These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1898 fasta sequence [AAACGAGAAGCTCCAAGCTCGCAATAATTCACCAAGAATCGCACCACTTTTCACCTTTTCTT-CTCCTCCTCCATTTCCATCCATGGCG-ACGCTGCTGCTGCTGCTGCACACGGCGCAACAGTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGCGGCGAGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTCAATGGCGGCGACCGGCGGCGGCGGCGGCGGCGGCGAGCAGGAGGCTGACAGGGTGGCGCGGCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTCCGCCGGCTACGTCGGCGTCGACGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCCGGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGTTGCTCTTCCATTGGCTATGGTGCTGCATCAGAGCTAGGGCCTCTCAGAGTTGCAAGACAAGGAGCAGCACTAGAGTTCAACCAGTATGGCTGGAACAAAGAGGCTAACCTCCTGTTCTTGGAATCTCCTGTTGGGGTCGGCTTCTCCTACACCAACACATCCTCTGACCTCTCCAATCTTAATGATGATTTTGTAGCTGAGGATGCTTATAGTTTCCTGGTGAACTGGTTCAAGAGATTTCCTCAGTACAAGGACAATGAGTTCTACATCTCAGGGGAGAGCTATGCAGGTCACTATGTGCCCCAACTTGCTGACCTTGTCTATGAGAGGAACAAAGACAAAAGGGCCAGCACATATATCAACCTCAAGGGGTTCATTGTAGGCAACCCTCTCACCGATGATTACTATGATTCAAAAGGTTTGGCTGAGTATGCCTGGAGCCATGCAATTGTGTCGGATCAAGTTTACGAGCGCATCAAGAAAACTTGCAACTTCAAGAACTCCAACTGGACTGACGATTGCAATGCTGCAATGAACATAATCTTCAGTCAGTACAATCAGATAGATATATACAACATTTATGCCCCAAAGTGCCTTCTAAACAGTACTTCAGCATCTTCACCTGATCGTGCATTCTTCGCAAATAACCAGGAACAATTCAGGTGGAGAATCAAGATGTTTTCAGGCTATGATCCATGCTACTCATCCTATGCTGAGGACTACTTCAATAAGCATGATGTGCAAGAAGCATTCCA-TGCAAA-TG-CCA-GTGGACTGC--TTCCAGGG-AAGTGGCAAGTTTGCAGTGACCAAATCCTCAACTCTTACAATTTCTCAGTACTTTCCATCCTACCTATATACTCCAAGCTCATCAAAGCAGGGCTGAGAGTTTGGCTCTACAGCGGTGATGCTGACGGCAGGGTCCCGGTTATCAGTTCTCGGTACTGCGTGGAAGCACTCGGCCTACCGATCAAGACCGATTGGCAATCTTGGTACCTTGACAAGCAGGTTGCTGGGAGGTTTGTGGAGTACCATGGAATGACAATGGTGACTGTCAGAGGGGCAGGTCACCTGGTTCCCCTCAACAAACCTGCTGAAGGGCTTATGCTGATAAATGCATTCCTTCATGGTGAGAAGCTTCCGACAAGCAGATGATATGCGCTGCTGATGAAGCTTTGGAGGTACAAGATGGCATGAGATACAGGCATGGACATCAATTTTCATTGAAAGGCGCCAATCGGATAGATTTGATATGGTAGTATCCAAATCAATTTCAAGTGCGCCGTAAATTCAGTACTCTGTTGAACATTCTTTTAAATCTGTTGTTGACTATGACTTTCTTCTTTTGTGTTTTTTTTACTCACCTTTTCCATATTATAAGTCGTTTTGGGTTTGTCCTATAATCAAACTTTTTAAGTCTGACAGTTTATAGAAAAATAAAGTAACA] [+] EMBL AK106800 [AAACGAGAAGCTCCAAGCTCGCAATAATTCACCAAGAATCGCACCACTTTTCACCTTTTCTT CTCCTCCTCCATTTCCATCCATGGCG ACGCTGCTGCTGCTGCTGCACACGGCGCAACAGTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGCGGCGAGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTCAATGGCGGCGACCGGCGGCGGCGGCGGCGGCGGCGAGCAGGAGGCTGACAGGGTGGCGCGGCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTCCGCCGGCTACGTCGGCGTCGACGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCCGGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGTTGCTCTTCCATTGGCTATGGTGCTGCATCAGAGCTAGGGCCTCTCAGAGTTGCAAGACAAGGAGCAGCACTAGAGTTCAACCAGTATGGCTGGAACAAAGAGGCTAACCTCCTGTTCTTGGAATCTCCTGTTGGGGTCGGCTTCTCCTACACCAACACATCCTCTGACCTCTCCAATCTTAATGATGATTTTGTAGCTGAGGATGCTTATAGTTTCCTGGTGAACTGGTTCAAGAGATTTCCTCAGTACAAGGACAATGAGTTCTACATCTCAGGGGAGAGCTATGCAGGTCACTATGTGCCCCAACTTGCTGACCTTGTCTATGAGAGGAACAAAGACAAAAGGGCCAGCACATATATCAACCTCAAGGGGTTCATTGTAGGCAACCCTCTCACCGATGATTACTATGATTCAAAAGGTTTGGCTGAGTATGCCTGGAGCCATGCAATTGTGTCGGATCAAGTTTACGAGCGCATCAAGAAAACTTGCAACTTCAAGAACTCCAACTGGACTGACGATTGCAATGCTGCAATGAACATAATCTTCAGTCAGTACAATCAGATAGATATATACAACATTTATGCCCCAAAGTGCCTTCTAAACAGTACTTCAGCATCTTCACCTGATCGTGCATTCTTCGCAAATAACCAGGAACAATTCAGGTGGAGAATCAAGATGTTTTCAGGCTATGATCCATGCTACTCATCCTATGCTGAGGACTACTTCAATAAGCATGATGTGCAAGAAGCATTCCA TGCAAA TG CCA GTGGACTGC TTCCAGGG AAGTGGCAAGTTTGCAGTGACCAAATCCTCAACTCTTACAATTTCTCAGTACTTTCCATCCTACCTATATACTCCAAGCTCATCAAAGCAGGGCTGAGAGTTTGGCTCTACAGCGGTGATGCTGACGGCAGGGTCCCGGTTATCAGTTCTCGGTACTGCGTGGAAGCACTCGGCCTACCGATCAAGACCGATTGGCAATCTTGGTACCTTGACAAGCAGGTTGCTGGGAGGTTTGTGGAGTACCATGGAATGACAATGGTGACTGTCAGAGGGGCAGGTCACCTGGTTCCCCTCAACAAACCTGCTGAAGGGCTTATGCTGATAAATGCATTCCTTCATGGTGAGAAGCTTCCGACAAGCAGATGATATGCGCTGCTGATGAAGCTTTGGAGGTACAAGATGGCATGAGATACAGGCATGGACATCAATTTTCATTGAAAGGCGCCAATCGGATAGATTTGATATGGTAGTATCCAAATCAATTTCAAGTGCGCCGTAAATTCAGTACTCTGTTGAACATTCTTTTAAATCTGTTGTTGACTATGACTTTCTTCTTTTGTGTT ] [+] EMBL CB632948 [ TTTACCTTTTTTTACTCCTCCTCCATTTCCATCCACGGCGTACGCTGCTGCTGCTGCTGCACACGGCGCAACAGTGTGCTATAGCTAGTGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGCGGCGTGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTCAATGGCGGCGAC CGGCGGCGGCGGCGGCGAGCAGGAGGCTGACAGGGTGGCGCGGCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTTCGCCGGCTACGTCGGCGTCGACGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCCGGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGTTGCTCTTCCATTGGCTATGGTGCTGCATCAGAGCTAGGGCCTCTCAGAGTTGCAAGACAAGGAGCAGCACTAGAGTTCAACCAGTATGGCTGGAACAAAGAGGCTAACCTCCTGTTCTTGGAGTCTCCTGTTGGGGTCGGCTTCTCCTACACCAACACATCCTCTGACCTCTCCAATCTTAATGATGATTTTGTAGCTGAGGATGCTTATAGTTTCCTGGTGAACTGGTTCAAGAGATTTCCTCAGTACAAGGACAAT ] [-] EMBL CB632949 [ CAATTCAGGTGGAGAATCAAGATGTTTTCAGGCTATGATCCATGCTACTCATCCTATGCTGAGGACTACTTCAATAAGCATGATGTGCAAGAAGCATTCCA TGCAAA TG CCA GTGGACTGC TTCCAGGG AAGTGGCAAGTTTGCAGTGACCAAATCCTCAACTCTTACAATTTCTCAGTACTTTCCATCCTACCTATATACTCCAAGCTCATCAAAGCAGGGCTGAGAGTTTGGCTCTACAGCGGTGATGCTGACGGCAGGGTCCCGGTTATCAGTTCTCGGTACTGCGTGGAAGCACTCGGCCTACCGATCAAGACCGATTGGCAATCTTGGTACCTTGACAAGCAGGTTGCTGGGAGGTTTGTGGAGTACCATGGAATGACAATGGTGACTGTCAGAGGGGCAGGTCACCTGGTTCCCCTCAACAAACCTGCTGAAGGGCTTATGCTGATAAATGCATTCCTTCATGGTGAGAAGCTTCCGACAAGCAGATGATATGCGCTGCTGATGAAGCTTTGGAGGTACAAGATGGCATGAGATACAGGCATGGACATCAATTTTCATTGAAAGGCGCCAATCGGATAGATTTGATATGGTAGTATCCAAATCAATTTCAAGTGCGCCGTAAATTCAGTACTCTGTTGAACATTCTTTTAAATCTGTTGTTGACTATGACTTTCTTCTTTTGTGTTTTTTTTACTCACCTTTTCCATATTATAAGTCGTTTTGGGTTTGTCCTATAATCAAACTTTTTAAGTCTGACAGTTTATAGAAAAATAAAGTAACA] [+] EMBL BM418686 [ TTCCAGTGCAAANTGCCCACGTGGACTGCCTTTCCAGGGAAAGTGGCAAGTTTNCAGTGACCCAATCCTCAACTCTTACAATTTCTCAGTACTTTCCATCCTACCTATATACTCCAAGCTCATCAAAGCAGGGCTGAGAGTTTGGCTCTACAGCGGTGATGCTGACGGCAGGGTCCCGGTTATCAGTTCTCGGTACTGCGTGGAAGCACTCGGCCTACCGATCAAGACCGATTGGCAATCTTGGTACCTTGACAAGCAGGTTGCTGGGAGGTTTGTGGAGTACCATGGAATGACAATGGTGACTGTCAGAGGGGCAGGTCACCTGGTTCCCCTCAACAAACCTGCTGAAGGGCTTATGCTGATAAATGCATTCCTTCATGGTGAGAAGCTTCCGACAAGCAGATGATATGCGCTGCTGATGAAGCTTTGGAGGTACAAGATGGCATGAGATACAGGCATGGACATCAATTTTCATTGAAAGGCGCC ATCGGATAGATTTGATATGGTAGTATCCAAATCAATTTCAAGTGCGCCGTAAATTCAGTACTCTGTTGAACATTCTTTTNCATCTGTTGTTGACTATGACTTTaaaaaaa ] consensusID : consensus_8566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [TCACCAAGAATCGCACCACTTTTCACCTTTTCTTCTCCTCCTCCATTTCCATCCATGGCGACNNCTCTGCTGCTGCTGCACACGGCGCAACAGTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTCAATGGCGGCAACCGGCGGCGGCGGCGGCAAGCAGGAGGCTGACAGGGTGGCGCGGCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTTCGCCGGCTACGTCGGCGTCGACGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCCGGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGGTGCTCTTCCATTGGCTATGGGGCTGCATCAGAGCTAGGGCCTCTGAGAGTTGCGAGACNAGGAGCAGGACTAGAGGTTACTAAGTATGGCTGGAACAAAGAGGCTAACGCTGCTGTTGTTGGAGCCTGCTGGTGGGGGCGGGTTGTCGCACACCGACGCATCGGGTGGACTCGGGCGTGGTGA] [+] EMBL CA757073 [TCACCAAGAATCGCACCACTTTTCACCTTTTCTTCTCCTCCTCCATTTCCATCCATGGCGACNNCTCTGCTGCTGCTGCACACGGCGCAACAGTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTCAATGGCGGCAACCGGCGGCGGCGGCGGCAAGCAGGAGGCTGACAGGGTGGCGCGGCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTTCGCCGGCTACGTCGGCGTCGACGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCCGGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGGTGCTCTTCCATTGGCTATGGGGCTGCATCAGAGCTAGGGCCTCTGAGAGTTGCGAGACNAGGAGCAGGACTAGAGGTTACTAAGTATGGCTGGAACAAAGAGGCTAACGCTGCTGTTGTTGGAGCCTGCTGGTGGGGGCGGGTTGTCGCACACCGACGCATCGGGTGGACTCGGGCGTGGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8566#0 AAACGAGAAGCTCCAAGCTCGCAATAATTCACCAAGAATCGCACCACTTTTCACCTTTTC 60 consensus_8566#1 ----------------------------TCACCAAGAATCGCACCACTTTTCACCTTTTC 32 ******************************** consensus_8566#0 TTCTCCTCCTCCATTTCCATCCATGGCGACGCTGCTGCTGCTGCTGCACACGGCGCAACA 120 consensus_8566#1 TTCTCCTCCTCCATTTCCATCCATGGCGACNNCTCTGCTGCTGCTGCACACGGCGCAACA 92 ****************************** ************************** consensus_8566#0 GTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGC 180 consensus_8566#1 GTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGC 152 ************************************************************ consensus_8566#0 GGCG------AGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTC 234 consensus_8566#1 GGCGGCGGCGAGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTC 212 **** ************************************************** consensus_8566#0 AATGGCGGCGACCGGCGGCGGCGGCGGCGGCGGCGAGCAGGAGGCTGACAGGGTGGCGCG 294 consensus_8566#1 AATGGCGGCAACCGGCGGCGGCGGCG------GCAAGCAGGAGGCTGACAGGGTGGCGCG 266 ********* **************** ** ************************* consensus_8566#0 GCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTCCGCCGGCTACGTCGGCGTCGA 354 consensus_8566#1 GCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTTCGCCGGCTACGTCGGCGTCGA 326 ************************************** ********************* consensus_8566#0 CGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCC 414 consensus_8566#1 CGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCC 386 ************************************************************ consensus_8566#0 GGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGTTGCTCTTCCATTGGCTA 474 consensus_8566#1 GGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGGTGCTCTTCCATTGGCTA 446 ****************************************** ***************** consensus_8566#0 TGGTGCTGCATCAGAGCTAGGGCCTCTCAGAGTTGCAAGACAAGGAGCAGCACTAGAGTT 534 consensus_8566#1 TGGGGCTGCATCAGAGCTAGGGCCTCTGAGAGTTGCGAGACNAGGAGCAGGACTAGAGGT 506 *** *********************** ******** **** ******** ******* * consensus_8566#0 CAACCAGTATGGCTGGAACAAAGAGGCTAAC-CTCCTGTTCTTGGAATCTCCTGTTGGGG 593 consensus_8566#1 TACTAAGTATGGCTGGAACAAAGAGGCTAACGCTGCTGTTGTTGGAGCCTGCTGGTGGGG 566 * ************************** ** ***** ***** ** *** ***** consensus_8566#0 TCGGCTTCTCCTACACCAACACATCCTCTGACCTCTCCAATCTTAATGATGATTTTGTAG 653 consensus_8566#1 GCGGGTTGTCGCACACCGACGCATCGGGTGGACTC---GGGCGTGGTGA----------- 612 *** ** ** ***** ** **** ** *** * * *** consensus_8566#0 CTGAGGATGCTTATAGTTTCCTGGTGAACTGGTTCAAGAGATTTCCTCAGTACAAGGACA 713 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 ATGAGTTCTACATCTCAGGGGAGAGCTATGCAGGTCACTATGTGCCCCAACTTGCTGACC 773 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 TTGTCTATGAGAGGAACAAAGACAAAAGGGCCAGCACATATATCAACCTCAAGGGGTTCA 833 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 TTGTAGGCAACCCTCTCACCGATGATTACTATGATTCAAAAGGTTTGGCTGAGTATGCCT 893 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 GGAGCCATGCAATTGTGTCGGATCAAGTTTACGAGCGCATCAAGAAAACTTGCAACTTCA 953 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 AGAACTCCAACTGGACTGACGATTGCAATGCTGCAATGAACATAATCTTCAGTCAGTACA 1013 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 ATCAGATAGATATATACAACATTTATGCCCCAAAGTGCCTTCTAAACAGTACTTCAGCAT 1073 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 CTTCACCTGATCGTGCATTCTTCGCAAATAACCAGGAACAATTCAGGTGGAGAATCAAGA 1133 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 TGTTTTCAGGCTATGATCCATGCTACTCATCCTATGCTGAGGACTACTTCAATAAGCATG 1193 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 ATGTGCAAGAAGCATTCCATGCAAATGCCAGTGGACTGCTTCCAGGGAAGTGGCAAGTTT 1253 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 GCAGTGACCAAATCCTCAACTCTTACAATTTCTCAGTACTTTCCATCCTACCTATATACT 1313 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 CCAAGCTCATCAAAGCAGGGCTGAGAGTTTGGCTCTACAGCGGTGATGCTGACGGCAGGG 1373 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 TCCCGGTTATCAGTTCTCGGTACTGCGTGGAAGCACTCGGCCTACCGATCAAGACCGATT 1433 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 GGCAATCTTGGTACCTTGACAAGCAGGTTGCTGGGAGGTTTGTGGAGTACCATGGAATGA 1493 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 CAATGGTGACTGTCAGAGGGGCAGGTCACCTGGTTCCCCTCAACAAACCTGCTGAAGGGC 1553 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 TTATGCTGATAAATGCATTCCTTCATGGTGAGAAGCTTCCGACAAGCAGATGATATGCGC 1613 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 TGCTGATGAAGCTTTGGAGGTACAAGATGGCATGAGATACAGGCATGGACATCAATTTTC 1673 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 ATTGAAAGGCGCCAATCGGATAGATTTGATATGGTAGTATCCAAATCAATTTCAAGTGCG 1733 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 CCGTAAATTCAGTACTCTGTTGAACATTCTTTTAAATCTGTTGTTGACTATGACTTTCTT 1793 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 CTTTTGTGTTTTTTTTACTCACCTTTTCCATATTATAAGTCGTTTTGGGTTTGTCCTATA 1853 consensus_8566#1 ------------------------------------------------------------ consensus_8566#0 ATCAAACTTTTTAAGTCTGACAGTTTATAGAAAAATAAAGTAACA 1898 consensus_8566#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||