATCAGCTGCCGGTGTCTGATAAAGA 662 consensus_8534#1 GAGAGATCATGCTGGGTTCCTCCATTTGGAAGTGAATCAGCTGCCGGTGTCTGATAAAGA 663 consensus_8534#2 GNAAAAANAAGCNGG---TCCCCATTGGAATAACACGCGGTTTTNAAAANCAACCGANAC 626 consensus_8534#3 ------------------------------------------------------------ consensus_8534#0 TGCTGACTCAGGACATAAGCTTCTGAAAACTCTCCTGTGGAAAGCTTGGCTAGTCTCCAG 722 consensus_8534#1 TGCTGACTCAGGACATAAGCTTCTGAAAACTCTCCTGTGGAAAGCTTGGCTAGTCTCCAG 723 consensus_8534#2 TCNAANNCCTNGAAACNGNNTCCC-----CTTNAATCCGGAAAAAATACCCCCT------ 675 consensus_8534#3 ------------------------------------------------------------ consensus_8534#0 TTGAAAATTCGGCGGAAGATAGTAACCCATCTTGGCACAAGGTGGTACTGCGAGCCACGG 782 consensus_8534#1 TTGAAAATTCGGCGGAAGATAGTAACCCATCTTGGCACAAGGTGGTACTGCGAGCCACGG 783 consensus_8534#2 ------------------------------------------------------------ consensus_8534#3 ------------------------------------------------------------ consensus_8534#0 AGCTCGAGGCCGACACCTTTCTGCACCA 810 consensus_8534#1 AGCTCGAGGCCGACACCTT--------- 802 consensus_8534#2 ---------------------------- consensus_8534#3 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||