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Oryza sativa
cluster # 8543 cluster # 8543       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8543#0 length = 807 sequences # 5  

consensusID : consensus_8543#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 807
fasta sequence
                              [ATCCCATCTCAGAGCAGCGTACAAGGACACGGAATCAGCGAAAAGGCACGAGCTCACGATCGAGCTAGATCAAGCTAAGCTAGCAGTAAGATCGGAAGGAGAAATCTAGTCGTTGTTGGTCATAGACAAGG-AAAAAAAAAACAAGCCAGAAACCGATGGGGAACTGCGGGGCGTCGCAGCGTGCCGTGGAGTCGTGGGCCGACGGCGACGAGTGGGAGGACGAGGCGGCGGCGTCGTCATCGTCGGAGGACGATGGCCACCGCGAGCGGATGGAGCACGTGGCAGAGGTGACCATCAGGATCACCAAGAGGCAGCTGCACGAGCTGATGGAGCGCAAGGGCGCCGGGAATGGCCACGGGAAGATCAGCCGGCGGTCCACGCAGCAGCTGCT-GGC-GGACATCATGAACTCCGGCGAGGTGCACCACCAC-GACCAGCACAGGGAGGCGCACT-GGAAGCCCGCCCTGCAGAGCATTCC-GGAGGCCGTGGAGTCATGAGTTCCATTCTACGCCTTAAGCTTGGTGGTTAAGTCGCCGCTTGATTATTTTTCCAAGAAGTTTGTCGCTTTCCTCCATGTTTCTTTTCCATGACCACATTTTCTTTACTCTGCACCAGATTTAATTTCGGTGCTTATTGATGTGCATAGCTAGAATACATTTGGGTTAATTCATCAATTGTTCAGACAGGACATGTACAAAAATCCGCGCGCTCAAAAAGAAGTCGAAGAATATGTAAATAAATGTAGGGGAAATCATTGTAAAGATATTTTACAATTGTATAAAGAAGGCTAATTTGAGGAAAAAAAAAAAA]

[+] EMBL AK111091             [ATCCCATCTCAGAGCAGCGTACAAGGACACGGAATCAGCGAAAAGGCACGAGCTCACGATCGAGCTAGATCAAGCTAAGCTAGCAGTAAGATCGGAAGGAGAAATCTAGTCGTTGTTGGTCATAGACAAGGAAAAAAAAAAACAAGCCAGAAACCGATGGGGAACTGCGGGGCGTCGCAGCGTGCCGTGGAGTCGTGGGCCGACGGCGACGAGTGGGAGGACGAGGCGGCGGCGTCGTCATCGTCGGAGGACGATGGCCACCGCGAGCGGATGGAGCACGTGGCAGAGGTGACCATCAGGATCACCAAGAGGCAGCTGCACGAGCTGATGGAGCGCAAGGGCGCCGGGAATGGCCACGGGAAGATCAGCCGGCGGTCCACGCAGCAGCTGCT GGC GGACATCATGAACTCCGGCGAGGTGCACCACCAC GACCAGCACAGGGAGGCGCACT GGAAGCCCGCCCTGCAGAGCATTCC GGAGGCCGTGGAGTCATGAGTTCCATTCTACGCCTTAAGCTTGGTGGTTAAGTCGCCGCTTGATTATTTTTCCAAGAAGTTTGTCGCTTTCCTCCATGTTTCTTTTCCATGACCACATTTTCTTTACTCTG                                                                                                                                                                                                         ]
[+] EMBL AU101579             [                                  TCAGCGAAAAGGCACGAGCTCACGATCGAGCTAGATCAAGCTAAGCTAGCAGTAAGATCGGAAGGAGAAATCTAGTCGTTGTTGGTCATAGACAAGG AAAAAAAAAACAAGCCAGAAACCGATGGGGAACTGCGGGGCGTCGCAGCGTGCCGTGGAGTCGTGGGCCGACGGCGACGAGTGGGAGGACGAGGCGGCGGCGTCGTCATCGTCGGAGGACGATGGCCACCGCGAGCGGATGGAGCACGTGGCAGAGGTGACCATCAGGATCACCAAGAGGCAGCTGCACGAGCTGATGGAGCGCAAGGGCGCCGGGAATGGCCACGGGAAGATCAGCCGGCGGTCCACGCAGCAGCTGCTGGGC GGACATCATGAACTCCGGCGAGGTGCACCACCAC GACCAGCACAGGGAGGCGCACTGGGAAGCCCGCCCTGCAGAGCATTCCGGGAGGCCGTGGAGTCATGAGTTCCATTCTANGCCTTAAGCTTGGTGGTTAAGTCGCCGCTTGATTATTTTTCCAAGAAGTTTGTCGCTTTCCTCCATGTTTCTTTTCCATGACCAC                                                                                                                                                                                                                        ]
[+] EMBL AU164968             [                                  TCAGCGAAAAGGCACGAGCTCACGATCGAGCTAGATCAAGCTAAGCTAGCAGTAAGATCGGAAGGAGAAATCTAGTCGTTGTTGGTCATAGACAAGG AAAAAAAAAACAAGCCAGAAACCGATGGGGAACTGCGGGGCGTCGCAGCGTGCCGTGGAGTCGTGGGCCGACGGCGACGAGTGGGAGGACGAGGCGGCGGCGTCGTCATCGTCGGAGGACGATGGCCACCGCGAGCGGATGGAGCACGTGGCAGAGGTGACCATCAGGATCACCAAGAGGCAGCTGCACGAGCTGATGGAGCGCAAGGGCGCCGGGAATGGCCACGGGAAGATCAGCCGGCGGTCCACGCAGCAGCTGCT GGCGGGACATCATGAACTCCGGCGAGGTGCACCACCACGGACCAGCACAGGGAGGCGCACT                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU101580             [                                                                                                                                                                                                                                                                                                                                                                       GAAGATCAGCCGGCGGTCCACGCAGCAGCTGCT GGC GGACATCATGAACTCCGGCGAGGTGCACCACCAC GACCAGCACAGGGAGGCGCANT GGAAGCCCNCCCTGCAGAGCATTCC GGAGNCCGTGGAGTCATGAGTNCCATTCTACGCCTTAAGCTTGGTGGTTAAGTCNCCGCTTGATTATTTTTCCAAGAAGTTTGTCGCTTTCCTCCATGTTTCTTTTCCATGACCACATTTTCTTTACTCTGCACCAGATTTAATTTCGGTGCTTATTGATGTGCATAGCTAGAATACATTTGGGTTAATTCATCAATTGTTCAGACAGGACATGTACAAAAATCCGCGCGCTCAAAAAGAAGTCGAAGAATATGTAAATAAATGTAGGGGAAATCATTGTAAAGATATTTTACAATTGTATAAAGAAGGCTAATTTGAGGAAAAAAAAAAAA]
[+] EMBL AU031585             [                                                                                                                                                                                                                                                                                                                                                                                                              gcCATCATGAACTCCGGCGAGGTGCACCACCAC GACCAGCACAGGGAGGCGCACT GGAANCCCGCCCTGCAGAGCATTCC GGAGNCCGTGGAGTCATGAGTTCCATTCTACNCCTTAAGCTTGGTGGTTAAGTCNCCGCTTGATTATTTTTCCAAGAAGTTTGTCGCTTTCCTCCATGTTTCTTTTCCATGACCACATTTTCTTTACTCTGCACCAGATTTAATTTCGGTGCTTATTGATGTGCATAGCTAGAATACATTTGGGTTAATTCATCAATTGTTCAGACAGGACATGTACAAAAATCCGCGCGCTCAAAAAGAAGTCGAAGAATATGTAAATAAATGTAGGGGAAATCATTGTAAAGATATTTTACAATTGTATAAAGAAGGCTAATTTGAGGAAAAAAAAAAAA]


>consensus_8543#0 ATCCCATCTCAGAGCAGCGTACAAGGACACGGAATCAGCGAAAAGGCACGAGCTCACGAT CGAGCTAGATCAAGCTAAGCTAGCAGTAAGATCGGAAGGAGAAATCTAGTCGTTGTTGGT CATAGACAAGGAAAAAAAAAACAAGCCAGAAACCGATGGGGAACTGCGGGGCGTCGCAGC GTGCCGTGGAGTCGTGGGCCGACGGCGACGAGTGGGAGGACGAGGCGGCGGCGTCGTCAT CGTCGGAGGACGATGGCCACCGCGAGCGGATGGAGCACGTGGCAGAGGTGACCATCAGGA TCACCAAGAGGCAGCTGCACGAGCTGATGGAGCGCAAGGGCGCCGGGAATGGCCACGGGA AGATCAGCCGGCGGTCCACGCAGCAGCTGCTGGCGGACATCATGAACTCCGGCGAGGTGC ACCACCACGACCAGCACAGGGAGGCGCACTGGAAGCCCGCCCTGCAGAGCATTCCGGAGG CCGTGGAGTCATGAGTTCCATTCTACGCCTTAAGCTTGGTGGTTAAGTCGCCGCTTGATT ATTTTTCCAAGAAGTTTGTCGCTTTCCTCCATGTTTCTTTTCCATGACCACATTTTCTTT ACTCTGCACCAGATTTAATTTCGGTGCTTATTGATGTGCATAGCTAGAATACATTTGGGT TAATTCATCAATTGTTCAGACAGGACATGTACAAAAATCCGCGCGCTCAAAAAGAAGTCG AAGAATATGTAAATAAATGTAGGGGAAATCATTGTAAAGATATTTTACAATTGTATAAAG AAGGCTAATTTGAGGAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)