These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1588 fasta sequence [GCTTCGCATCTCGCCTCTGGTGATGAGAGCGGACAGAGCCGAGCTGAGGGAATTAAAACCCCCTTATCCTCTCTCTGCCCCCGGGCTGCCATTGCTGGATCCAACCATCTGCCCCCGCCACGCCTCGTCTCGCGCTAGCCGTCTCGCGTGCGTGCGCGCGCGTCGCGCCGCG-CCCTCGTTTTGGAGCCTTGCGCCCCGCTACTTTCCCCTTGTCCCGAACCCGGAATCCGCCTCGGCGAGCGTCCTTGCTTTGCTTCTTTGGTATCTGTGCTCCCGTTTGCTTTGCCTTGCCACGCTCCTTCCTCCTCCTCATTGTCTCCTCCCGTGGTTCGGCTCATTCTGTTCTTGGGTTGACGCGGGCTGCGTGCGTGCGTGCGTGCGTGCGGAGGCGATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGTGGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTGCGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAAGGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGACAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAACTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCCCGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTTCACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACATCGTCT-CCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATC-AAAGTTGACAGCCACAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGAGGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCTCGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTGGCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAGGGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCAGAAGTGGACA--TTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGTTTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGTGTTAACGCCGTGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTATGTGTTATGTCAGTGTGCGTGTTTGAGCTTCTGTCACTCTGTCAGGGTCCTGTTTCGATCGAACTGCCTGTTTGAGTTCAGAGCAACGCAGCTGCATTTCTTGTAAACACTGGGACTGTATCTGACGCTTCCCTTACAAATTTCCCATTCTGTGTGC] [+] EMBL AK073093 [GCTTCGCATCTCGCCTCTGGTGATGAGAGCGGACAGAGCCGAGCTGAGGGAATTAAAACCCCCTTATCCTCTCTCTGCCCCCGGGCTGCCATTGCTGGATCCAACCATCTGCCCCCGCCACGCCTCGTCTCGCGCTAGCCGTCTCGCGTGCGTGCGCGCGCGTCGCGCCGCG CCCTCGTTTTGGAGCCTTGCGCCCCGCTACTTTCCCCTTGTCCCGAACCCGGAATCCGCCTCGGCGAGCGTCCTTGCTTTGCTTCTTTGGTATCTGTGCTCCCGTTTGCTTTGCCTTGCCACGCTCCTTCCTCCTCCTCATTGTCTCCTCCCGTGGTTCGGCTCATTCTGTTCTTGGGTTGACGCGGGCTGCGTGCGTGCGTGCGTGCGTGCGGAGGCGATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGTGGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTGCGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAAGGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGACAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAACTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCCCGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTTCACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACATCGTCT CCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATC AAAGTTGACAGCCACAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGAGGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCTCGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTGGCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAGGGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCAGAAGTGGACA TTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGTTTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGTGTTAACGCCGTGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTATGTGTTATGTCAGTGTGCGTGTTTGAGCTTCTGTCACTCTGTCAGGGTCCTGTTTCGATCGAACTGCCTGTTTGAGTTCAGAGCAACGCAGCTGCATTTCTTGTAAACACTGGGACTGTATCTGACGCTTCCCTTACAAATTTCCCATTCTGTGTGC] [+] EMBL CA756162 [ CCCCGCCACGCCTCGTCTCGCGCTAGCCGTCTCGCGTGCGTGCGCGCGCGTCGCGCCGCG CCCTCGTTTTGGAGCCTTGCGCCCCGCTACTTTCCCCTTGTCCCGAACCCGGAATCCGCCTCGGCGAGCGTCCTTGCTTTGCTTCTTTGGTATCTGTGCTCCCGTTTGCTTTGCCTTGCCACGCTCCTTCCTCCTCCTCATTGTCTCCTCCCGTGGTTCGGCTCATTCTGTTCTTGGGTTGACGCGGGCTGCGTGCGTGCGTGCGTGCGTGCGGAGGCGATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGTGGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTGCGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAAGGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGACAAGGACGACCAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCG ] [+] EMBL C91780 [ CTCGCGCTA NCGTCTCGCGTGCGTGCGCGCGCGTCG G CGCGNCNCTCGTTTTGGAGCCTTGCGCCCCGCTACTTTCCCCTTGTCCCGAACCCGGAATCCGCCTCGGCGAGCGTCCTTGCTTTGCTTCTTTGGTATCTGTGCTCCCGTTTGCTTTGCCTTGCCACGCTCCTTCCTCCTCCTCATTGTCTCCTCCCGTGGTTCGGCTCATTCTGTTCTTGGGTTGACGCGGGCTGCGTGCGTGCGTGCGTGCGTGCGGAGGCGATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGA GCGACGAAGGANCGGGTGGCGGTGGTGGG AAGAACG ] [+] EMBL AU101439 [ GTTCACTTTTTCCGTCAGCAAAAACATNGTCTCCCGGCTTCCGNTACACAAATGCCGTCTGGAAGACCGGCATCAAAAGTTGACAGCCACAAGGAGATGCTCGGNACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGAGGAGACCACGCCGTCCGGCATNTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCTCGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGANTGGCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAGGGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCAGAAGTGGACATTTTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGTTTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGTGTTAACGCCGTGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTATGTGTTATGTCAGTGTGCGTGTTTGAGCTTCTGTCACTCTGTCAGGGTCCTGTTTCGATCGAACTGCCTGTTTGAGTTCAGAGCAACGCAGCTGCATTTCTTGTAAAaaaa ] consensusID : consensus_8541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1060 fasta sequence [ATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGTGGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTGCGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAAGGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGACAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAACTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCCCGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTTCACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACATCGTCTCCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATCAAAGTTGACAGCCACAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGAGGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCTCGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTGGCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAGGGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCAGAAGTGGACATTTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGTTTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGTGTTAACGCCGCGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AY288198 [ATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGTGGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTGCGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAAGGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGACAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAACTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCCCGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTTCACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACATCGTCTCCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATCAAAGTTGACAGCCACAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGAGGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCTCGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTGGCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAGGGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCAGAAGTGGACATTTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGTTTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGTGTTAACGCCGCGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8541#0 GCTTCGCATCTCGCCTCTGGTGATGAGAGCGGACAGAGCCGAGCTGAGGGAATTAAAACC 60 consensus_8541#1 ------------------------------------------------------------ consensus_8541#0 CCCTTATCCTCTCTCTGCCCCCGGGCTGCCATTGCTGGATCCAACCATCTGCCCCCGCCA 120 consensus_8541#1 ------------------------------------------------------------ consensus_8541#0 CGCCTCGTCTCGCGCTAGCCGTCTCGCGTGCGTGCGCGCGCGTCGCGCCGCGCCCTCGTT 180 consensus_8541#1 ------------------------------------------------------------ consensus_8541#0 TTGGAGCCTTGCGCCCCGCTACTTTCCCCTTGTCCCGAACCCGGAATCCGCCTCGGCGAG 240 consensus_8541#1 ------------------------------------------------------------ consensus_8541#0 CGTCCTTGCTTTGCTTCTTTGGTATCTGTGCTCCCGTTTGCTTTGCCTTGCCACGCTCCT 300 consensus_8541#1 ------------------------------------------------------------ consensus_8541#0 TCCTCCTCCTCATTGTCTCCTCCCGTGGTTCGGCTCATTCTGTTCTTGGGTTGACGCGGG 360 consensus_8541#1 ------------------------------------------------------------ consensus_8541#0 CTGCGTGCGTGCGTGCGTGCGTGCGGAGGCGATGTCGTCGGCGGTGGATGCCATCTCCTG 420 consensus_8541#1 -------------------------------ATGTCGTCGGCGGTGGATGCCATCTCCTG 29 ***************************** consensus_8541#0 TTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGT 480 consensus_8541#1 TTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGT 89 ************************************************************ consensus_8541#0 GGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTG 540 consensus_8541#1 GGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTG 149 ************************************************************ consensus_8541#0 CGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAA 600 consensus_8541#1 CGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAA 209 ************************************************************ consensus_8541#0 GGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGA 660 consensus_8541#1 GGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGA 269 ************************************************************ consensus_8541#0 CAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAA 720 consensus_8541#1 CAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAA 329 ************************************************************ consensus_8541#0 CTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCC 780 consensus_8541#1 CTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCC 389 ************************************************************ consensus_8541#0 CGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTT 840 consensus_8541#1 CGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTT 449 ************************************************************ consensus_8541#0 CACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACAT 900 consensus_8541#1 CACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACAT 509 ************************************************************ consensus_8541#0 CGTCTCCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATCAAAGTTGACAGCCA 960 consensus_8541#1 CGTCTCCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATCAAAGTTGACAGCCA 569 ************************************************************ consensus_8541#0 CAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGA 1020 consensus_8541#1 CAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGA 629 ************************************************************ consensus_8541#0 GGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCT 1080 consensus_8541#1 GGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCT 689 ************************************************************ consensus_8541#0 CGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTG 1140 consensus_8541#1 CGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTG 749 ************************************************************ consensus_8541#0 GCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAG 1200 consensus_8541#1 GCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAG 809 ************************************************************ consensus_8541#0 GGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCA 1260 consensus_8541#1 GGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCA 869 ************************************************************ consensus_8541#0 GAAGTGGACATTTTTTTTT-CGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGT 1319 consensus_8541#1 GAAGTGGACATTTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGT 929 ******************* **************************************** consensus_8541#0 TTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGT 1379 consensus_8541#1 TTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGT 989 ************************************************************ consensus_8541#0 GTTAACGCCGTGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTATGTGTTAT 1439 consensus_8541#1 GTTAACGCCGCGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTAAAAAAAAA 1049 ********** ***************************************** * consensus_8541#0 GTCAGTGTGCGTGTTTGAGCTTCTGTCACTCTGTCAGGGTCCTGTTTCGATCGAACTGCC 1499 consensus_8541#1 AAAAAAAAAAA------------------------------------------------- 1060 * consensus_8541#0 TGTTTGAGTTCAGAGCAACGCAGCTGCATTTCTTGTAAACACTGGGACTGTATCTGACGC 1559 consensus_8541#1 ------------------------------------------------------------ consensus_8541#0 TTCCCTTACAAATTTCCCATTCTGTGTGC 1588 consensus_8541#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||