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Oryza sativa
cluster # 8554 cluster # 8554       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8554#0 length = 882 sequences # 5  

consensusID : consensus_8554#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 882
fasta sequence
                              [CCACACAGATAACCAACCCAATGTTCCAGTCAGCCACATCTTATGTTCGGGAGAACCGGAGAGCCTCTGTTGTCTGGGACCAGGAGGCTGGTCGGTATGTTTCAGTGCCTGCGCAGACAAGGGCAGTTCCTGGTCTTGATCTGCCAGCAAGAACCCCGCGTTTCTTGGCAAATCCAACTGGTGAGTCAAGCAACCATGGGAAAAATCTTGCACCTGCAAACGCTTCTTCCTCGGCAATATCATCAGGGCAGCCATCTGAGAGATTGACGTACACTGGGCAGTCGATATTCTTTGGCGGGCCAATTCTGAGCACCTCAGGTACGAACGCTCAGAGGAGCGAA-GNGNCACAAGAGCACGACCTGATGGAAGTAGTGATCCTCCTAATGCCTTCCAGCGTGATACCCGGGGCGAGAGAGCACGCACGGGCTCCTTCCCGGTGTTTGCTCCTGGGACTTTTCAGAAGAACCCACCATTTGACAAGTGATTTCCTGTTCTTGATGTCATCTCTGCTCAAGAGCTTCCATGA-CAATAGAATGAATGATGCATCTGCACTTGGATAGTTCAGATCAGTTGAAGAGGCTGCCTCTTCTGGTGCAGCCACAAGAAGTAGCAAAAAACAGAGAGAGAGAGGATGATTTTTAGAANACTTTAGAGAAGGTTGCTCAAGGACTAACTTTGTTCAATGTTCAGAGAGTNACANTCACTGACTGGTGCNCGTGTGTTTTGTTTTCGTGCGTGTTAGGAATTCAGAAATTTGATNCGTNACAGGTGGTAGGAGAGCTAATTGNTCCTGATATGAAATNTTGANCATCTCCCTCCAGTTGGGCTTCGTGCGCGCTGGAGATGTTTGGAGTGTTCTTTGCAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU161090             [CCACACAGATAACCAACCCAATGTTCCAGTCAGCCACATCTTATGTTCGGGAGAACCGGAGAGCCTCTGTTGTCTGGGACCAGGAGGCTGGTCGGTATGTTTCAGTGCCTGCGCAGACAAGGGCAGTTCCTGGTCTTGATCTGCCAGCAAGAACCCCGCGTTTCTTGGCAAATCCAACTGGTGAGTCAAGCAACCATGGGAAAAATCTTGCACCTGCAAACGCTTCTTCCTCGGCAATATCATCAGGGCAGCCATCTGAGAGATTGACGTACACTGGGCAGTCGATATTCTTTGGCGGGCCAATTCTGAGCACCTCAGGTACGAACGCTCAGAGGAGCGAA GNGNCACAAGAGCACGACCTGATGGAAGTAGTGATCCTCCTAATGCCTTCCAGCGTGATACCCGGGGCGAGAGAGCACGCACGGGCTCCTTCCCGGTGTTTGCTCCTGGGACTTTTCAGAAGAACCCACCATTTGACAAGTGATTTCCTGTTCTTGATGTCATCTCTGCTCAAGAGCTTCCATGA CAATAGAATGAATGATGCATCTGCACTTGGATAGTTCAGATCAGTTGAAGAGGCTGCCTCTTCTGGTGCAGCCACAAGAAGTAGCAAAAAACAGAGAGAGAGAGGATGATTTTTAGAATACTTTAGAGAAGGTTGCTCAAGGACTAACTTTGTTCAATGTTCAGAGAGTga                                                                                                                                                                                         ]
[+] EMBL AU088591             [CCACACAGATAACCAACCCAATGTTCCAGTCAGCCACATCTTATGTTCGGGAGAACCGGAGAGCCTCTGTTGTCTGGGACCAGGAGGCTGGTCGGTATGTTTCAGTGCCTGCGCAGACAAGGGCAGTTCCTGGTCTTGATCTGCCAGCAAGAACCCCGCGTTTCTTGGCAAATCCAACTGGTGAGTCAAGCAACCATGGGAAAAATCTTGCACCTGCAAACGCTTCTTCCTCGGCAATATCATCAGGGCAGCCATCTGAGAGATTGACGTACACTGGGCAGTCGATATTCTTTGGCGGGCCAATTCTGAGCACCTCAGGTACGAACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSS3286A             [                                                                                                                                                                                                                                              ATCATCAGGGCAGCCATCTGAGAGATTGACGTACACTGGGCAGTCGATATTCTTTGGCGGGCCAATTCTGAGCACCTCAGGTACGAACGCTCAGAGGAGCGAANGNGGCACAAGAGCACGACCTGATGGAAGTAGTGATCCTCCTAATGCCTTCCAGCGTGATACCCGGGGCGAGAGAGCACGCACGGGCTCCTTCCCGGTGTTTGCTCCTGGGACTTTTCAGAAGAACCCACCATTTGACAAGTGATTTCCTGTTCTTGATGTCATCTCTGCTCAAGAGCTTCCATGA CAATAGAATGAATGATGCATCTGCACTTGGATAGTTCAGATCAGTTGAAGAGGTTGCCTCTTCTGGTGCAGCCACAA                                                                                                                                                                                                                                                                                       ]
[+] EMBL C97273               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GATGTCATCTCTGCNCAAGAGCTCCCATGACCAATAGNATGAATGATGCATCTGCACTTGGATAGTTCAGANCAGTTGAAGAGGCTGCCTCTTCTGGTNCAGCCACAAGAAGTAGCAAAAAACAGAGAGAGAGAGGATGATTTTTAGAANACTTTAGAGAAGGTTGCTCAAGGACTAACTTTGTTCAATGTTCAGAGAGTNACANTCACTGACTGGTGCNCGTGTGTTTTGTTTTCGTGCGTGTTAGGAATTCAGAAATTTGATNCGTNACAGGTGGTAGGAGAGCTAATTGNTCCTGATATGAAATNTTGANCATCTCCCTCCAGTTGGGCTTCGTGCGCGCTGGAGATGTTTGGAGTGTTCTTTGCAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97259               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAGTTGAAGAGGCTGCCTCTTCTGGTGCAGCCACAAGAAGTAGCNAAAAACAGAGAGAGAGAGGATGATTTTTAGAANACTTTAGAGAAGGTTGCTCAAGGACTAACTTTGTTCAATGTTCAGAGAGTNACATTCACTGACTGGTGCCCGTGTGTTTTGTTTNCGTNCGTGTTAGGAATTCAGAAATTTNATNCGTNACAGGTGGTAGGAGAGCTAATTGTTCCTGATATGAAATGTTGANCATCTCCCTCCAGTTGGGCTTCGTGCNCGCTGGAGATGTTTGGNNTGTTCTTTGCAAAAAAAAAAAAAAAAAAA]


>consensus_8554#0 CCACACAGATAACCAACCCAATGTTCCAGTCAGCCACATCTTATGTTCGGGAGAACCGGA GAGCCTCTGTTGTCTGGGACCAGGAGGCTGGTCGGTATGTTTCAGTGCCTGCGCAGACAA GGGCAGTTCCTGGTCTTGATCTGCCAGCAAGAACCCCGCGTTTCTTGGCAAATCCAACTG GTGAGTCAAGCAACCATGGGAAAAATCTTGCACCTGCAAACGCTTCTTCCTCGGCAATAT CATCAGGGCAGCCATCTGAGAGATTGACGTACACTGGGCAGTCGATATTCTTTGGCGGGC CAATTCTGAGCACCTCAGGTACGAACGCTCAGAGGAGCGAAGNGNCACAAGAGCACGACC TGATGGAAGTAGTGATCCTCCTAATGCCTTCCAGCGTGATACCCGGGGCGAGAGAGCACG CACGGGCTCCTTCCCGGTGTTTGCTCCTGGGACTTTTCAGAAGAACCCACCATTTGACAA GTGATTTCCTGTTCTTGATGTCATCTCTGCTCAAGAGCTTCCATGACAATAGAATGAATG ATGCATCTGCACTTGGATAGTTCAGATCAGTTGAAGAGGCTGCCTCTTCTGGTGCAGCCA CAAGAAGTAGCAAAAAACAGAGAGAGAGAGGATGATTTTTAGAANACTTTAGAGAAGGTT GCTCAAGGACTAACTTTGTTCAATGTTCAGAGAGTNACANTCACTGACTGGTGCNCGTGT GTTTTGTTTTCGTGCGTGTTAGGAATTCAGAAATTTGATNCGTNACAGGTGGTAGGAGAG CTAATTGNTCCTGATATGAAATNTTGANCATCTCCCTCCAGTTGGGCTTCGTGCGCGCTG GAGATGTTTGGAGTGTTCTTTGCAAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)