Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8544 cluster # 8544       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8544#0 length = 2310 sequences # 4  
consensus_8544#1 length = 803 sequences # 1  

consensusID : consensus_8544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2310
fasta sequence
                              [CGCCGCCGCCGCCTCCTCCTCCGCTCCGCGCGGCCGTCTCCCACCTCTCGCGCCTCACCTCCTCCTCCTCCTAAACCCTCGCTAAACCCTAGCCTCCCACCCCCCCACCCCACCGGGGAGCATGCACTCCAGGCTCCTCAGCGCCCCCTCCCACGCCTCCGCCGCCTCCTCCTCCCCCCTCCCCTTCGCCGCCGCCCACCCTTGCCGCGCCTCCTGGACGCCGCGGCCCACCTCCCCGCTGCCGCCTCTATCGCTGCTGCGCGCCACCGCCTCCATGCATCCTTCTCCTCCTCCCGAGGGGCATAGCGACCAGCCTGTGCATGGCGTCACCAACACGGTCGTCGGCGTGCTGGGGGGAGGCCAGCTGGGGAAGATGCTGTGCCAGGCGGCCAGCCAGATGGGGGTCAGGATGGCCATACTTGATCCCCTCGAGGACTGCCCGGCGAGCTCGGTTTGCCACGAGCATGTCGTCGGGAGCTTCAATGATGGCGCCACGGTTAGCGAGTTCGCAAAGAGGTGCGGGGTTTTGACGGTGGAAATTGAGCATGTCGACGCTGTAACACTCGAGAAGCTTGAGAAACAGGGCATCGATTGTGAGCCCAAAGCCTCCACCATCATGATTATTCAAGACAAGTACAGGCAGAAAACTCATTTCTCAAAATTTGGAATTCCGTTACCTGACTTTGTGGAAGTAGATACTTTAAGTAGCATAGAGAAAGCTGGGGAAATGTTTGGTTATCCTCTAATGGTCAAAAGCAAGAGATTAGCATATGATGGCCGTGGAAATGCTGTTGCTCACGACAAAAAAGAGCTATCTTCTGTTGTTGCTTCTCTTGGTGGGTTTGAGCATGGCTTGTATGTTGAGAGGTGGACATCTTTTGTAAAGGAGCTTTCTGTCATTGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAAGGATAACATCTGCCATGTTGTTGAGGCTCCTGCCGAGGTGCCTGATAAAATAAAGAAGTTGGCTACTAATGTAGCTGAAAAGGCTATCAAATCATTGGAAGGTGCTGGTGTTTTCGCTGTAGAATTATTTTTAACACAAGATAATCAGGTTTTATTGAATGAAGTAGCTCCAAGGCCTCACAACAGTGGGCATCACACAATTGAGTCATGTTATACCTCGCAATATGAGCAACATTTACGTGCTATTCTTGGCCTTCCTCTTGGTGATCCTTCAATGAAAGCGCCTGCATCAATAATGTACAACATCCTGGGTGAGGATGAGGGTGAGGCAGGATTTACTCAAGCTCATCAGTTGATTGAGAGAGCTTTGGACATTTCAGGTGCATCTGTCCATTGGTATGCAAAACCAGAAATACGGAAGCAGAGAAAGATGGGCCATATTACAATTGTGGGGCCTTCAAAGTACAGTGTAAAAGCACGCTTAGATAAGTTGCTGCAAAGAGACGCATATGACCCCAAGAAAGTTGCAGTTAAACCTCGTGCTGCAATAATAATGGGTTCTGATTCTGATCTTCCTGTCATGAAAGATGCTGCAGTAGTATTGAAGAAATTCAACATACCTTTTGAGCTTACAATTGTTTCGGCTCATCGTACACCAGAGAGGATGTACCATTATGCATTATCTACTAAAGAAAGAGGCTTAGAGGTCATAATTGCAGGTGCAGGTGGAGCGGCTCACTTACCAGGGATGGTGGCTTCATTGACTTCTGTCCCAGTAATAGGAGTACCCATCATGACTTCATCTTTACATGGAACTGATTCCCTCCTATCTATTGTCCAGATGCCGAAAGGTATTCCTGTTGCTACTGTTGCAATTGGAAATGCGGAAAATGCAGGTTTATTGGCAGTTAGGATGCT-GGCCTCAAGAGATCCTGAGTTGGGGGACAAGGCAACTGAATACC-AGCATGATCTGAGGGATATGGTGTTGGAGAAAGCAAAAAGGCTCGAGGAACTAGGTTGGGAGGGATATACCGAGCTATACTTGAAGAAGCATTGATCTCTGCTGCCCGTTTAATTGACATTCTTTTTGATCCAGTGTTGACATAAGCAGATATGGTCCATGTGGAGGCCTGGAGAGGGCGTGCCGACTTACGAAGTGAAAGATGTCGACGAAACACGGCGCATGAGCATCTCAGTAGCAGAAAGCTTTGCTTGTATAACTGTAAC-AACATGCCTGCCTGAAATGTTCATGTGGATCTTATGATGATATTTCAGGGAAAAAAAATCAACCAATTTTAAAGAGTTATGAAAAAAAAAGAATTGAGTCCCTAAAGTATCAAAAAAAAAAAA]

[+] EMBL AK068172             [CGCCGCCGCCGCCTCCTCCTCCGCTCCGCGCGGCCGTCTCCCACCTCTCGCGCCTCACCTCCTCCTCCTCCTAAACCCTCGCTAAACCCTAGCCTCCCACCCCCCCACCCCACCGGGGAGCATGCACTCCAGGCTCCTCAGCGCCCCCTCCCACGCCTCCGCCGCCTCCTCCTCCCCCCTCCCCTTCGCCGCCGCCCACCCTTGCCGCGCCTCCTGGACGCCGCGGCCCACCTCCCCGCTGCCGCCTCTATCGCTGCTGCGCGCCACCGCCTCCATGCATCCTTCTCCTCCTCCCGAGGGGCATAGCGACCAGCCTGTGCATGGCGTCACCAACACGGTCGTCGGCGTGCTGGGGGGAGGCCAGCTGGGGAAGATGCTGTGCCAGGCGGCCAGCCAGATGGGGGTCAGGATGGCCATACTTGATCCCCTCGAGGACTGCCCGGCGAGCTCGGTTTGCCACGAGCATGTCGTCGGGAGCTTCAATGATGGCGCCACGGTTAGCGAGTTCGCAAAGAGGTGCGGGGTTTTGACGGTGGAAATTGAGCATGTCGACGCTGTAACACTCGAGAAGCTTGAGAAACAGGGCATCGATTGTGAGCCCAAAGCCTCCACCATCATGATTATTCAAGACAAGTACAGGCAGAAAACTCATTTCTCAAAATTTGGAATTCCGTTACCTGACTTTGTGGAAGTAGATACTTTAAGTAGCATAGAGAAAGCTGGGGAAATGTTTGGTTATCCTCTAATGGTCAAAAGCAAGAGATTAGCATATGATGGCCGTGGAAATGCTGTTGCTCACGACAAAAAAGAGCTATCTTCTGTTGTTGCTTCTCTTGGTGGGTTTGAGCATGGCTTGTATGTTGAGAGGTGGACATCTTTTGTAAAGGAGCTTTCTGTCATTGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAAGGATAACATCTGCCATGTTGTTGAGGCTCCTGCCGAGGTGCCTGATAAAATAAAGAAGTTGGCTACTAATGTAGCTGAAAAGGCTATCAAATCATTGGAAGGTGCTGGTGTTTTCGCTGTAGAATTATTTTTAACACAAGATAATCAGGTTTTATTGAATGAAGTAGCTCCAAGGCCTCACAACAGTGGGCATCACACAATTGAGTCATGTTATACCTCGCAATATGAGCAACATTTACGTGCTATTCTTGGCCTTCCTCTTGGTGATCCTTCAATGAAAGCGCCTGCATCAATAATGTACAACATCCTGGGTGAGGATGAGGGTGAGGCAGGATTTACTCAAGCTCATCAGTTGATTGAGAGAGCTTTGGACATTTCAGGTGCATCTGTCCATTGGTATGCAAAACCAGAAATACGGAAGCAGAGAAAGATGGGCCATATTACAATTGTGGGGCCTTCAAAGTACAGTGTAAAAGCACGCTTAGATAAGTTGCTGCAAAGAGACGCATATGACCCCAAGAAAGTTGCAGTTAAACCTCGTGCTGCAATAATAATGGGTTCTGATTCTGATCTTCCTGTCATGAAAGATGCTGCAGTAGTATTGAAGAAATTCAACATACCTTTTGAGCTTACAATTGTTTCGGCTCATCGTACACCAGAGAGGATGTACCATTATGCATTATCTACTAAAGAAAGAGGCTTAGAGGTCATAATTGCAGGTGCAGGTGGAGCGGCTCACTTACCAGGGATGGTGGCTTCATTGACTTCTGTCCCAGTAATAGGAGTACCCATCATGACTTCATCTTTACATGGAACTGATTCCCTCCTATCTATTGTCCAGATGCCGAAAGGTATTCCTGTTGCTACTGTTGCAATTGGAAATGCGGAAAATGCAGGTTTATTGGCAGTTAGGATGCT GGCCTCAAGAGATCCTGAGTTGGGGGACAAGGCAACTGAATACC AGCATGATCTGAGGGATATGGTGTTGGAGAAAGCAAAAAGGCTCGAGGAACTAGGTTGGGAGGAATATACCGAGCTATACTTGAAGAAGCATTGATCTCTGCTGCCCGTTTAATTGACATTCTTTTTGATCCAGTGTTGACATAAGCAGATATGGTCCATGTGGAGGCCTGGAGAGGGCGTGCCGACTTACGAAGTGAAAGATGTCGACGAAACACGGCGCATGAGCATCTCAGTAGCAGAAAGCTTTGCTTGTATAACTGTAAC AACATGCCTGCCTGAAATGTTCATGTGGATCTTATGATGATATTTCAGGG AAAAAAATCAACCAATTTTA                                                    ]
[+] EMBL CB653540             [                                                                                                                                                                            TCCCCCCTCCCCTTCGCCGCCGCCCACCCTTGCCGCGCCTCCTGGACGCCGCGGCCCAGCTCCCCGCTGCCGCCTCTATCGCTGCTGCGCGCCACCGCCTCCATGCATCCTTCTCCTCCTCGCGAGGGGCATAGCGACCAGCCTGTGCATGGCGTCACCAACACCGTCGTCGGCGTGCTGGGGGGAGGCCCCCTGGGGAAGATGCTGTGCCCCGCGGCCAGCCAGATGGGGGGCAGGATGGCCATACTTGATCCCCTCGAGGACTGCCCGGCGAGCTCGGTTTGCCACGAGCATGTCGTCCGGAGCTTCAATGATGGCGCCACGGATAGCGAGTTCGCAAAGAGGTGCGGGGTTTTGACGGTGGAAATTGAGCATGTCGACGCTGTAACACTCGAGAAGCTTGAGAAACAGGGCATCGATTGTGAGCCCAAAGCCTCCACCATCATGATTATTCAAGACAAGTACAGGCAGAAAACTCATTTCTCAAAATTTGGAATTCCGTTACCTGACTTTGTGGAAGTAGATACTTTAAGTAGCATAGAGAAAGCTGGGGAAATGTTTGGTTATCCTCTAATGGTCAAAAGCAAGAGATTACCATATGATGGCCGTGGAAATGCTGTTGCTCACGACAAAAAAGAGCTATCTTCTGTTGTTGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CA763034             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGGATGTACCATTATGCATTATCTGCTAAAGAAAGAGGCTTAGAGGTTATAATTGCAGGTGCAGGTGGAGCGGCTCACTTACCAGGGATGGTGGCTTCATTGACTTCTGTCCCAGTAATAGGAGTACCCATCATGACCTCATCTTTACATGGAACTGATTCCCTCCTATCTATTGTCCAGATGCCGAAAGGTATTCCTGTTGCTACTGTTGCAATTGGAAATGCGGAAAATGCAGGTTTATTGGCAGTTAGGATGCT GGCCTCAAGAGATCCTGAGTTGGGGGACAAGGCAACTGAATACC AGCATGATTTGAGGGATATGGTGTTGGAGAAAGCAAAAAGGCTCGAGGAACTAGGTTGGGAGGGATATACCGAGCTATACTTGAAGAAGCATTGATCTTTGCTGCCCGTTTAATTGACATTCTTTTTGATCCAGTGTTGACATAAGCAGATATGGTCCATGTGGAGGCCTGGAGAGGGCGTGCCGACTCACGAAGTGAAAGATGTCGACGAAACACGGCGCATGAGCATTTCAGTAGCAGAAAGCTTTGCTTGTATAACTGTAAC AACATGCCTGCCTGAAATGTTCATGTGGATCTTATGATGATATTTCAGGGAAAAAAAATCAACCAATTTTAAAGAGTTATGAAAAAAAAAGAATTGAGTCCCTAAAGTATCAAAAAAAAAAAA]
[+] EMBL BI808285             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aGATGCTGGGCCTCAAGAGATCCTGA TTTGGGGACAAGCCAACTGAATACCAAGCATGATCTGAGGAATATGTTTTTGGAGAAAGCAAAAAGGCTCGAGGAACTAGTTTGGGAGGGATATACCGAGCTATACTTGAAGAAGCATTGATCTCTGCTGCCCGTTTAATTGACATTCTTTTGGATCCAGTGTTGACATAAGCAGATATGGTCCATGTGGAGGCCTGGAGAGGGCGT CCGACTTACGAAGTGAAAGATGTCGACGAAACACGGCGCATGAGCATCTCAGTA CAGAAAGCTTTGCTTGTATAACTGTAACAAACATGCCTGCCTGAAATGTTCATGTGGATCTTATGATGATATTTCAGGGAAAAAAAATCAACCAATTTTAAAGAGTTATGAAAAAAAAAGAATTGAGTCCCTAAAaa               ]


>consensus_8544#0 CGCCGCCGCCGCCTCCTCCTCCGCTCCGCGCGGCCGTCTCCCACCTCTCGCGCCTCACCT CCTCCTCCTCCTAAACCCTCGCTAAACCCTAGCCTCCCACCCCCCCACCCCACCGGGGAG CATGCACTCCAGGCTCCTCAGCGCCCCCTCCCACGCCTCCGCCGCCTCCTCCTCCCCCCT CCCCTTCGCCGCCGCCCACCCTTGCCGCGCCTCCTGGACGCCGCGGCCCACCTCCCCGCT GCCGCCTCTATCGCTGCTGCGCGCCACCGCCTCCATGCATCCTTCTCCTCCTCCCGAGGG GCATAGCGACCAGCCTGTGCATGGCGTCACCAACACGGTCGTCGGCGTGCTGGGGGGAGG CCAGCTGGGGAAGATGCTGTGCCAGGCGGCCAGCCAGATGGGGGTCAGGATGGCCATACT TGATCCCCTCGAGGACTGCCCGGCGAGCTCGGTTTGCCACGAGCATGTCGTCGGGAGCTT CAATGATGGCGCCACGGTTAGCGAGTTCGCAAAGAGGTGCGGGGTTTTGACGGTGGAAAT TGAGCATGTCGACGCTGTAACACTCGAGAAGCTTGAGAAACAGGGCATCGATTGTGAGCC CAAAGCCTCCACCATCATGATTATTCAAGACAAGTACAGGCAGAAAACTCATTTCTCAAA ATTTGGAATTCCGTTACCTGACTTTGTGGAAGTAGATACTTTAAGTAGCATAGAGAAAGC TGGGGAAATGTTTGGTTATCCTCTAATGGTCAAAAGCAAGAGATTAGCATATGATGGCCG TGGAAATGCTGTTGCTCACGACAAAAAAGAGCTATCTTCTGTTGTTGCTTCTCTTGGTGG GTTTGAGCATGGCTTGTATGTTGAGAGGTGGACATCTTTTGTAAAGGAGCTTTCTGTCAT TGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAA GGATAACATCTGCCATGTTGTTGAGGCTCCTGCCGAGGTGCCTGATAAAATAAAGAAGTT GGCTACTAATGTAGCTGAAAAGGCTATCAAATCATTGGAAGGTGCTGGTGTTTTCGCTGT AGAATTATTTTTAACACAAGATAATCAGGTTTTATTGAATGAAGTAGCTCCAAGGCCTCA CAACAGTGGGCATCACACAATTGAGTCATGTTATACCTCGCAATATGAGCAACATTTACG TGCTATTCTTGGCCTTCCTCTTGGTGATCCTTCAATGAAAGCGCCTGCATCAATAATGTA CAACATCCTGGGTGAGGATGAGGGTGAGGCAGGATTTACTCAAGCTCATCAGTTGATTGA GAGAGCTTTGGACATTTCAGGTGCATCTGTCCATTGGTATGCAAAACCAGAAATACGGAA GCAGAGAAAGATGGGCCATATTACAATTGTGGGGCCTTCAAAGTACAGTGTAAAAGCACG CTTAGATAAGTTGCTGCAAAGAGACGCATATGACCCCAAGAAAGTTGCAGTTAAACCTCG TGCTGCAATAATAATGGGTTCTGATTCTGATCTTCCTGTCATGAAAGATGCTGCAGTAGT ATTGAAGAAATTCAACATACCTTTTGAGCTTACAATTGTTTCGGCTCATCGTACACCAGA GAGGATGTACCATTATGCATTATCTACTAAAGAAAGAGGCTTAGAGGTCATAATTGCAGG TGCAGGTGGAGCGGCTCACTTACCAGGGATGGTGGCTTCATTGACTTCTGTCCCAGTAAT AGGAGTACCCATCATGACTTCATCTTTACATGGAACTGATTCCCTCCTATCTATTGTCCA GATGCCGAAAGGTATTCCTGTTGCTACTGTTGCAATTGGAAATGCGGAAAATGCAGGTTT ATTGGCAGTTAGGATGCTGGCCTCAAGAGATCCTGAGTTGGGGGACAAGGCAACTGAATA CCAGCATGATCTGAGGGATATGGTGTTGGAGAAAGCAAAAAGGCTCGAGGAACTAGGTTG GGAGGGATATACCGAGCTATACTTGAAGAAGCATTGATCTCTGCTGCCCGTTTAATTGAC ATTCTTTTTGATCCAGTGTTGACATAAGCAGATATGGTCCATGTGGAGGCCTGGAGAGGG CGTGCCGACTTACGAAGTGAAAGATGTCGACGAAACACGGCGCATGAGCATCTCAGTAGC AGAAAGCTTTGCTTGTATAACTGTAACAACATGCCTGCCTGAAATGTTCATGTGGATCTT ATGATGATATTTCAGGGAAAAAAAATCAACCAATTTTAAAGAGTTATGAAAAAAAAAGAA TTGAGTCCCTAAAGTATCAAAAAAAAAAAA



consensusID : consensus_8544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 803
fasta sequence
                              [ATGCTGCAGTAGTATTGAAGAAATTCAACATACCTTTTGAGCTTACAATTGTTTCGGCTCATCGTACACCAGAGAGGATGTACCATTATGCATTATCTACTAAAGAAAGAGGCTTAGAGGTCATAATTGCAGGTGCAGGTGGAGCGGCTCACTTACCAGGCAAGTGTGACAGAAAAAACACATGCATGAATGCATCATAATACTTCATATTAGTTCAAGACCAAATTATGTGCATACTGGTACACTTGTGTTTTGTCTAGATTATGGTACTTGGACTCATTTCATTTCGAGCATCAATTCTTGCTGTATTTTTCTTCCAAACTGAGTAATAAGGAATGCTATATAACTGGATCATTTCATTGTGTTCTATTGTAGCAAGTAGCAAGTGCTAGTTTCACCCTGTGCTTGAGTTGCTGAAATGGATGCAACACACGTTTGGATAATGGGTTCGATGTTGGAAATGTAGACCAAACGCTTATTTTATAAAGAAAATTATTCACAATCCATCTTGATTAATGAATGATAATATATAAAAAAAACTATTTTTGGTTCAGGGATGGTGGCTTCATTGACTTCTGTCCCAGTAATAGGAGTACCCATCATGACTTCATCTTTACATGGAACTGATTCCCTCCTATCTATTGTCCAGATGCCGAAAGGTATTCCTGTTGCTACTGTTGCAATTGGAAATGCGGAAAATGCAGGTTTATTGGCAGTTAGGATGCTGGCCTCAAGAGATCCTGAGTTGGGGGACAAGGCAACTGAATACCAGCATGATCTGAGGGATATGGTGTTGGAGAGAG]

[-] EMBL CB653541             [ATGCTGCAGTAGTATTGAAGAAATTCAACATACCTTTTGAGCTTACAATTGTTTCGGCTCATCGTACACCAGAGAGGATGTACCATTATGCATTATCTACTAAAGAAAGAGGCTTAGAGGTCATAATTGCAGGTGCAGGTGGAGCGGCTCACTTACCAGGCAAGTGTGACAGAAAAAACACATGCATGAATGCATCATAATACTTCATATTAGTTCAAGACCAAATTATGTGCATACTGGTACACTTGTGTTTTGTCTAGATTATGGTACTTGGACTCATTTCATTTCGAGCATCAATTCTTGCTGTATTTTTCTTCCAAACTGAGTAATAAGGAATGCTATATAACTGGATCATTTCATTGTGTTCTATTGTAGCAAGTAGCAAGTGCTAGTTTCACCCTGTGCTTGAGTTGCTGAAATGGATGCAACACACGTTTGGATAATGGGTTCGATGTTGGAAATGTAGACCAAACGCTTATTTTATAAAGAAAATTATTCACAATCCATCTTGATTAATGAATGATAATATATAAAAAAAACTATTTTTGGTTCAGGGATGGTGGCTTCATTGACTTCTGTCCCAGTAATAGGAGTACCCATCATGACTTCATCTTTACATGGAACTGATTCCCTCCTATCTATTGTCCAGATGCCGAAAGGTATTCCTGTTGCTACTGTTGCAATTGGAAATGCGGAAAATGCAGGTTTATTGGCAGTTAGGATGCTGGCCTCAAGAGATCCTGAGTTGGGGGACAAGGCAACTGAATACCAGCATGATCTGAGGGATATGGTGTTGGAGAGAG]


>consensus_8544#1 ATGCTGCAGTAGTATTGAAGAAATTCAACATACCTTTTGAGCTTACAATTGTTTCGGCTC ATCGTACACCAGAGAGGATGTACCATTATGCATTATCTACTAAAGAAAGAGGCTTAGAGG TCATAATTGCAGGTGCAGGTGGAGCGGCTCACTTACCAGGCAAGTGTGACAGAAAAAACA CATGCATGAATGCATCATAATACTTCATATTAGTTCAAGACCAAATTATGTGCATACTGG TACACTTGTGTTTTGTCTAGATTATGGTACTTGGACTCATTTCATTTCGAGCATCAATTC TTGCTGTATTTTTCTTCCAAACTGAGTAATAAGGAATGCTATATAACTGGATCATTTCAT TGTGTTCTATTGTAGCAAGTAGCAAGTGCTAGTTTCACCCTGTGCTTGAGTTGCTGAAAT GGATGCAACACACGTTTGGATAATGGGTTCGATGTTGGAAATGTAGACCAAACGCTTATT TTATAAAGAAAATTATTCACAATCCATCTTGATTAATGAATGATAATATATAAAAAAAAC TATTTTTGGTTCAGGGATGGTGGCTTCATTGACTTCTGTCCCAGTAATAGGAGTACCCAT CATGACTTCATCTTTACATGGAACTGATTCCCTCCTATCTATTGTCCAGATGCCGAAAGG TATTCCTGTTGCTACTGTTGCAATTGGAAATGCGGAAAATGCAGGTTTATTGGCAGTTAG GATGCTGGCCTCAAGAGATCCTGAGTTGGGGGACAAGGCAACTGAATACCAGCATGATCT GAGGGATATGGTGTTGGAGAGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8544#0      CGCCGCCGCCGCCTCCTCCTCCGCTCCGCGCGGCCGTCTCCCACCTCTCGCGCCTCACCT 60
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      CCTCCTCCTCCTAAACCCTCGCTAAACCCTAGCCTCCCACCCCCCCACCCCACCGGGGAG 120
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      CATGCACTCCAGGCTCCTCAGCGCCCCCTCCCACGCCTCCGCCGCCTCCTCCTCCCCCCT 180
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      CCCCTTCGCCGCCGCCCACCCTTGCCGCGCCTCCTGGACGCCGCGGCCCACCTCCCCGCT 240
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      GCCGCCTCTATCGCTGCTGCGCGCCACCGCCTCCATGCATCCTTCTCCTCCTCCCGAGGG 300
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      GCATAGCGACCAGCCTGTGCATGGCGTCACCAACACGGTCGTCGGCGTGCTGGGGGGAGG 360
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      CCAGCTGGGGAAGATGCTGTGCCAGGCGGCCAGCCAGATGGGGGTCAGGATGGCCATACT 420
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      TGATCCCCTCGAGGACTGCCCGGCGAGCTCGGTTTGCCACGAGCATGTCGTCGGGAGCTT 480
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      CAATGATGGCGCCACGGTTAGCGAGTTCGCAAAGAGGTGCGGGGTTTTGACGGTGGAAAT 540
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      TGAGCATGTCGACGCTGTAACACTCGAGAAGCTTGAGAAACAGGGCATCGATTGTGAGCC 600
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      CAAAGCCTCCACCATCATGATTATTCAAGACAAGTACAGGCAGAAAACTCATTTCTCAAA 660
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      ATTTGGAATTCCGTTACCTGACTTTGTGGAAGTAGATACTTTAAGTAGCATAGAGAAAGC 720
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      TGGGGAAATGTTTGGTTATCCTCTAATGGTCAAAAGCAAGAGATTAGCATATGATGGCCG 780
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      TGGAAATGCTGTTGCTCACGACAAAAAAGAGCTATCTTCTGTTGTTGCTTCTCTTGGTGG 840
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      GTTTGAGCATGGCTTGTATGTTGAGAGGTGGACATCTTTTGTAAAGGAGCTTTCTGTCAT 900
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      TGTGGCAAGGAGCAGAGACGGTTCTACGGTGTGCTATCCTGTTGTTGAAACCATCCACAA 960
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      GGATAACATCTGCCATGTTGTTGAGGCTCCTGCCGAGGTGCCTGATAAAATAAAGAAGTT 1020
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      GGCTACTAATGTAGCTGAAAAGGCTATCAAATCATTGGAAGGTGCTGGTGTTTTCGCTGT 1080
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      AGAATTATTTTTAACACAAGATAATCAGGTTTTATTGAATGAAGTAGCTCCAAGGCCTCA 1140
consensus_8544#1      --------------------ATGCTGCAGTAGTATTGAAGAAA-----TTCAACATACCT 35
                                          **  *   **  *******  **     * ***     * 

consensus_8544#0      CAACAGTGGGCATCACACAATTGAGTCATGTTATACCTCGCAATATGAGCAACATTTACG 1200
consensus_8544#1      TTTGAGCTTACA--ATTGTTTCGGCTCATCGTACACCAGAGAGGATGTACCAT-TATGCA 92
                          **    **  *     * *  ****  ** ***    *  ***  * *  * * * 

consensus_8544#0      TGCTATTCTTG-GCCTTCCTCTTGGTGATCCTTCAATGAAAGCGCCTGCATCAATAATGT 1259
consensus_8544#1      TTATCTACTAAAGAAAGAGGCTTAGAGGTC-----ATAATTGCAGGTGCAGGTGGAGCGG 147
                      *  * * **   *       *** * * **     ** *  **   ****     *  * 

consensus_8544#0      ACAACATCCTGGGTGAGGATGAGGGTGAGGCAGGATTTACTCAAGCTCATCAGTTGATTG 1319
consensus_8544#1      CTCACTTACCAGGCAAGTGTGACAGAAAAAACACATGCATGAATGCATCATAATACTTCA 207
                         ** * *  **  **  ***  *  *      **  *   * **     * *   *  

consensus_8544#0      AGAGAGCTTTGGACATTTCAGGTGCATCTGTCCATTGGTATGCAAAACCAGAAATACGGA 1379
consensus_8544#1      TATTAGTTCAAGAC----CAAAT-TATGTGCATACTGGTACACTTGT---GTTTTGTCTA 259
                          ** *   ***    **  *  ** **   * *****  *       *   *    *

consensus_8544#0      AGCAGAGAAAGATGGGCCATATTACAATTGTGGGGCCTTCAAAGTACAGTGTAAAAGCAC 1439
consensus_8544#1      GATTATGGTACTTGGACT-CATTTCATTT---CGAGCATCAATTCTTGCTGTATTTTTCT 315
                            *  *  *** *   *** ** **    *  * ****       ****       

consensus_8544#0      GCTTAGATAAGTTGCTGCAAAGAGACGCATATGACCCCAAGAAAGTTGCAGTTAAACCTC 1499
consensus_8544#1      TCCAAACTGAGTAA---TAAGGAATGCTATATAACT---GGATCATTTCATTGTGTTCTA 369
                       *  *  * ***      ** **     **** **     **   ** ** *     ** 

consensus_8544#0      GTGCTGCAATAATAATGGGTTCTGATTCTGATCTTCCTGTCATGAAAGATGCTGCAGTAG 1559
consensus_8544#1      TTGTAGCAA--GTAGCAAGTGCTAGTT----TCACCCTGTGCTTGA-GTTGCTGAAATGG 422
                       **  ****   **    ** **  **    **  *****  *  * * ***** * * *

consensus_8544#0      TATTGAAGAAATTCAACATACCTTTTGAGCTTACAATTGTTTCGGCTCATCGTACACCAG 1619
consensus_8544#1      ----------ATGCAACACACGTTTGGATAATGGGTTCGATGTTGGAAAT-GTAGACCAA 471
                                ** ***** ** *** **   *    * * *   *   ** *** **** 

consensus_8544#0      A-GAGGATGTACCATTATGCATTATCTACTAAAGAAAGAGGCTTAGAGGTCATAATTGCA 1678
consensus_8544#1      ACGCTTATTTTATAAAGAAAATTATTCACAATCCATCTTGATTAATGAATGATAAT---- 527
                      * *   ** *   *      *****  ** *   *    *  * *    * *****    

consensus_8544#0      GGTGCAGGTGGAGCGGCTCACTTACCAGGGATGGTGGCTTCATTGACTTCTGTCCCAGTA 1738
consensus_8544#1      -ATATAAAAAAAACTATTTTTGGTTCAGGGATGGTGGCTTCATTGACTTCTGTCCCAGTA 586
                        *  *     * *   *       ***********************************

consensus_8544#0      ATAGGAGTACCCATCATGACTTCATCTTTACATGGAACTGATTCCCTCCTATCTATTGTC 1798
consensus_8544#1      ATAGGAGTACCCATCATGACTTCATCTTTACATGGAACTGATTCCCTCCTATCTATTGTC 646
                      ************************************************************

consensus_8544#0      CAGATGCCGAAAGGTATTCCTGTTGCTACTGTTGCAATTGGAAATGCGGAAAATGCAGGT 1858
consensus_8544#1      CAGATGCCGAAAGGTATTCCTGTTGCTACTGTTGCAATTGGAAATGCGGAAAATGCAGGT 706
                      ************************************************************

consensus_8544#0      TTATTGGCAGTTAGGATGCTGGCCTCAAGAGATCCTGAGTTGGGGGACAAGGCAACTGAA 1918
consensus_8544#1      TTATTGGCAGTTAGGATGCTGGCCTCAAGAGATCCTGAGTTGGGGGACAAGGCAACTGAA 766
                      ************************************************************

consensus_8544#0      TACCAGCATGATCTGAGGGATATGGTGTTGGAGAAAGCAAAAAGGCTCGAGGAACTAGGT 1978
consensus_8544#1      TACCAGCATGATCTGAGGGATATGGTGTTGGAGAGAG----------------------- 803
                      ********************************** **                       

consensus_8544#0      TGGGAGGGATATACCGAGCTATACTTGAAGAAGCATTGATCTCTGCTGCCCGTTTAATTG 2038
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      ACATTCTTTTTGATCCAGTGTTGACATAAGCAGATATGGTCCATGTGGAGGCCTGGAGAG 2098
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      GGCGTGCCGACTTACGAAGTGAAAGATGTCGACGAAACACGGCGCATGAGCATCTCAGTA 2158
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      GCAGAAAGCTTTGCTTGTATAACTGTAACAACATGCCTGCCTGAAATGTTCATGTGGATC 2218
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      TTATGATGATATTTCAGGGAAAAAAAATCAACCAATTTTAAAGAGTTATGAAAAAAAAAG 2278
consensus_8544#1      ------------------------------------------------------------
                                                                                  

consensus_8544#0      AATTGAGTCCCTAAAGTATCAAAAAAAAAAAA 2310
consensus_8544#1      --------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)