Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8565 cluster # 8565       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8565#0 length = 844 sequences # 3  
consensus_8565#1 length = 703 sequences # 1  
consensus_8565#2 length = 345 sequences # 1  

consensusID : consensus_8565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 844
fasta sequence
                              [CCTCTCCCTCTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCCCATCTCCCTCTCCCTCTCCCTCCTCCTTGGCAGCGGCGAGCGCAGACGGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGAGGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAGGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTACCCTTGCAGATCCAGCAGAGGGCCGGTGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGTGAAGGTAACGGACGGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCGGCTAGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAATCCTCGTAGTAGTAGGGTGTGAATAGTTTGTTCCTACTTATATAAGTTAAATTAGACTTGCAAAAAAAAAA]

[+] EMBL AK069208             [CCTCTCCCTCTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCCCATCTCCCTCTCCCTCTCCCTCCTCCTTGGCAGCGGCGAGCGCAGACGGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGAGGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAGGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTACCCTTGCAGATCCAGCAGAGGGCCGGTGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGTGAAGGTAACGGACGGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCGGCTAGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAATCCTCGTAGTA                                                            ]
[+] EMBL AU077806             [         CTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCCCATCTCCCTCTCCCTCTCCCTCCTCCTTGGCAGCGGCGAGCGCAGACGGCGGCGGCAGACGGCGCGGCGCG GGCCCCNCCCCNCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGAGGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGGCGCGGGNCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAGGCGGCGCGCGGCCCCTCCCTTNCCCCCTCGGCTCCCCTTGCAGATCCAGCAag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU077807             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGGGCGACGGCGGCGCGCCTCGGCTNGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGNAAAATCCTCGTAGTAGTAGGGTGTGAATAGTTTGTTCCTACTTATATAAGTTAAATTAGACTTGCAAAAAAAAAA]


>consensus_8565#0 CCTCTCCCTCTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCC CATCTCCCTCTCCCTCTCCCTCCTCCTTGGCAGCGGCGAGCGCAGACGGCGGCGGCAGAC GGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGAGGC ATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGGCGC GCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAG GCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTACCCTTGCAGATCCAGCAGAGGGCCGG TGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGCAGCTCCTCCT CTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGTGAA GGTAACGGACGGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCGGCT AGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTT TTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGAT TTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTT CCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAATCCTCGT AGTAGTAGGGTGTGAATAGTTTGTTCCTACTTATATAAGTTAAATTAGACTTGCAAAAAA AAAA



consensusID : consensus_8565#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence
                              [GCANGATGCCCGCTTTAGTAACCCTCTCCCTCCTCNTNCCGCAGCGGCAAAACGCAGACTTGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCNGCGCCGGTGGAGGGGAAGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTANGCGGCGGCGGCGGACATCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGANGCATGGTGGCGACGGGCGCANGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTCCCCTTGCAGATCCAGCANANGGCCGGTGATGCATGGGGGCGGCGGGCGCANGCTGTTTTATTACTGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACNGGAGCTCGCGGGCAGCGGATTCNGCGTCNGTGAANGTANCGGACGCGGATCCGTCCCNGCAACCACGGGGGCNACGCGGCCGCCTCNGCTAAGGTGGCCGTGCCTGCGCTGCNGCTGGATTAGGTTAAGGTTTGTTTTTTCTNTTTTTTTGTTTCNATTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCCAAAATCCATTTTCGCCTTTCGGGTTCCTTCACTCGCACAAAAAAATCNTNCATTTTTCCCANANNATTTCTTCCAAACGGTCCAATCTTCCNCCCCCAAAAATCCAA]

[+] EMBL AA752965             [GCANGATGCCCGCTTTAGTAACCCTCTCCCTCCTCNTNCCGCAGCGGCAAAACGCAGACTTGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCNGCGCCGGTGGAGGGGAAGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTANGCGGCGGCGGCGGACATCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGANGCATGGTGGCGACGGGCGCANGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTCCCCTTGCAGATCCAGCANANGGCCGGTGATGCATGGGGGCGGCGGGCGCANGCTGTTTTATTACTGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACNGGAGCTCGCGGGCAGCGGATTCNGCGTCNGTGAANGTANCGGACGCGGATCCGTCCCNGCAACCACGGGGGCNACGCGGCCGCCTCNGCTAAGGTGGCCGTGCCTGCGCTGCNGCTGGATTAGGTTAAGGTTTGTTTTTTCTNTTTTTTTGTTTCNATTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCCAAAATCCATTTTCGCCTTTCGGGTTCCTTCACTCGCACAAAAAAATCNTNCATTTTTCCCANANNATTTCTTCCAAACGGTCCAATCTTCCNCCCCCAAAAATCCAA]


>consensus_8565#1 GCANGATGCCCGCTTTAGTAACCCTCTCCCTCCTCNTNCCGCAGCGGCAAAACGCAGACT TGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCNGCGCCG GTGGAGGGGAAGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTANGCGGCGGCGGCG GACATCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGANGCATGGTG GCGACGGGCGCANGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTCCCCTTGCAGATCC AGCANANGGCCGGTGATGCATGGGGGCGGCGGGCGCANGCTGTTTTATTACTGGACCCGC GCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACNGGAGCTCGCGGGCAGCGGATTC NGCGTCNGTGAANGTANCGGACGCGGATCCGTCCCNGCAACCACGGGGGCNACGCGGCCG CCTCNGCTAAGGTGGCCGTGCCTGCGCTGCNGCTGGATTAGGTTAAGGTTTGTTTTTTCT NTTTTTTTGTTTCNATTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCCAAAA TCCATTTTCGCCTTTCGGGTTCCTTCACTCGCACAAAAAAATCNTNCATTTTTCCCANAN NATTTCTTCCAAACGGTCCAATCTTCCNCCCCCAAAAATCCAA



consensusID : consensus_8565#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence
                              [CCCGTTTAAAAACCGCGGGCAGCGGCCCCGGCGTCAGTGAAAGTNTTTGACGGCGGATCCGTCNCCGGCAACCACGGGGGCNACCGCNGCGCGCCTCGGCTAAGGTGGCGGTGCCNGCGGCNGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCNATNTATTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAANAATCGTGCATTTTCGCAGACNATNCTCCCAAACNGTCNAATCTTCCNCACGCGAAAANCGATTTCNTNNTNTTTGAAAAATCCCCNTNCCNA]

[+] EMBL AA753327             [CCCGTTTAAAAACCGCGGGCAGCGGCCCCGGCGTCAGTGAAAGTNTTTGACGGCGGATCCGTCNCCGGCAACCACGGGGGCNACCGCNGCGCGCCTCGGCTAAGGTGGCGGTGCCNGCGGCNGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCNATNTATTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAANAATCGTGCATTTTCGCAGACNATNCTCCCAAACNGTCNAATCTTCCNCACGCGAAAANCGATTTCNTNNTNTTTGAAAAATCCCCNTNCCNA]


>consensus_8565#2 CCCGTTTAAAAACCGCGGGCAGCGGCCCCGGCGTCAGTGAAAGTNTTTGACGGCGGATCC GTCNCCGGCAACCACGGGGGCNACCGCNGCGCGCCTCGGCTAAGGTGGCGGTGCCNGCGG CNGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCNATNTATTATTT TCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTC ACTCGCACAAAANAATCGTGCATTTTCGCAGACNATNCTCCCAAACNGTCNAATCTTCCN CACGCGAAAANCGATTTCNTNNTNTTTGAAAAATCCCCNTNCCNA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8565#0      CCTCTCCCTCTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCC 60
consensus_8565#1      --------------------------------------------------GCANGATGCC 10
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      CATCTCCCTCTCCCTCTCCCTCCTCCTTG-GCAGCGGCGAG-CGCAGACG-GCGGCGGCA 117
consensus_8565#1      CGCTTTAGTAACCCTCTCCCTCCTCNTNCCGCAGCGGCAAAACGCAGACTTGCGGCGGCA 70
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      GACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGA 177
consensus_8565#1      GACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCNGCGCCGGTGGAGGGGA 130
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      GGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGG 237
consensus_8565#1      AGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTANGCGGCGGCGGCGGACATCGCGG 190
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      CGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCG 297
consensus_8565#1      CGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGANGCATGGTGGCGACGGGCG 250
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      CAGGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTACCCTTGCAGATCCAGCAGAGGGC 357
consensus_8565#1      CANGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTCCCCTTGCAGATCCAGCANANGGC 310
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      CGGTGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGCAGCTCCT 417
consensus_8565#1      CGGTGATGCATGGGGGCGGCGGGCGCANGCTGTTTT-ATTACTGGACCCGCGCAGCTCCT 369
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      CCTCTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGT 477
consensus_8565#1      CCTCTCCCCTCTCCTCCCCGGCAGCGACNGGAGCTCGCGGGCAGCGGATTCNGCGTCNGT 429
consensus_8565#2      ----------------------CCCGTTTAAAAACCGCGGGCAGCGGCCCCGGCGTCAGT 38
                                              **     *   ************   * ***** **

consensus_8565#0      GAAGGTAACGGACGGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCG 537
consensus_8565#1      GAANGTANCGGACG-CGGATCCGTC-CCNGCAACCACGGGGGCNACG-CGGC-CGCCTCN 485
consensus_8565#2      GAAAGTNTTTGACGGCGGATCCGTCNCCGGCAACCACGGGGGCNACCGCNGCGCGCCTCG 98
                      *** **    **** ********** ** ************** **  * ** ****** 

consensus_8565#0      GCTAGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTT 597
consensus_8565#1      GCTAAGGTGGCCGTGCCTGCG-CTGCNGCTGGATTAGG-TTAAGGTTTGTTTTTTCTNTT 543
consensus_8565#2      GCTAAGGTGGCGGTGCCNGCGGCNGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTT 158
                      **** ****** ***** *** * ** *********** *** ************** **

consensus_8565#0      TTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATC 657
consensus_8565#1      TTTTTGTTTCNATTTTT-ATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCCAAAATC 602
consensus_8565#2      TTTTTGTTTCNATNTATTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATC 218
                      ********** ** * * *********************************** ******

consensus_8565#0      GATTTTCGCGTGCGGG--TGCGTCACTCGCACAAAAAAATCGTGCATTTT-CGCAGACGA 714
consensus_8565#1      CATTTTCGCCTTTCGGGTTCCTTCACTCGCACAAAAAAATCNTNCATTTTTCCCANANNA 662
consensus_8565#2      GATTTTCGCGTGCGGG--TGCGTCACTCGCACAAAANAATCGTGCATTTT-CGCAGACNA 275
                       ******** *   **  * * ************** **** * ****** * ** *  *

consensus_8565#0      TTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAAT 774
consensus_8565#1      TTTCTTCCAAACGGTCCAATCTTCCNCCCCCAAAAATCCAA------------------- 703
consensus_8565#2      TN-CTCCCAAACNGTCNAATCTTCCNCACGCGAAAANCGATTTCNTNNTNTTTGAAAAAT 334
                      *  ** *** ** *** ******** * * * **** * *                    

consensus_8565#0      CCTCGTAGTAGTAGGGTGTGAATAGTTTGTTCCTACTTATATAAGTTAAATTAGACTTGC 834
consensus_8565#1      ------------------------------------------------------------
consensus_8565#2      CCCCNTNCCNA------------------------------------------------- 345
                                                                                  

consensus_8565#0      AAAAAAAAAA 844
consensus_8565#1      ----------
consensus_8565#2      ----------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)