These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1992 fasta sequence [TCTCGCTGACGAGGCTGGAGCTGGACGAGAGGTACAAGGAGAACGTGATACTGAAGAAGATCAAGGTGGGGACGGCGGGGGCGAAGGAGTGCGGCGACTACGAGGAGTGGTTCAACTACCGGGTGGCAAGGGCGGCGCCGGAGTCGTGCGCCGAGTTCCTCGGCAGCTTCGTCGCCGACAAGACCAAGTCCGAGTTCGTCAAGGGCGGCAAATGGCTCGTCTGGAAATTCGAGGGTGACCGGACGCTGGGCAACTACATGAGCGACCGCAACTTCCCCTTCAACCTGGAGGGCCTCATGTTCGGGCGCGCCGTGCGGGGGCTCGACGACGGCAGCCGCGCCGCGCTGGTGGTGAAGCAGGTGATGCGGCAGCTGGTGACCTCCCTGAAGCGCATCCACGGCACCGGCATCGTCCACCGCGACATCAAGCCGTCCAACCTCGTCGTCACCCGGCGGGGGCAGGTGAAGCTCATCGACTTCGGCGCCGCCACCGACCTCCGCATCGGCAAGAACTACGTCCCCGACCGCGCCCTCCTCGACCCGGACTACTGCCCGCCTGAGCTCTACGTCCTCCCCGAGGAGACGCCCCAGCCGCCCGCCGAGCCCATCGCCGCCATCCTCTCCCCGATCCTCTGGCAGATTAACAGCCCGGACCTGTTCGACATGTACTCGGCGGGGATCGTGCTGATGCAGATGGCGTCGCCGATGCTGAGGTCGCCGTCGGGGCTCAAGAACTTCAACGCCGAGCTTCAGGCCGCCGGGTACGACCTCAACCGGTGGCGGGAGACCACGCGGCGGAGACCCGACCTGCAGATCCTCGACCTCGACTCCGGCAGGGGGTGGGACCTCGCCACCAAGCTCATCTCGCAGCGCGGCGCCGACAAGCGCGGCCGCCTCACCGCCGCCGCCGCCCTGCGCCACCCTTACTTCCTCCTCGGCGGCGACCAGGCCGCCGCCGTCTTGTCCAAGCTGTCACTCAGCAAGTAGGTTATACAAAACAACTCAATGCACAAAATTAAGAACACATGCAGTGATCAGGTCACCACTCACCAATGGCATTAGCATTTTTGTTTATGATCCATTGGAGAGATCAAGAACTCAAGATTGATCCAAGAGAGAGGGAAAAGGAGGAGGAAGAAACAATATGGTAATATATAATTACATTGTTTTGTATGAGGTTAATCACTTTGAACAGTGCGGTGCAGAGTTTGCAGACACTAGCTAACTTAACTTAATTACTGCCCGTATTCGGACTGAACTCTACTGAGAAATCCCTACTTCTGTTGGTCAGCTTCTTGCAACCTATGTAGATTTCTGAACTGTTTCTTCAGCCAATCCAGTACTTTGATTCGACAGAGAGCTCATTCTACTGATTTGGCTCACCAATTTCTTAATTAGACAGCAAACCAAAAAAAAATGCTTATACATCATCATATAACTTTGGCCGGTTAAGCTGTTCGAACTTTTCCTGAAGATCTTCATGGTTGCCTCCAACAAGCTTATCAATCTCCTCATTGTTTTTCATGAAGATGAACGTTGGGGTTGCACGCACATCGTATTGCGTCACCAGCTCCGGCATTTCGTCTACATCCACGGACACGAAAACAATGTCAGGATACTTCAGTGAAAGTTCAGCGAATAGAGGGGCAGCATTCCTACACGGAGTGCACCAAATTGCACTGAATTTTAGCACAACTGTTTTGCCATGCTCAGCTACTTCTTCCATTGTATTGTCCCAATTCTTTTGATCAGTTACCAAAGTCACATTTCCGCCACTGTAGTCCAGGTGCTCCTCGGCGTCTACAGTGCTGCTGCCACAGCAACCCATCGACTTGAGAAAATTCGTCAAGATGCAAGTGTCCTCTGCTCCACTCTGCAAGAGCAAAAGGGCAAGAAAAGTTTGGCTCGCCGTCTGCTTGGTTCTGCGCCGAGCACGTCGGCCGTGCGTCGACGGCGGCGGCGGCGGCCCCCGGCGGAGGGGTGGGTGGCACGG] [+] EMBL CB652420 [TCTCGCTGACGAGGCTGGAGCTGGACGAGAGGTACAAGGAGAACGTGATACTGAAGAAGATCAAGGTGGGGACGGCGGGGGCGAAGGAGTGCGGCGACTACGAGGAGTGGTTCAACTACCGGGTGGCAAGGGCGGCGCCGGAGTCGTGCGCCGAGTTCCTCGGCAGCTTCGTCGCCGACAAGACCAAGTCCGAGTTCGTCAAGGGCGGCAAATGGCTCGTCTGGAAATTCGAGGGTGACCGGACGCTGGGCAACTACATGAGCGACCGCAACTTCCCCTTCAACCTGGAGGGCCTCATGTTCGGGCGCGCCGTGCGGGGGCTCGACGACGGCAGCCGCGCCGCGCTGGTGGTGAAGCAGGTGATGCGGCAGCTGGTGACCTCCCTGAAGCGCATCCACGGCACCGGCATCGTCCACCGCGACATCAAGCCGTCCAACCTCGTCGTCACCCGGCGGGGGCAGGTGAAGCTCATCGACTTCGGCGCCGCCACCGACCTCCGCATCGGCAAGAACTACGTCCCCGACCGCGCCCTCCTCGACCCGGACTACTGCCCGCCTGAGCTCTACGTCCTCCCCGAGGAGACGCCCCAGCCGCCCGCCGAGCCCATCGCCGCCATCCTCTCCCCGATCCTCTGGCAGATTAACAGCCCGGACCTGTTCGACATGTACTCGGCGGGGATCGTGCTGATGCAGATGGCGTCGCCGATGCTGAGGTCGCCGTCGGGGCTCAAGAACTTCAACGCCGAGCTTCAGGCCGCCGG ] [+] EMBL AK061052 [ AGAGGTACAAGGAGAAGGTGATACTGAAGAAGATCAAGGTGGGGACGGCGGGGGCGAAGGAGTGCGGCGACTACGAGGAGTGGTTCAACTACCGGGTGGCAAGGGCGGCGCCGGAGTCGTGCGCCGAGTTCCTCGGCAGCTTCGTCGCCGACAAGACCAAGTCCGAGTTCGTCAAGGGCGGCAAATGGCTCGTCTGGAAATTCGAGGGTGACCGGACGCTGGGCAACTACATGAGCGACCGCAACTTCCCCTTCAACCTGGAGGGCCTCATGTTCGGGCGCGCCGTGCGGGGGCTCGACGACGGCAGCCGCGCCGCGCTGGTGGTGAAGCAGGTGATGCGGCAGCTGGTGACCTCCCTGAAGCGCATCCACGGCACCGGCATCGTCCACCGCGACATCAAGCCGTCCAACCTCGTCGTCACCCGGCGGGGGCAGGTGAAGCTCATCGACTTCGGCGCCGCCACCGACCTCCGCATCGGCAAGAACTACGTCCCCGACCGCGCCCTCCTCGACCCGGACTACTGCCCGCCTGAGCTCTACGTCCTCCCCGAGGAGACGCCCCAGCCGCCCGCCGAGCCCATCGCCGCCATCCTCTCCCCGATCCTCTGGCAGATTAACAGCCCGGACCTGTTCGACATGTACTCGGCGGGGATCGTGCTGATGCAGATGGCGTCGCCGATGCTGAGGTCGCCGTCGGGGCTCAAGAACTTCAACGCCGAGCTCAAGGCCGCCGGGTACGACCTCAACCGGTGGCGGGAGACCACGCGGCGGAGACCCGACCTGCAGATCCTCGACCTCGACTCCGGCAGGGGGTGGGACCTCGCCACCAAGCTCATCTCGCAGCGCGGCGCCGACAAGCGCGGCCGCCTCACCGCCGCCGCCGCCCTGCGCCACCCTTACTTCCTCCTCGGCGGCGACCAGGCCGCCGCCGTCTTGTCCAAGCTGTCACTCAGCAAGTAGGTTATACAAAACAACTCAATGCACAAAATTAAGAACACATGCAGTGATCAGGTCACCACTCACCAATGGCATTAGCATTTTTGTTTATGATCCATTGGAGAGATCAAGAACTCAAGATTGATCCAAGAGAGAGGGAAAAGGAGGAGGAAGAAACAATATGGTAATATATAATTACATTGTTTTGTATGAGGTTAATCACTTTGAACAGTGCGGTGCAGAGTTTGCAGACACTAGCTAACTTAACTTAATTACTGCCCGTATTCGGACTGAACTCTACTGAGAAATCCCTACTTCTGTTGGTCAGCTTCTTGCAACCTATGTAGATTTCTGAACTGT ] [+] EMBL AA753145 [ AAAAGGAAGAAGAA NAACAATATGGTAATATATAATTACATTGTTTTGTATGANGTTAATCACTTTGANCAGTGCGGTGCACAGTTTGCAGACACTAGCTAACTTAACTTAATTACTGCCCGTATTCGGACTGAACTCTACTGAGAAATCCCTACTTCTGTTGGTCAGCTTCTaaaaa ] [-] EMBL AK071198 [ AATTACATTGTTTTGTATGAGGTTAATCACTTTGAACAGTGCGGTGCAGAGTTTGCAGACACTAGCTAACTTAACTTAATTACTGCCCGTATTCGGACTGAACTCTACTGAGAAATCCCTACTTCTGTTGGTCAGCTTCTTGCAACCTATGTAGATTTCTGAACTGTTTCTTCAGCCAATCCAGTACTTTGATTCGACAGAGAGCTCATTCTACTGATTTGGCTCACCAATTTCTTAATTAGACAGCAAACCAAAAAAAAATGCTTATACATCATCATATAACTTTGGCCGGTTAAGCTGTTCGAACTTTTCCTGAAGATCTTCATGGTTGCCTCCAACAAGCTTATCAATCTCCTCATTGTTTTTCATGAAGATGAACGTTGGGGTTGCACGCACATCGTATTGCGTCACCAGCTCCGGCATTTCGTCTACATCCACGGACACGAAAACAATGTCAGGATACTTCAGTGAAAGTTCAGCGAATAGAGGGGCAGCATTCCTACACGGAGTGCACCAAATTGCACTGAATTTTAGCACAACTGTTTTGCCATGCTCAGCTACTTCTTCCATTGTATTGTCCCAATTCTTTTGATCAGTTACCAAAGTCACATTTCCGCCACTGTAGTCCAGGTGCTCCTCGGCGTCTACAGTGCTGCTGCCACAGCAACCCATCGACTTGAGAAAATTCGTCAAGATGCAAGTGTCCTCTGCTCCACTCTGCAAGAGCAAAAGGGCAAGAAAAGTTTGGCTCGCCGTCTGCTTGGTTCTGCGCCGAGCACGTCGGCCGTGCGTCGACGGCGGCGGCGGCGGCCCCCGGCGGAGGGGTGGGTGGCACGG] consensusID : consensus_8557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [GGTGGGTGAAACAAGGTTGATGCGGCANCTGGTGAACTCCCTGAANCGCATCCACGGCACCGGCATCGTCCACCGCGACATCAANCCGTCCAACCTCGTCNTCNCCCGGCGGGGGCAGGTNAAACTCATCCANTTCCGCGCCGCCACCGAACTCCGCATCGGCAAAAANTACNTCCCNANCGCCCCTCCTCGANCCGGANTACTGCCCGCCTGAACTCTACNTCCTCCCCCAAGAAAANCCCCANCCGCCCNCCNAACCCATCNCCCCATCCTCTCCCCNATCCTC] [+] EMBL BE228588 [GGTGGGTGAAACAAGGTTGATGCGGCANCTGGTGAACTCCCTGAANCGCATCCACGGCACCGGCATCGTCCACCGCGACATCAANCCGTCCAACCTCGTCNTCNCCCGGCGGGGGCAGGTNAAACTCATCCANTTCCGCGCCGCCACCGAACTCCGCATCGGCAAAAANTACNTCCCNANCGCCCCTCCTCGANCCGGANTACTGCCCGCCTGAACTCTACNTCCTCCCCCAAGAAAANCCCCANCCGCCCNCCNAACCCATCNCCCCATCCTCTCCCCNATCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8557#0 TCTCGCTGACGAGGCTGGAGCTGGACGAGAGGTACAAGGAGAACGTGATACTGAAGAAGA 60 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 TCAAGGTGGGGACGGCGGGGGCGAAGGAGTGCGGCGACTACGAGGAGTGGTTCAACTACC 120 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 GGGTGGCAAGGGCGGCGCCGGAGTCGTGCGCCGAGTTCCTCGGCAGCTTCGTCGCCGACA 180 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 AGACCAAGTCCGAGTTCGTCAAGGGCGGCAAATGGCTCGTCTGGAAATTCGAGGGTGACC 240 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 GGACGCTGGGCAACTACATGAGCGACCGCAACTTCCCCTTCAACCTGGAGGGCCTCATGT 300 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 TCGGGCGCGCCGTGCGGGGGCTCGACGACGGCAGCCGCGCCGCGCTGGTGG-TGAAGCAG 359 consensus_8557#1 ----------------------------------------------GGTGGGTGAAACAA 14 ***** **** ** consensus_8557#0 G--TGATGCGGCAGCTGGTGACCTCCCTGAAGCGCATCCACGGCACCGGCATCGTCCACC 417 consensus_8557#1 GGTTGATGCGGCANCTGGTGAACTCCCTGAANCGCATCCACGGCACCGGCATCGTCCACC 74 * ********** ******* ********* **************************** consensus_8557#0 GCGACATCAAGCCGTCCAACCTCGTCGTCACCCGGCGGGGGCAGGTGAAGCTCATCGACT 477 consensus_8557#1 GCGACATCAANCCGTCCAACCTCGTCNTCNCCCGGCGGGGGCAGGTNAAACTCATCCANT 134 ********** *************** ** **************** ** ****** * * consensus_8557#0 TCGGCGCCGCCACCGACCTCCGCATCGGCAAGAACTACGTCCCCGACCGCGCCCTCCTCG 537 consensus_8557#1 TCCGCGCCGCCACCGAACTCCGCATCGGCAAAAANTACNTCCCN-ANCGC-CCCTCCTCG 192 ** ************* ************** ** *** **** * *** ********* consensus_8557#0 ACCCGGACTACTGCCCGCCTGAGCTCTACGTCCTCCCCGAGGAGACGCCCCAGCCGCCCG 597 consensus_8557#1 ANCCGGANTACTGCCCGCCTGAACTCTACNTCCTCCCCCAAGAAAANCCCCANCCGCCCN 252 * ***** ************** ****** ******** * ** * ***** ****** consensus_8557#0 CCGAGCCCATCGCCGCCATCCTCTCCCCGATCCTCTGGCAGATTAACAGCCCGGACCTGT 657 consensus_8557#1 CCNAACCCATCNCC-CCATCCTCTCCCCNATCCTC------------------------- 286 ** * ****** ** ************* ****** consensus_8557#0 TCGACATGTACTCGGCGGGGATCGTGCTGATGCAGATGGCGTCGCCGATGCTGAGGTCGC 717 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 CGTCGGGGCTCAAGAACTTCAACGCCGAGCTTCAGGCCGCCGGGTACGACCTCAACCGGT 777 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 GGCGGGAGACCACGCGGCGGAGACCCGACCTGCAGATCCTCGACCTCGACTCCGGCAGGG 837 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 GGTGGGACCTCGCCACCAAGCTCATCTCGCAGCGCGGCGCCGACAAGCGCGGCCGCCTCA 897 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 CCGCCGCCGCCGCCCTGCGCCACCCTTACTTCCTCCTCGGCGGCGACCAGGCCGCCGCCG 957 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 TCTTGTCCAAGCTGTCACTCAGCAAGTAGGTTATACAAAACAACTCAATGCACAAAATTA 1017 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 AGAACACATGCAGTGATCAGGTCACCACTCACCAATGGCATTAGCATTTTTGTTTATGAT 1077 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 CCATTGGAGAGATCAAGAACTCAAGATTGATCCAAGAGAGAGGGAAAAGGAGGAGGAAGA 1137 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 AACAATATGGTAATATATAATTACATTGTTTTGTATGAGGTTAATCACTTTGAACAGTGC 1197 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 GGTGCAGAGTTTGCAGACACTAGCTAACTTAACTTAATTACTGCCCGTATTCGGACTGAA 1257 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 CTCTACTGAGAAATCCCTACTTCTGTTGGTCAGCTTCTTGCAACCTATGTAGATTTCTGA 1317 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 ACTGTTTCTTCAGCCAATCCAGTACTTTGATTCGACAGAGAGCTCATTCTACTGATTTGG 1377 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 CTCACCAATTTCTTAATTAGACAGCAAACCAAAAAAAAATGCTTATACATCATCATATAA 1437 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 CTTTGGCCGGTTAAGCTGTTCGAACTTTTCCTGAAGATCTTCATGGTTGCCTCCAACAAG 1497 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 CTTATCAATCTCCTCATTGTTTTTCATGAAGATGAACGTTGGGGTTGCACGCACATCGTA 1557 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 TTGCGTCACCAGCTCCGGCATTTCGTCTACATCCACGGACACGAAAACAATGTCAGGATA 1617 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 CTTCAGTGAAAGTTCAGCGAATAGAGGGGCAGCATTCCTACACGGAGTGCACCAAATTGC 1677 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 ACTGAATTTTAGCACAACTGTTTTGCCATGCTCAGCTACTTCTTCCATTGTATTGTCCCA 1737 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 ATTCTTTTGATCAGTTACCAAAGTCACATTTCCGCCACTGTAGTCCAGGTGCTCCTCGGC 1797 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 GTCTACAGTGCTGCTGCCACAGCAACCCATCGACTTGAGAAAATTCGTCAAGATGCAAGT 1857 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 GTCCTCTGCTCCACTCTGCAAGAGCAAAAGGGCAAGAAAAGTTTGGCTCGCCGTCTGCTT 1917 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 GGTTCTGCGCCGAGCACGTCGGCCGTGCGTCGACGGCGGCGGCGGCGGCCCCCGGCGGAG 1977 consensus_8557#1 ------------------------------------------------------------ consensus_8557#0 GGGTGGGTGGCACGG 1992 consensus_8557#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||