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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1922 fasta sequence
[AAAAATTTAGAGAGACCAACCACTCATCGTCTCTCTACTTCCATCCGCTTCAACCTTCAGGTGCGCCGCCTCGCCCTCGTCGGATCCCTAGTAGGGAGGGGAGGTCTCCGTCTGCCGGCGGGAGGCGCGGGCGCCGCCATGACCGGGACATCCTGGATAATTGACAGCCATAGAATTGCTTCAAAAATAAAAAATGCATCTGGATCGGTGGATGCCAGTAAGCACAAATGGGTTAGCAACCCAACTAAGGCTTGTCCAAGGTGCAACCACATCATTGATAACAGTGATGTTGTTCATCAATGGCCTGGTTTGCCAAGAGGTGTAAAGTTTGATCCAACTGACCAAGAATTGCTTTGGCATTTGCTTGCAAAGCATGGCAAAGTTGGTGCAAAAGCTCATCCGTTCATTGATGAATTTATTCCAACAGTCGAGGAAGATGATGGTATCTGCTATACCCATCCACAGAAACTTCCAGGTGTCAAGCAAGATGGAAGCGTATCACACTTTTTCCATAGAACATTTAAGGCCTATAATACTGGAATAAGAAAGCGCCGGAAGATAAACACTGGTGATCTTGCTGATGTCCGCTGGCACAAGACTGGTAAGACAAAGCCAGTAGTAGTTGATGGAAAACACCTTGGTTGTAAGAAATTCATGGTGCTATATATGAGCACCATGAAAGGTGGTAAACCTGAAAAGACCAATTGGGTGATGCATCAGTACCACCTAGGAACTGGGGAAGATGAGGTAGAAGGGCAGTATGTTGTCTCTAAATTATTGTTCCCAGC-ACAGTTTAAACCTGGGGGAGAAGAACGCACAGGACTAAACCTCTGCAGATGCTTTAGAATCTATAGTTGCTGAAGATCTTCCAAATATTCCTCCACTTCCCCTGGAAGAACATGTTTTTACCAACCAAGAACTAGAAGTTCTTGAGAAATCTGAAACTATCACTGACCAGGGAAAAGAGACTAGCGAAATAAACAACGAAGATAACGCTGTAGAAGATGTTGCGCATATGGCTACTGAGAAACCTGAGGATGGAGATAACCCCTCATCGCAAGATCCGAAATGGTGGGAAGGTGAATCCCAGTTCCTGTTAGACTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGAGTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGATGAAACCGATAAGATAAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCAACACCA-TTTTGTACA-TTGAAGAAACA-ACTGAAGCCTCTTCCTTCTGCGAGACAACAGTAAAAT-GCTGTCGATATATGTGGTGAAGCAACTCTTGTCTCGGACAGTAAAAAGTCATAATTTTGGCCCGGCGGCTTGCCGGGGTAGGCAAAAGGTGAGCTTATGCGCTGGCTTGCCCCTGAATCCCTTGATGCATATGGACTGTGCACCGGTGACTATTCAATGCTAAAGATCACATATTCCTGGCTGTAAATTGTGATGGTGGATGTCTCATTTTGCTTGGATACTCTGGACCATCCGGTGGTACAAGGGGAACTTTTGCTTCTGGTTGAACTGATTACTCCAATAACTTTCGTGTTAATAACTTTTGCCATCATGATAGTGCCTATTATTTATAAATGTGGACACAAGTCATTTTCTGGAGCTTGTGGTAAAGCAGGGCTGAGAATCTCGTGCAAGCTTCATCTTGTAAATTGCAGTAATCAGCATAAGATTGTGACAAAAAAAA]
[+] EMBL CB631107 [AAAAATTTAGAGAGACCAACCACTCATCGTCTCTCTACTTCCATCCGCTTCAACCTTCAGGTGCGCCGCCTCGCCCTCGTCGGATCCCTAGTAGGGAGGGGAGGTCTCCGTCTGCCGGCGGGAGGCGCGGGCGCCGCCATGACCGGGACATCCTGGATAATTGACAGCCATAGAATTGCTTCAAAAATAAAAAATGCATCTGGATCGGTGGATGCCAGTAAGCACAAATGGGTTAGCAACCCAACTAAGGCTTGTCCAAGGTGCAACCACATCATTGATAACAGTGATGTTGTTCATCAATGGCCTGGTTTGCCAAGAGGTGTAAAGTTTGATCCAACTGACCAAGAATTGCTTTGGCATTTGCTTGCAAAGCATGGCAAAGTTGGTGCAAAAGCTCATCCGTTCATTGATGAATTTATTCCAACAGTCGAGGAAGATGATGGTATCTGCTATACCCATCCACAGAAACTTCCAGGTGTCAAGCAAGATGGAAGCGTATCACACTTTTTCCATAGAACATTTAAGGCCTATAATACTGGAATAAGAAAGCGCCGGAAGATAAACACTGGTGATCTTGCTGATGTCCGCTGGCACAAGACTGGTAAGACAAAGCCAGTAGTAGTTGATGGAAAACACCTTGGTTGTAAGAAATTCATGGTGCTATATATGAGCACCATGAAAGGTGGTAAACCTGAAAAGACCAATTGGGTGATGCATCAGTACCACCTAGGAACTGGGGAAGATGAGGTAGAAGGGCAGTATGTTGTCTCTAAATTATTGTTCCCAGC ACAGTTTAAACCTGGGGGAGAAGAACGCACAGGACTAAACCTC ]
[+] EMBL AK060434 [ CAGTCGAGGAAGATGATGGTATCTGCTATACCCATCCACAGAAACTTCCAGGTGTCAAGCAAGATGGAAGCGTATCACACTTTTTCCATAGAACATTTAAGGCCTATAATACTGGAATAAGAAAGCGCCGGAAGATAAACACTGGTGATCTTGCTGATGTCCGCTGGCACAAGACTGGTAAGACAAGGCCAGTAGTAGTTGATGGAAAACACCTTGGTTGTAAGAAATTCATGGTGCTATATATGAGCACCATGAAAGGTGGTAAACCTGAAAAGACCAATTGGGTGATGCATCAGTACCACCTAGGAACTGGGGAAGATGAGGTAGAAGGGCAGTATGTTGTCTCTAAATTATTGTT TCAGCAACAGTTTAAACCT GGGGAGAAGAACGCACAGGACTTAACCTCTGCAGATGCTTTAGAATCTATAGTTGCTGAAGATCTTCCAAATATTCCTCCACTTCCCCTGGAAGAACATGTTTTTACCAACCAAGAACTAGAAGTTCTTGAGAAATCTGAAACTATCACTGACCAGGGAAAAGAGACTAGCGAAATAAACAACGAAGATAACGCTGTAGAAGATGTTGCGCATATGGCTACTGAGAAACCTGAGGATGGAGATAACCCCTCATCGCAAGATCCGAAATGGTGGGAAGGTGAATCCCAGTTCCTGTTAGACTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGAGTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGATGAAACCGATAAGATAAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCAACACCA TTTTGTACA TTGAAGAAACA ACTGAAGCCTCTTCCTTCTGCGAGACAACAGTAAAAT GCTGTCGATATATGTGGTGAAGCAACTCTTGTCTCGGACAGTAAAAAGTCATAATTTTGGCCCGGCGGCTTGCCGGGGTAGGCAAAAGGTGAGCTTATGCGCTGGCTTGCCCCTGAATCCCTTGATGCATATGGACTGTGCACCGGTGACTATTCAATGCTAAAGATCACATATTCCTGGCTGTAAATTGTGATGGTGGATGTCTCATTTTGCTTGGATACTCTGGACCATCCGGTGGTACAAGGGGAACTTTTGCTTCTGGTTGAACTGATTACTCCAATAACTTTCGTGTTAATAACTTTTGCCATCATGATAGTGCCTATTATTTATAAATGTGGACACAAGTCATTTTCTGGAGCTTGTGGTAAAGCAGGGCTGAGAATCTCGTGCAAGCTTCATCTTGTAAATTGCAGTAATCAGCATAAGAT ]
[-] EMBL CB631108 [ TAGACTCTCAGCAACTGGCAGAGAACCTTGCGATTGNCGATGAGTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGATGAAACCGATAAGATAAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCAACACCA TTTTGTACA TTGAAGAAACA ACTGAAGCCTCTTCCTTCTGCGAGACAACAGTAAAAT GCTGTCGATATATGTGGTGAAGCAACTCTTGTCTCGGACAGTAAAAAGTCATAATTTTGGCCCGGCGGCTTGCCGGGGTAGGCAAAAGGTGAGCTTATGCGCTGGCTTGCCCCTGAATCCCTTGATGCATATGGACTGTGCACCGGTGACTATTCAATGCTAAAGATCACATATTCCTGGCTGTAAATTGTGATGGTGGATGTCTCATTTTGCTTGGATACTCTGGACCATCCGGTGGTACAAGGGGAACTTTTGCTTCTGGTTGAACTGATTACTCCAATAACTTTCGTGTTAATAACTTTTGCCATCATGATAGTGCCTATTATTTATAAATGTGGACACAAGTCATTTTCTGGAGCTTGTGGTAAAGCAGGGCTGAGAATCTCGTGCAAGCTTCATCTTGTAAATTGCAGTAATCAGCATAAGATT ]
[+] EMBL BM038348 [ AACACCACTTTTGTACACTTGAAGAAACACACTGAACCCTCTTCCTTCTGCGAGACCACAGTAAAATNCCTGTCGATATATGTGGTGAA CCACTCTTGTCTCGGACAGTAAAAAGTCATAATTTTGGCCCGGCGGCTTGCCGGGGTA GC AAAGGTGAGCTTATGCGCTGGCTTGCCCCTGAATCCCTTGATGCATATGGACTGTGCACCGGTGACTATTCAATGCTAAAGATCACATATTCCTGGCTGTAAATTGTGATGGTGGATGTCTCATTTTGCTTGGATACTCTGGACCATCCGGTGGTAC AGGGGAACTTTTGCTTCTGGTTGAACTGATTACTCC ATAACTTTCGTGTTAATAACTTTTGCCATCATGATAGTGCCTATTATTTATAAATGTGGACACAAGTCATTTTCTGGAGCTTGTGGTAAACCAGGGCTGAGAATCTCGTGCAAGCTTCATCTTGTAAATT CAGTAATCAGCATAAGATTGTGACAAAAAAAA]
consensusID : consensus_8546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[AGACGAGACAAGGGGCTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGAGTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGAACCCGATAAGATAAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAACGCGTTTGAATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCGACACCATTTTGTACATTGAAGAAACAACTGAAGCCTCTTCCTTTTGCGAGACAACAGTAAAATGCTGTCGATATATGTGGTGAAGCAACTCTTGTCTCGGACAGTAAAACGTCATATTTTGGCCCGGCTGCTTTGCCGGGGTAGGCAATAGGTGAGCTTAAGCGCTGGCTTGCCCCTGAATCCCCTGATGCATATGAACTGTGCACCGGTGACTATTCAATGCTAAAGATCCCATATTCCTGGCTGTAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762527 [AGACGAGACAAGGGGCTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGAGTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGAACCCGATAAGATAAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAACGCGTTTGAATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCGACACCATTTTGTACATTGAAGAAACAACTGAAGCCTCTTCCTTTTGCGAGACAACAGTAAAATGCTGTCGATATATGTGGTGAAGCAACTCTTGTCTCGGACAGTAAAACGTCATATTTTGGCCCGGCTGCTTTGCCGGGGTAGGCAATAGGTGAGCTTAAGCGCTGGCTTGCCCCTGAATCCCCTGATGCATATGAACTGTGCACCGGTGACTATTCAATGCTAAAGATCCCATATTCCTGGCTGTAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8546#0 AAAAATTTAGAGAGACCAACCACTCATCGTCTCTCTACTTCCATCCGCTTCAACCTTCAG 60
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 GTGCGCCGCCTCGCCCTCGTCGGATCCCTAGTAGGGAGGGGAGGTCTCCGTCTGCCGGCG 120
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 GGAGGCGCGGGCGCCGCCATGACCGGGACATCCTGGATAATTGACAGCCATAGAATTGCT 180
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 TCAAAAATAAAAAATGCATCTGGATCGGTGGATGCCAGTAAGCACAAATGGGTTAGCAAC 240
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 CCAACTAAGGCTTGTCCAAGGTGCAACCACATCATTGATAACAGTGATGTTGTTCATCAA 300
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 TGGCCTGGTTTGCCAAGAGGTGTAAAGTTTGATCCAACTGACCAAGAATTGCTTTGGCAT 360
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 TTGCTTGCAAAGCATGGCAAAGTTGGTGCAAAAGCTCATCCGTTCATTGATGAATTTATT 420
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 CCAACAGTCGAGGAAGATGATGGTATCTGCTATACCCATCCACAGAAACTTCCAGGTGTC 480
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 AAGCAAGATGGAAGCGTATCACACTTTTTCCATAGAACATTTAAGGCCTATAATACTGGA 540
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 ATAAGAAAGCGCCGGAAGATAAACACTGGTGATCTTGCTGATGTCCGCTGGCACAAGACT 600
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 GGTAAGACAAAGCCAGTAGTAGTTGATGGAAAACACCTTGGTTGTAAGAAATTCATGGTG 660
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 CTATATATGAGCACCATGAAAGGTGGTAAACCTGAAAAGACCAATTGGGTGATGCATCAG 720
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 TACCACCTAGGAACTGGGGAAGATGAGGTAGAAGGGCAGTATGTTGTCTCTAAATTATTG 780
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 TTCCCAGCACAGTTTAAACCTGGGGGAGAAGAACGCACAGGACTAAACCTCTGCAGATGC 840
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 TTTAGAATCTATAGTTGCTGAAGATCTTCCAAATATTCCTCCACTTCCCCTGGAAGAACA 900
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 TGTTTTTACCAACCAAGAACTAGAAGTTCTTGAGAAATCTGAAACTATCACTGACCAGGG 960
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 AAAAGAGACTAGCGAAATAAACAACGAAGATAACGCTGTAGAAGATGTTGCGCATATGGC 1020
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 TACTGAGAAACCTGAGGATGGAGATAACCCCTCATCGCAAGATCCGAAATGGTGGGAAGG 1080
consensus_8546#1 ---------------------------------------------------------AGA 3
**
consensus_8546#0 TGAATCCCAGTTCCTGTTAGACTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGA 1140
consensus_8546#1 CGAGACAAGG---------GGCTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGA 54
** * * * ***************************************
consensus_8546#0 GTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGATGAAACCGATAAGAT 1200
consensus_8546#1 GTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGAT---GAACCCGATAAGAT 111
******************************************* *** **********
consensus_8546#0 AAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGA 1260
consensus_8546#1 AAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGA 171
************************************************************
consensus_8546#0 AGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAATGCGTCTGA 1320
consensus_8546#1 AGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAACGCGTTTGA 231
*************************************************** **** ***
consensus_8546#0 ATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGG 1380
consensus_8546#1 ATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGG 291
************************************************************
consensus_8546#0 CAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCAACACCATTTTGTACATTGAAGAA 1440
consensus_8546#1 CAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCGACACCATTTTGTACATTGAAGAA 351
************************************ ***********************
consensus_8546#0 ACAACTGAAGCCTCTTCCTTCTGCGAGACAACAGTAAAATGCTGTCGATATATGTGGTGA 1500
consensus_8546#1 ACAACTGAAGCCTCTTCCTTTTGCGAGACAACAGTAAAATGCTGTCGATATATGTGGTGA 411
******************** ***************************************
consensus_8546#0 AGCAACTCTTGTCTCGGACAGTAAAAAGTCATAATTTTGGCCCGGCGGCTT-GCCGGGGT 1559
consensus_8546#1 AGCAACTCTTGTCTCGGACAGTAAAACGTCATA-TTTTGGCCCGGCTGCTTTGCCGGGGT 470
************************** ****** ************ **** ********
consensus_8546#0 AGGCAAAAGGTGAGCTTATGCGCTGGCTTGCCCCTGAATCCCTTGATGCATATGGACTGT 1619
consensus_8546#1 AGGCAATAGGTGAGCTTAAGCGCTGGCTTGCCCCTGAATCCCCTGATGCATATGAACTGT 530
****** *********** *********************** *********** *****
consensus_8546#0 GCACCGGTGACTATTCAATGCTAAAGATCACATATTCCTGGCTGTAAATTGTGATGGTGG 1679
consensus_8546#1 GCACCGGTGACTATTCAATGCTAAAGATCCCATATTCCTGGCTGTAAAAAAAAAAAAAAA 590
***************************** ****************** *
consensus_8546#0 ATGTCTCATTTTGCTTGGATACTCTGGACCATCCGGTGGTACAAGGGGAACTTTTGCTTC 1739
consensus_8546#1 AAAAAAA----------------------------------------------------- 597
*
consensus_8546#0 TGGTTGAACTGATTACTCCAATAACTTTCGTGTTAATAACTTTTGCCATCATGATAGTGC 1799
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 CTATTATTTATAAATGTGGACACAAGTCATTTTCTGGAGCTTGTGGTAAAGCAGGGCTGA 1859
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 GAATCTCGTGCAAGCTTCATCTTGTAAATTGCAGTAATCAGCATAAGATTGTGACAAAAA 1919
consensus_8546#1 ------------------------------------------------------------
consensus_8546#0 AAA 1922
consensus_8546#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||