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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2057 fasta sequence
[ATTATGCGGTAGGAGCTGAAATCTCTTTGAGAGAAGTATCCATCACATAAGGCAAGTCTCTTACGTAGAGGAGGAGGAAGAGAAGAGAAGAGAAGAAAAGGACGGATGGTTAGCCAGTCCAAGACGCCGGCGCCGGAGCCGTCGACGACGAAGATGCCATCGGCGCCTCCGGCGGTAAAGGGCGTAGCGAAGACGCTGGCGCAGCACCACAAGGCCGTGATCGGGTTCCTGCTTGGCTTCTTCCTGGTCCTGCTGCTCTACACCTTCCTTTCTGGCCAGCTTGTTTCCTCGGAGGATGCCATTGTGAGGGCCGTCACACAACAGTCCACGCCTGCCGTGCATACCGATCAAGACGGCAGGACCACATCTCCGACTTCACCAACGTCCACGTCCAGCAATACGACACAAGATAACTTGGAAGGGAAAAATACTGAGCGGTCTAGCCAGCCAGCTGTGAACGACGAAGCAAGTGACAAGATGGAGGAGGATCTTATCCGGCAAGACATTGATCAAGCTGGAACGAAAAATGGCACAAACCATAAACCCGGTGCACCACGCAAGCCAATATGCGACCTGTTAGATCCCAGGTATGACATCTGTGAGATCTCCGGCGACGCACGGACCATGGGCACCAATCGGACCATACTCTACGTGCCGCCCGTCGGAGAGCGTGGGCTTGCCGACGACAGCCATGAATGGAGCATCCGAGATCAGTCTCGCAAGTACCTGGAGTACATAAACAAGGTGACGGTAAGGTCATTGGATGCCCAGGCAGCGCCGGGATGCACCTCTCGCCACGCCGTCCCGGCCGTGGTGTTCGCCATGAACGGGCTTACCTCGAACCCGTGGCACGACTTCAGCGACGTGCTCATCCCACTCTTCATCACCACCCGCGTCTACGAGGGCGAGGTCCAGTTCCTCGTCTCCGACCTGCAACCGTGGTTCGTCGACAAGTACCGGCTCATCCTCACCAACCTGTCCCGCTACGACATCGTCGACTTCAACCAGGACAGCGACGTCCGGTGCTACCCGAAAATCACCGTAGGACTCCGCAGCCACCGCGACCTCGGGATCGACCCAGCTCGCACTCAGCGGAACTACACAATGCTGGACTTCAGGCTTTACATCCGGGAGGTCTACTCGCTGCCGCCCGCCGGCGTGGACATCCCGTTCAAGGAGTCCAGTATGCAACGGAGGCCGCGGGCCATGCTCATCAA-CCGCGGGCGGACGAGGAAATTCGTCAACTTCCAGGAGATCGCCGCGGCGGTGGTGGCAGCAGGTTTCGAGGTGGTCCCGGTGGAGCCGCGTCGTGACCTGAGCATCGAGGAGTTCTCCCGGGTGGTGGACTCATGTGACGTGCTCATGGGCGCGCACGGGGCCGGACTCACCAACTTCTTCTTCCTCCGCACCAACGCGGTGATGCTGCAGGTGGTGCCGTGGGGCCACATGGAACACCCATCCATGGTGTTCTACGGTGGTCCGGCCAGGGAGATGAGGCTGCGCGACGTCGAGTACAGCATCGCCGCCGAGGAGAGCACGCTCTACGACAAGTACGGCAAGGACCACCCGGCGATCAGGGACCCGGAATCTATACACAAGCAAGGGTGGCAGTTCGGGATGAAGTACTACTGGATTGAGCAGGATATCAAGCTCAACGTCACCAGATTTGCTCCCACGCTGCAGCAGGTGCTTCAAATGCTCAGGGGATAGACCTTACTCCGATCCGATCCTTCCTATACAGGCAGGCTTAGAGATACATCCGTAGAAACAAACAATTTCTTTATTTTTTGACGTTTCGACTTAGCATGCCGTGGCGAATTCGCGCGCCTCCGTTTGTTAGGTTGCACTATCTGGATGTTTACACAAATAAATAGTAGAGTGAACAAAGTATACCATAGTACCATACCATATACTCTATGAAGGAAACTAAAGGAACGCACATCACTATCTGGTGCTGCGTGGTATATGTATGGCCAAATGGCCCGAGGCACGACTCATGGCACGGGGTTTTGGCCCGGCCCAAATACAACAGTTGGCCCCGTACCAGTTCGGCCCTA]
[+] EMBL AK102441 [ATTATGCGGTAGGAGCTGAAATCTCTTTGAGAGAAGTATCCATCACATAAGGCAAGTCTCTTACGTAGAGGAGGAGGAAGAGAAGAGAAGAGAAGAAAAGGACGGATGGTTAGCCAGTCCAAGACGCCGGCGCCGGAGCCGTCGACGACGAAGATGCCATCGGCGCCTCCGGCGGTAAAGGGCGTAGCGAAGACGCTGGCGCAGCACCACAAGGCCGTGATCGGGTTCCTGCTTGGCTTCTTCCTGGTCCTGCTGCTCTACACCTTCCTTTCTGGCCAGCTTGTTTCCTCGGAGGATGCCATTGTGAGGGCCGTCACACAACAGTCCACGCCTGCCGTGCATACCGATCAAGACGGCAGGACCACATCTCCGACTTCACCAACGTCCACGTCCAGCAATACGACACAAGATAACTTGGAAGGGAAAAATACTGAGCGGTCTAGCCAGCCAGCTGTGAACGACGAAGCAAGTGACAAGATGGAGGAGGATCTTATCCGGCAAGACATTGATCAAGCTGGAACGAAAAATGGCACAAACCATAAACCCGGTGCACCACGCAAGCCAATATGCGACCTGTTAGATCCCAGGTATGACATCTGTGAGATCTCCGGCGACGCACGGACCATGGGCACCAATCGGACCATACTCTACGTGCCGCCCGTCGGAGAGCGTGGGCTTGCCGACGACAGCCATGAATGGAGCATCCGAGATCAGTCTCGCAAGTACCTGGAGTACATAAACAAGGTGACGGTAAGGTCATTGGATGCCCAGGCAGCGCCGGGATGCACCTCTCGCCACGCCGTCCCGGCCGTGGTGTTCGCCATGAACGGGCTTACCTCGAACCCGTGGCACGACTTCAGCGACGTGCTCATCCCACTCTTCATCACCACCCGCGTCTACGAGGGCGAGGTCCAGTTCCTCGTCTCCGACCTGCAACCGTGGTTCGTCGACAAGTACCGGCTCATCCTCACCAACCTGTCCCGCTACGACATCGTCGACTTCAACCAGGACAGCGACGTCCGGTGCTACCCGAAAATCACCGTAGGACTCCGCAGCCACCGCGACCTCGGGATCGACCCAGCTCGCACTCAGCGGAACTACACAATGCTGGACTTCAGGCTTTACATCCGGGAGGTCTACTCGCTGCCGCCCGCCGGCGTGGACATCCCGTTCAAGGAGTCCAGTATGCAACGGAGGCCGCGGGCCATGCTCATCAA CCGCGGGCGGACGAGGAAATTCGTCAACTTCCAGGAGATCGCCGCGGCGGTGGTGGCAGCAGGTTTCGAGGTGGTCCCGGTGGAGCCGCGTCGTGACCTGAGCATCGAGGAGTTCTCCCGGGTGGTGGACTCATGTGACGTGCTCATGGGCGCGCACGGGGCCGGACTCACCAACTTCTTCTTCCTCCGCACCAACGCGGTGATGCTGCAGGTGGTGCCGTGGGGCCACATGGAACACCCATCCATGGTGTTCTACGGTGGTCCGGCCAGGGAGATGAGGCTGCGCGACGTCGAGTACAGCATCGCCGCCGAGGAGAGCACGCTCTACGACAAGTACGGCAAGGACCACCCGGCGATCAGGGACCCGGAATCTATACACAAGCAAGGGTGGCAGTTCGGGATGAAGTACTACTGGATTGAGCAGGATATCAAGCTCAACGTCACCAGATTTGCTCCCACGCTGCAGCAGGTGCTTCAAATGCTCAGGGGATAGACCTTACTCCGATCCGATCCTTCCTATACAGGCAGGCTTAGAGATACATCCGTAGAAACAAACAATTTCTTTATTTTTTGACGTTTCGACTTAGCATGCCGTGGCGAATTCGCGCGCCTCCGTTTGTTAGGTTGCACTATCTGGATGTTTACACAAATAAATAGTAGAGTGAACAAAGTATACCATAGTACCATACCATATACTCTATGAAGGAAACTAAAGGAACGCACATCACTATCTGGTGCTGCGTGGTATATGTATGGCCAAATGGCCCGAGGCACGACTCATGGCACGGGGTTTTGGCCCGGCCCAAATACAACAGTTGGCCCCGTACCAGTTCGGCCCTA]
[+] EMBL C72518 [ AACGGAGGCCGCGGGCCATGCTCATCAA CCGCGGGCGGACGAGGAAATTCGTCAACTTCCAGGAGATCGCCGCGGCGGTGGTGGCAGCAGGTTTCGAGGTGGTCCCGGTGGAGCCGCGTCGTGACCTGAGCATCGAGGAGTTCTCCCGGGTGGTGGACTCATGTGACGTGCTCATGGGCGCGCACGGGGCCGGACTCACCAACTTCTTCTTCCTCCGCACCAACGCGGTGATGCTGCAGGTGGTGCCGTGGGGCCACATGGAACACCCATCCATGGTGTTCTACGGTGGTCCGGCCAGGGAGATGAGGCTGCGCGACGTCGAGTACAGCATCGCCGCCGAGGAGAGCACGNTCTACGACAAGTACGGCAAGGACCACCCGGCGATCAGGGACCCGGAATNTATACACAAGCAAGGGTGGNAGTTCGGGATGAAGTACTACTGG ]
[+] EMBL AU083447 [ ATGCTNATCAACCCGCGGGCGGACGAGGAAATTCGTCAANTTCCAGGAGATCCCCGCGNCGTTGTTGGCAGCAGGTTTCGAAGTGGTCCCGGTGGAGCCGCGTCGTGACCTGAGCATCGAGGAGTTCTCCCGGTTGGTGGACTCATGTGACGTGCTCATGGGCGCGCACGGGGCCGGANTCACCAACTTCTTCTTCCTCCGCACCAACGCGGTGATGCTGCAGGTGGTGCCGTGGGGCCACATGGAACACCCATCCATGGTGTTCTACGGTGGTCCGGCCAGGGAGATGAAGNTGCGCGACGTCGAGTACAGCATCGCCGCCGAGGAGAGCACGCTCTACGACAAGTACGGCAAGGACCACCCGGCGATCAGGGACCCGGAATCTATACACAAGCAAGGGTGGCAGTTCGGGATGAAGTACTACTGGATTGAGCAGGATATCAAGCTCAACGTCACCAGATTTGCTCCCACGCTGCAGCAGGTGCTTCAAATGCTCAGGGGATAGACCTTACTCCGATCCGATCCTTCCTATACAGGCAGGCTTAGAGATACATCCGTAGAAACAAACAATTTCTTTATTTTTTGACGTTTCGACTTAGCATGCCGTGGCGAATTCGCGCGCCTCCGTTTGTTAGGTTGCACTATCTGGATGTTTACACAAATAAATAGTAGAGTGAACAAAGTATACCAaaaaaaa ]
[-] EMBL CB639171 [ CGGACTCACCAATTTTTTCTTCCTCCGCACCAACGCGGTGATGCTGCAGGTGGTGCCGTGGGGCCACATGGAACACCCATCCATGGTGTTCTACGGTGGTCCGGCCAGGGAGATGAGGCTGCGCGACGTCGAGTACAGCATCGCCGCCGAGGAGAGCACGCTCTACGACAAGTACGGCAAGGACCACCCGGCGATCAGGGACCCGGAATCTATACACAAGCAAGGGTGGCAGTTCGGGATGAAGTACTACTGGATTGAGCAGGATATCAAGCTCAACGTCACCAGATTTGCTCCCACGCTGCAGCAGGTGCTTCAAATGCTCAGGGGATAGACCTTACTCCGATCCGATCCTTCCTATACAGGCAGGCTTAGAGATACATCCGTAGAAACAAACAATTTCTTTATTTTTTGACGTTTCGACTTAGCATGCCGTGGCGAATTCGCGCGCCTCCGTTTGTTAGGTTGCACTATCTGGATGTTTACACAAATAGATAGT ]
consensusID : consensus_8535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence
[TNATGGGGGGCAGGGCCGGATTCCCAATTTTTTTTCTTCGCANCAAACGCGGGGATGTTCAAGGTGTNCCGTGGGNCAAAATGGAANACCNATCCATGGTTTTTTACGGTGTTCNGGCCAGGGAGATGAGGTTGCGNGANGTNGAGNACAGCATCNCCGCNGAGGAGAGCACGTTTTACGACAAGTACGGCAAGGACCACCCGGCGATCAGGGACCCGGAATTTATANACAAGCAAGGGTGGCAGTTCGGGATGAAGTANTACTGGATTGAGCAGGATATCAAGNTNAANGTCACCAGATTTGCTCCCACGNTGCAGCAGGTGCTTCAAATGCTCAGGGGATAGACCTTACTCCGATCCGATCCTTCCTATACAGGCAGGCTTAGAGATACATCCGTAGAAACAAACAATTTTTTTATTTTTTGACGTTTNGANTTAGCATGCCGTGGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AA753735 [TNATGGGGGGCAGGGCCGGATTCCCAATTTTTTTTCTTCGCANCAAACGCGGGGATGTTCAAGGTGTNCCGTGGGNCAAAATGGAANACCNATCCATGGTTTTTTACGGTGTTCNGGCCAGGGAGATGAGGTTGCGNGANGTNGAGNACAGCATCNCCGCNGAGGAGAGCACGTTTTACGACAAGTACGGCAAGGACCACCCGGCGATCAGGGACCCGGAATTTATANACAAGCAAGGGTGGCAGTTCGGGATGAAGTANTACTGGATTGAGCAGGATATCAAGNTNAANGTCACCAGATTTGCTCCCACGNTGCAGCAGGTGCTTCAAATGCTCAGGGGATAGACCTTACTCCGATCCGATCCTTCCTATACAGGCAGGCTTAGAGATACATCCGTAGAAACAAACAATTTTTTTATTTTTTGACGTTTNGANTTAGCATGCCGTGGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8535#0 ATTATGCGGTAGGAGCTGAAATCTCTTTGAGAGAAGTATCCATCACATAAGGCAAGTCTC 60
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 TTACGTAGAGGAGGAGGAAGAGAAGAGAAGAGAAGAAAAGGACGGATGGTTAGCCAGTCC 120
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 AAGACGCCGGCGCCGGAGCCGTCGACGACGAAGATGCCATCGGCGCCTCCGGCGGTAAAG 180
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 GGCGTAGCGAAGACGCTGGCGCAGCACCACAAGGCCGTGATCGGGTTCCTGCTTGGCTTC 240
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 TTCCTGGTCCTGCTGCTCTACACCTTCCTTTCTGGCCAGCTTGTTTCCTCGGAGGATGCC 300
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 ATTGTGAGGGCCGTCACACAACAGTCCACGCCTGCCGTGCATACCGATCAAGACGGCAGG 360
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 ACCACATCTCCGACTTCACCAACGTCCACGTCCAGCAATACGACACAAGATAACTTGGAA 420
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 GGGAAAAATACTGAGCGGTCTAGCCAGCCAGCTGTGAACGACGAAGCAAGTGACAAGATG 480
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 GAGGAGGATCTTATCCGGCAAGACATTGATCAAGCTGGAACGAAAAATGGCACAAACCAT 540
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 AAACCCGGTGCACCACGCAAGCCAATATGCGACCTGTTAGATCCCAGGTATGACATCTGT 600
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 GAGATCTCCGGCGACGCACGGACCATGGGCACCAATCGGACCATACTCTACGTGCCGCCC 660
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 GTCGGAGAGCGTGGGCTTGCCGACGACAGCCATGAATGGAGCATCCGAGATCAGTCTCGC 720
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 AAGTACCTGGAGTACATAAACAAGGTGACGGTAAGGTCATTGGATGCCCAGGCAGCGCCG 780
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 GGATGCACCTCTCGCCACGCCGTCCCGGCCGTGGTGTTCGCCATGAACGGGCTTACCTCG 840
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 AACCCGTGGCACGACTTCAGCGACGTGCTCATCCCACTCTTCATCACCACCCGCGTCTAC 900
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 GAGGGCGAGGTCCAGTTCCTCGTCTCCGACCTGCAACCGTGGTTCGTCGACAAGTACCGG 960
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 CTCATCCTCACCAACCTGTCCCGCTACGACATCGTCGACTTCAACCAGGACAGCGACGTC 1020
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 CGGTGCTACCCGAAAATCACCGTAGGACTCCGCAGCCACCGCGACCTCGGGATCGACCCA 1080
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 GCTCGCACTCAGCGGAACTACACAATGCTGGACTTCAGGCTTTACATCCGGGAGGTCTAC 1140
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 TCGCTGCCGCCCGCCGGCGTGGACATCCCGTTCAAGGAGTCCAGTATGCAACGGAGGCCG 1200
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 CGGGCCATGCTCATCAACCGCGGGCGGACGAGGAAATTCGTCAACTTCCAGGAGATCGCC 1260
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 GCGGCGGTGGTGGCAGCAGGTTTCGAGGTGGTCCCGGTGGAGCCGCGTCGTGACCTGAGC 1320
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 ATCGAGGAGTTCTCCCGGGTGGTGGACTCATGTGACGTGCTCATGGGCGCGCACGGGGCC 1380
consensus_8535#1 ----------------------------------------TNATGGGGG---GCAGGGCC 17
* ***** * * *****
consensus_8535#0 GGACTCACCAACTTCTTCTTCCTCCGCACCAA-CGCGGTGATGCTGCAGGTGGTGCCGTG 1439
consensus_8535#1 GGATTC-CCAATTTTTTTT--CTTCGCANCAAACGCGGGGATGTTCAAGGTG-TNCCGTG 73
*** ** **** ** ** * ** **** *** ***** **** * ***** * *****
consensus_8535#0 GGGCCACATGGAACACCCATCCATGGTGTTCTACGGTGGTCCGGCCAGGGAGATGAGGCT 1499
consensus_8535#1 GGNCAAAATGGAANACCNATCCATGGTTTTTTACGGTGTTCNGGCCAGGGAGATGAGGTT 133
** * * ****** *** ********* ** ******* ** **************** *
consensus_8535#0 GCGCGACGTCGAGTACAGCATCGCCGCCGAGGAGAGCACGCTCTACGACAAGTACGGCAA 1559
consensus_8535#1 GCGNGANGTNGAGNACAGCATCNCCGCNGAGGAGAGCACGTTTTACGACAAGTACGGCAA 193
*** ** ** *** ******** **** ************ * *****************
consensus_8535#0 GGACCACCCGGCGATCAGGGACCCGGAATCTATACACAAGCAAGGGTGGCAGTTCGGGAT 1619
consensus_8535#1 GGACCACCCGGCGATCAGGGACCCGGAATTTATANACAAGCAAGGGTGGCAGTTCGGGAT 253
***************************** **** *************************
consensus_8535#0 GAAGTACTACTGGATTGAGCAGGATATCAAGCTCAACGTCACCAGATTTGCTCCCACGCT 1679
consensus_8535#1 GAAGTANTACTGGATTGAGCAGGATATCAAGNTNAANGTCACCAGATTTGCTCCCACGNT 313
****** ************************ * ** ********************* *
consensus_8535#0 GCAGCAGGTGCTTCAAATGCTCAGGGGATAGACCTTACTCCGATCCGATCCTTCCTATAC 1739
consensus_8535#1 GCAGCAGGTGCTTCAAATGCTCAGGGGATAGACCTTACTCCGATCCGATCCTTCCTATAC 373
************************************************************
consensus_8535#0 AGGCAGGCTTAGAGATACATCCGTAGAAACAAACAATTTCTTTATTTTTTGACGTTTCGA 1799
consensus_8535#1 AGGCAGGCTTAGAGATACATCCGTAGAAACAAACAATTTTTTTATTTTTTGACGTTTNGA 433
*************************************** ***************** **
consensus_8535#0 CTTAGCATGCCGTGGCGAATTCGCGCGCCTCCGTTTGTTAGGTTGCACTATCTGGATGTT 1859
consensus_8535#1 NTTAGCATGCCGTGGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------ 487
**************** * * * *
consensus_8535#0 TACACAAATAAATAGTAGAGTGAACAAAGTATACCATAGTACCATACCATATACTCTATG 1919
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 AAGGAAACTAAAGGAACGCACATCACTATCTGGTGCTGCGTGGTATATGTATGGCCAAAT 1979
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 GGCCCGAGGCACGACTCATGGCACGGGGTTTTGGCCCGGCCCAAATACAACAGTTGGCCC 2039
consensus_8535#1 ------------------------------------------------------------
consensus_8535#0 CGTACCAGTTCGGCCCTA 2057
consensus_8535#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||