These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1388 fasta sequence [GCCGCCGCCGTCATACTCATATCATATCTTCTTCTTCTTCTCCAAAAAAATACTAGTGTAATGTGTGATTTGTGAGAGATGATGGAGCTGTGTAGGATTCGAACCTTCCAGAAGAGCCTACTGAGGCCCCTCCTCCTCCTCCAGCATGCCCCTTGTAGAACCCTCCAAACCCTAGGGCGGTCCCCTTCGCCCTCGGTGTTCCGGCCCCCCCCGCCGCCGCCCCCCGCTCCTCCTCCTCCTCCTCCGCTCCTCCTTCGCCTCCGTCTCTCCGGGTCCGGCCCCCGGGAGCGGGACAGGCGAATGCCCCCCGCCCCCGCCCGCGCCCTTGCCGCCCGACGAGCTCGCCTCCGACGACGACGCCTACTACCACGAGCACATTCTCGAGGCCACGCAGGAGGACCAAAGTCGCCTCGTTCCAGTCAAGGCCTACTTCCCCTGCACCAGCATCAACCTCAAGAGCCTCCAGTCCCAGAATTCCTTCAATGTCATCCCCCCCACTTCGCGTGCTACCAACTACGTCGTCCTCAGGTACTACGATGTCAAGGGAGACCCAGAGGGTTTTAAGGCTGGCATCATAGATGAAAGTCATTGCCACTATATGGTGGTGTTCCAATATGGGTCCATTGTGCTGTTTAATGTTTCTGATCATGAAGCGGATGGATACCTGAAAATTGTTGAGAAGCATGCATCAGGCTTACTTCCAGAGATGAGAAAAGATGATTATGCTGTTGTTGAGAAGCCTACCTTGGAGGCATGGATGCAGGGTGGACTTGACTTCATCATACTCAGGGACCTAAGTATCGATGGGATTCGTACAATTGGAAGTGTCCTTGGTCAGAGTATTGCCCTTGACTATTATATCCGGCAAGTAGATGGAATGGTAGCTGAGTTCACGGATATAAATCGTGGAATGGAAAAGACTGGTACCTTCACTATGGAAAGGAAAAAGCTTTTCCAGTTGGTAGGAAAGGCTAACTCTAACCTGGCAGATGTTATTCTCAAGCTTGGGCTTTTTGAAAGGTCAGACATTGCTTGGAAGAACGCAAACTATGCTCAGATTTGGGAATACCTTCGAGATGAATATGAGTTAACCCAAAGATTTTGGAACCTTGATTTTAAGTTGAAATTTGTTGAGCACAACATTCGTTTTCTTCAAGAGATCCTTCAGAACAGGAAGTCTGATTTTCTGGAATGGCTTATCATAATTTTGATTAGTGTGGAGATCCTGATATCTGTTTACAACATTGTTCAGGAGCAAATGTAGCTGACTATTGTGGGAATCCTTGCTGGGGCTGAAACCTCGTCAGAACCACTGTGGCACGAACCACGAATGACACGTTCTGTCTTGTGGATTTTTCAATGGATCAAGTAAGAGCCTTGTATATGCG] [+] EMBL AK065595 [GCCGCCGCCGTCATACTCATATCATATCTTCTTCTTCTTCTCCAAAAAAATACTAGTGTAATGTGTGATTTGTGAGAGATGATGGAGCTGTGTAGGATTCGAACCTTCCAGAAGAGCCTACTGAGGCCCCTCCTCCTCCTCCAGCATGCCCCTTGTAGAACCCTCCAAACCCTAGGGCGGTCCCCTTCGCCCTCGGTGTTCCGGCCCCCCCCGCCGCCGCCCCCCGCTCCTCCTCCTCCTCCTCCGCTCCTCCTTCGCCTCCGTCTCTCCGGGTCCGGCCCCCGGGAGCGGGACAGGCGAATGCCCCCCGCCCCCGCCCGCGCCCTTGCCGCCCGACGAGCTCGCCTCCGACGACGACGCCTACTACCACGAGCACATTCTCGAGGCCACGCAGGAGGACCAAAGTCGCCTCGTTCCAGTCAAGGCCTACTTCCCCTGCACCAGCATCAACCTCAAGAGCCTCCAGTCCCAGAATTCCTTCAATGTCATCCCCCCCACTTCGCGTGCTACCAACTACGTCGTCCTCAGGTACTACGATGTCAAGGGAGACCCAGAGGGTTTTAAGGCTGGCATCATAGATGAAAGTCATTGCCACTATATGGTGGTGTTCCAATATGGGTCCATTGTGCTGTTTAATGTTTCTGATCATGAAGCGGATGGATACCTGAAAATTGTTGAGAAGCATGCATCAGGCTTACTTCCAGAGATGAGAAAAGATGATTATGCTGTTGTTGAGAAGCCTACCTTGGAGGCATGGATGCAGGGTGGACTTGACTTCATCATACTCAGGGACCTAAGTATCGATGGGATTCGTACAATTGGAAGTGTCCTTGGTCAGAGTATTGCCCTTGACTATTATATCCGGCAAGTAGATGGAATGGTAGCTGAGTTCACGGATATAAATCGTGGAATGGAAAAGACTGGTACCTTCACTATGGAAAGGAAAAAGCTTTTCCAGTTGGTAGGAAAGGCTAACTCTAACCTGGCAGATGTTATTCTCAAGCTTGGGCTTTTTGAAAGGTCAGACATTGCTTGGAAGAACGCAAACTATGCTCAGATTTGGGAATACCTTCGAGATGAATATGAGTTAACCCAAAGATTTTGGAACCTTGATTTTAAGTTGAAATTTGTTGAGCACAACATTCGTTTTCTTCAAGAGATCCTTCAGAACAGGAAGTCTGATTTTCTGGAATGGCTTATCATAATTTTGATTAGTGTGGAGATCCTGATATCTGTTTACAACATTGTTCAGGAGCAAATGTAGCTGACTATTGTGGGAATCCTTGCTGGGGCTGAAACCTCGTCAGAACCACTGTGGCACGAACCACGAATGACACGTTCTGTCTTGTGGATTTTTCAATGGATCAAGTAAGAGCCT ] [+] EMBL CB685363 [ GATTCTAACCTTCCAGAAGAGCCTACTGAGGCCCCTCCTCCTCCTCCAGCATGCCCCTTGTAGAACCCTCCAAACCCTAGGGCGGTCCCCTTCGCCCTCGGTGTTCCGG CCCCCCCGCCGCCGCCCCCCGCTCCTCCTCCTCCTCCTCCGCTCCTCCTTCGCCTCCGTCTCTCCGGGTCCGGCCCCCGGGAGCGGGACAGGCGAATGCCCCCCGCCCCCGCCCGCGCCCTTGCCGCCCGACGAGCTCGCCTCCGACGACCACGCCTACTACCACGAGCACATTCTCCAGGCCACGCATGAGGACCAAAGTCGCCTCGTTCCAGTCAAGGCCTACTTCCCCTGCACCAGCATCAACCTCAAGAGCCTCCAGTCCCAGAATTCCTTCAATGTCATCCCCCCCACTTCGCGTGCTACCAACTACGTCGTCCTCAGGTACTACGATGTCAAGGGAGACCCACAGGGTTTTAAGGCTGGCATCATAGATGAAAGTCATTGCCACTATATGGTGGTGTTCCAATATGGGTCCATTGCGCTGTTTAATGCTTCTGATCAT ] [-] EMBL CB685364 [ TCAGGCTTACTTCCAGAGATGAGAAAAGATGATTATGCTGTTGTTGAGAAGCCTACCTTGGAGACATGGATGCAGGGTGGACTTGACTTCATCATACTCAGGGACCTAAGTATCGATGGGATTCGTACAATTGGAAGTGTCCTTGGTCAGAGTATTGCCCTTGACTATTATATCCGGCAAGTAGATGGAATGGTAGCTGAGTTCACGGATATAAATCGTGGAATGGAAAAGACTGGTACCTTCACTATGGAAAGGAAAAAGCTTTTCCAGTTGGTAGGAAAGGCTAACTCTAACCTGGCAGATGTTATTCTCAAGCTTGGGCTTTTTGAAAGGTCAGACATTGCTTGGAAGAACGCAAACTATGCTCAGATTTGGGAATACCTTCGAGATGAATATGAGTTAACCCAAAGATTTGGGAACCTTGATTTTAAGTTGAAATTTGTTGAGCACAACATTCGTTTTCTTCAAGAGATCCTTCAGAACAGGAAGTCTGATTTTCTGGAATGGCTTATCATAATTTTGATTAGTGTGGAGATCCTGATATCTGTTTACAACATTGTTCAGGAGCAAATGTAGCTGACTATTGTGGGAATCCTTGCTGGGGCTGAAACCTCGTCAGAACCACTGTGGCACGAACCACGAATGACACGTTCTGTCTTGTGGATGTTTCAATGGATCAAGTAAGACCCTTGTATATGCG] consensusID : consensus_8547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [AAGCTTGGGGCTTTTTGAAAGGTCAGACATTGGCTTGGAAGAACCCACAACTATGGCTCAGATTTGGGAATACACTTCGAGATGAATATGAGTTGAACCCCAAGATGTTGGGANACCTTGGATGTTTAAGTTGAAATTTGTTGGAGCNCAACCTGTGCGTGTTNTCTTCAAGAGATCCTTCAGAACCAAGGAAGTCTGATTTTCTGGAATGGGCTTGATGCATAATGTTTGGATTAGTGTGGGAGATCCTGATGATGCTGGTGTTGACAACATGTGTTGCCAGGANCAAAATGTAGCTCGACTATTGTGGGGAATCCCTTGCTGGGGGCTGAAACCTCGTGCAGAACCCCTGGTGGGCCCGAACCCCGAATGACACGTTCTNTCTTGTGGATTTTTCAATGGATCAAGTAAGACCCTTGTATAAAAAAAAAA] [+] EMBL BM038382 [AAGCTTGGGGCTTTTTGAAAGGTCAGACATTGGCTTGGAAGAACCCACAACTATGGCTCAGATTTGGGAATACACTTCGAGATGAATATGAGTTGAACCCCAAGATGTTGGGANACCTTGGATGTTTAAGTTGAAATTTGTTGGAGCNCAACCTGTGCGTGTTNTCTTCAAGAGATCCTTCAGAACCAAGGAAGTCTGATTTTCTGGAATGGGCTTGATGCATAATGTTTGGATTAGTGTGGGAGATCCTGATGATGCTGGTGTTGACAACATGTGTTGCCAGGANCAAAATGTAGCTCGACTATTGTGGGGAATCCCTTGCTGGGGGCTGAAACCTCGTGCAGAACCCCTGGTGGGCCCGAACCCCGAATGACACGTTCTNTCTTGTGGATTTTTCAATGGATCAAGTAAGACCCTTGTATAAAAAAAAAA] consensusID : consensus_8547#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence [TGCCACGGAGCCAATGTAGCTGACTACTTGTGGGAATCCCTTGCTGGGGCTGAAACCTCGTCAGAACCACCTGGGGCCCGAACCCCGAATGACACCGTTCTGTCTTGTGGATTTTTCCATGGATCCAGTAAGAC] [-] EMBL BM422218 [TGCCACGGAGCCAATGTAGCTGACTACTTGTGGGAATCCCTTGCTGGGGCTGAAACCTCGTCAGAACCACCTGGGGCCCGAACCCCGAATGACACCGTTCTGTCTTGTGGATTTTTCCATGGATCCAGTAAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 GCCGCCGCCGTCATACTCATATCATATCTTCTTCTTCTTCTCCAAAAAAATACTAGTGTA 60 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 ATGTGTGATTTGTGAGAGATGATGGAGCTGTGTAGGATTCGAACCTTCCAGAAGAGCCTA 120 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 CTGAGGCCCCTCCTCCTCCTCCAGCATGCCCCTTGTAGAACCCTCCAAACCCTAGGGCGG 180 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 TCCCCTTCGCCCTCGGTGTTCCGGCCCCCCCCGCCGCCGCCCCCCGCTCCTCCTCCTCCT 240 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 CCTCCGCTCCTCCTTCGCCTCCGTCTCTCCGGGTCCGGCCCCCGGGAGCGGGACAGGCGA 300 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 ATGCCCCCCGCCCCCGCCCGCGCCCTTGCCGCCCGACGAGCTCGCCTCCGACGACGACGC 360 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 CTACTACCACGAGCACATTCTCGAGGCCACGCAGGAGGACCAAAGTCGCCTCGTTCCAGT 420 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 CAAGGCCTACTTCCCCTGCACCAGCATCAACCTCAAGAGCCTCCAGTCCCAGAATTCCTT 480 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 CAATGTCATCCCCCCCACTTCGCGTGCTACCAACTACGTCGTCCTCAGGTACTACGATGT 540 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 CAAGGGAGACCCAGAGGGTTTTAAGGCTGGCATCATAGATGAAAGTCATTGCCACTATAT 600 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 GGTGGTGTTCCAATATGGGTCCATTGTGCTGTTTAATGTTTCTGATCATGAAGCGGATGG 660 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 ATACCTGAAAATTGTTGAGAAGCATGCATCAGGCTTACTTCCAGAGATGAGAAAAGATGA 720 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 TTATGCTGTTGTTGAGAAGCCTACCTTGGAGGCATGGATGCAGGGTGGACTTGACTTCAT 780 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 CATACTCAGGGACCTAAGTATCGATGGGATTCGTACAATTGGAAGTGTCCTTGGTCAGAG 840 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 TATTGCCCTTGACTATTATATCCGGCAAGTAGATGGAATGGTAGCTGAGTTCACGGATAT 900 consensus_8547#1 ------------------------------------------------------------ consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 AAATCGTGGAATGGAAAAGACTGGTACCTTCACTATGGAAAGGAAAAAGCTTTTCCAGTT 960 consensus_8547#1 ---------------------------------------AAGCTTGGGGCTTTTTGAAAG 21 consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 GGTAGGAAAGGCTAACTCTAACCTGGCAGATGTTATTCTCAAGCTTGGGCTTTTTGAAAG 1020 consensus_8547#1 GTCAGACATTGGCTTGGAAGAACCCACAACTATGGCTCAGATTTGGGAATACACTTCGAG 81 consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 GTCAGACATTG-CTTGGAAGAACGCA-AACTATG-CTCAGATTTGGGAATAC-CTTCGAG 1076 consensus_8547#1 ATGAATATGAGTTGAACCCCAAGATGTTGGGANACCTTGGATGTTTAAGTTGAAATTTGT 141 consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 ATGAATATGAGTT-AACCCAAAGATTTTGG--AACCTTGAT--TTTAAGTTGAAATTTGT 1131 consensus_8547#1 TGGAGCNCAACCTGTGCGTGTTNTCTTCAAGAGATCCTTCAGAACCAAGGAAGTCTGATT 201 consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 TG-AGCACAACATTCG----TTTTCTTCAAGAGATCCTTCAGAAC--AGGAAGTCTGATT 1184 consensus_8547#1 TTCTGGAATGGGCTTGATGCATAATGTTTGGATTAGTGTGGGAGATCCTGATGATGCTGG 261 consensus_8547#2 ------------------------------------------------------------ consensus_8547#0 TTCTGGAATGGCTTA---TCATAATTTT--GATTAGTGTGG-AGATCCTGATATC----- 1233 consensus_8547#1 TGTTGACAACATGTGTTGCCAGGANCAAAATGTAGCTCGACTATTGTGGGGAATCCCTTG 321 consensus_8547#2 ----------------TGCCACGGAGCCAATGTAGCT-GACTACTTGTGGGAATCCCTTG 43 consensus_8547#0 TGTTTACAACA----TTGTTCAGGAGCAAATGTAGCT-GACTATTGTGGGAA--TCCTTG 1286 ** * ********* ***** * ** * ***** consensus_8547#1 CTGGGGGCTGAAACCTCGTGCAGAACCCCTGGTGGGCCCGAACCCCGAATGACAC-GTTC 380 consensus_8547#2 CTGGGG-CTGAAACCTCGT-CAGAACCACCTG-GGGCCCGAACCCCGAATGACACCGTTC 100 consensus_8547#0 CTGGGG-CTGAAACCTCGT-CAGAACCACTGT--GGCACGAACCACGAATGACAC-GTTC 1341 ****** ************ ******* * *** ****** ********** **** consensus_8547#1 TNTCTTGTGGATTTTTCAATGGATCAAGTAAGACCCTTGTATAAAAAAAAAA 432 consensus_8547#2 TGTCTTGTGGATTTTTCCATGGATCCAGTAAGAC------------------ 134 consensus_8547#0 TGTCTTGTGGATTTTTCAATGGATCAAGTAAGAGCCTTGTATATGCG----- 1388 * *************** ******* ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||