These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 898 fasta sequence [CATCATCGCCTACTCCCTCTCTCTCTCTAAAACCTCGCTGTCTTTCTCTATCTAGCGGGTCGCGGTGAGTCGTCGTCGTCGTCGCCGGCGATGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCGGGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCGAGGAGCTCGTCGGCCACCCGCTGTTCCAGAACCTCGTCGACCGCACCGGCGGCGGCGGCGGCGGCGGCGCCGCGACCGTCGTCGGCTGCGAGGTCGTGCTGTTCGAGCACCTGCTCTGGATGCTGGAGAACGCCGACCCGCAGCCGGAGTCCCTCGACGAGCTCGTCGAGTACTACGCCTGCTGAGAAAGGCCGCCGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGGCGGCGACGCGCCGGAGTTGGAAGCTTCCAGAAGCTGCGGTAAAATCTTTCGAAAAAAAAAAAATCTGTGTTTTGGTAGGGGTAGAAGTGAAATTTCGGACGCCGGGGTCGAAGTGAAGAGTACGAAGCGGCAGCTAGCG-TTTTTTTTTTACTTAACCCCGGCGTCGGTGCTAATTGGGGAATTTACCATTTGTTACTGTGCTGTTAATTCTCTGATCGTTCATGTATTAGCTATTGGGTTTCTCATTATTTCTTTATTTTGCCCCAAAATAAGATCTATGGGCAAACATGCCCATCGGTCCAATGTACATTCCAGTGTAAAAAATTATCATGTAATTGCCGAG] [+] EMBL AK106714 [CATCATCGCCTACTCCCTCTCTCTCTCTAAAACCTCGCTGTCTTTCTCTATCTAGCGGGTCGCGGTGAGTCGTCGTCGTCGTCGCCGGCGATGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCGGGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCGAGGAGCTCGTCGGCCACCCGCTGTTCCAGAACCTCGTCGACCGCACCGGCGGCGGCGGCGGCGGCGGCGCCGCGACCGTCGTCGGCTGCGAGGTCGTGCTGTTCGAGCACCTGCTCTGGATGCTGGAGAACGCCGACCCGCAGCCGGAGTCCCTCGACGAGCTCGTCGAGTACTACGCCTGCTGAGAAAGGCCGCCGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGGCGGCGACGCGCCGGAGTTGGAAGCTTCCAGAAGCTGCGGTAAAATCTTTCGAAAAAAAAAAAATCTGTGTTTTGGTAGGGGTAGAAGTGAAATTTCGGACGCCGGGGTCGAAGTGAAGAGTACGAAGCGGCAGCTAGCG TTTTTTTTTTACTTAACCCCGGCGTCGGTGCTAATTGGGGAATTTACCATTTGTTACTGTGCTGTTAATTCTCTGATCGTTCATGTATTAGCTATTGGGTTTCTCATTATTTCTTTATTTTGCCCCAAAATAAGATCTATGGGCAAACATGCCCATCGGTCCAATGTACATTCCAGTGTAAAAAATTATCATGTAATTGCCGAG] [+] EMBL OSS3693A [ TACTCCCTCTNTNTCTCTAAAACCTCGCTGTCTTTTTCTATCTAGCGGGTCGCGGTGAGTCGTCGTCGTCGTCGCCGGCNATGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGNAGGTGGCACTCGTCGAGCCGCATCGCGCGGGNNCCGCCGTCGGGGGNGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCGAGGAGCTCGTCGGCCACCCGCTGTTCCANAACC ] [+] EMBL OSS3151A [ TACTCCCTCTCTCTCTCTAAAACCTCGCTGTCTTTCTCTATCTAGCGGGTCGCGGTGAGTCGTCGTCGTCGTCGCCGGCGATGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGNCCCGCCGTCGGGGGGNGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACG ] [+] EMBL AK102438 [ TCTCTATCTAGCGGGTCGCGGTGAGTCGTCGTCGTCGTCGCCGGCGATGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCGGGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCGAGGAGCTCGTCGGCCACCCGCTGTTCCAGAACCTCGTCGACCGCACCGGCGGCGGCGGCGGCGGCGGCGCCGCGACCGTCGTCGGCTGCGAGGTCGTGCTGTTCGAGCACCTGCTCTGGATGCTGGAGAACGCCGACCCGCAGCCGGAGTCCCTCGACGAGCTCGTCGAGTACTACGCCTGCTGAGAAAGGCCGCCGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGGCGGCGACGCGCCGGAGTTGGAAGCTTCCAGAAGCTGCGGTAAAATCTTTCG AAAAAAAAAATCTGTGTTTTGGTAGGGGTAGAAGTGAAATTTCGGACGCCGGGGTCGAAGTGAAGAGTACGAAGCGGCAGCTAGCGTTTTTTTTTTTACTTAACCCCGGCGTCGGTGCTAATTGGGGAATTTACCATTTGTTACTGTGCTGTTAATTCTCTGATCGTTCATGTATTAGCTATTGGGTTTCTCATTATTTCTTTATTTTGCCCCAAAATAAGATCTATGGGCAAACATGCCCATCGGTCCAATGTACATTCCAGTGTAAAAAATTATCATGTAATTGCCGAG] consensusID : consensus_8567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [TCTCTCTNTNCCTCGCTGTNTTTCTCTATNTANCGGGTCGCGGTGAGTCGTCNTCNTCNTCGCCGGCGNTGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCGGGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCTNTTNTNTCNTCGGCCACCCGCTGTTCCANAACCTCGTCNACCGCACCGGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGGCGGCGACCCCCCGGANTTGGAACTTCCANAANCTGCGG] [+] EMBL AA752879 [TCTCTCTNTNCCTCGCTGTNTTTCTCTATNTANCGGGTCGCGGTGAGTCGTCNTCNTCNTCGCCGGCGNTGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCGGGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCTNTTNTNTCNTCGGCCACCCGCTGTTCCANAACCTCGTCNACCGCACCGGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGGCGGCGACCCCCCGGANTTGGAACTTCCANAANCTGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8567#0 CATCATCGCCTACTCCCTCTCTCTCTCTAAAACCTCGCTGTCTTTCTCTATCTAGCGGGT 60 consensus_8567#1 -------------------TCTCTCTNT---NCCTCGCTGTNTTTCTCTATNTANCGGGT 38 ******* * ********* ********* ** ***** consensus_8567#0 CGCGGTGAGTCGTCGTCGTCGTCGCCGGCGATGGGGAAGGGAGGCGGGCTGAGCAAGCTG 120 consensus_8567#1 CGCGGTGAGTCGTCNTCNTCNTCGCCGGCGNTGGGGAAGGGAGGCGGGCTGAGCAAGCTG 98 ************** ** ** ********* ***************************** consensus_8567#0 AGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCG 180 consensus_8567#1 AGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCG 158 ************************************************************ consensus_8567#0 GGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCG 240 consensus_8567#1 GGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCG 218 ************************************************************ consensus_8567#0 GACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTC 300 consensus_8567#1 GACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTC 278 ************************************************************ consensus_8567#0 ATCGCCGAGGAGCTCGTCGGCCACCCGCTGTTCCAGAACCTCGTCGACCGCACCGGCG-- 358 consensus_8567#1 ATCGCCTNTTNTNTCNTCGGCCACCCGCTGTTCCANAACCTCGTCNACCGCACCGGCGCC 338 ****** ** ******************* ********* ************ consensus_8567#0 GCGGCG-GCGGCGGCGGCGCCGCGACCGTCGTCGGCTGCGAGGTCGTGCTGTTCGAGCAC 417 consensus_8567#1 GCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGG------CGGCGAC 392 *** ** ***** ** * *** * **** * ** * ** ** ** consensus_8567#0 CTGCTCTGGATGCTGGAGAACGCCGACCCGCAGCCGGAGTCCCTCGACGAGCTCGTCGAG 477 consensus_8567#1 C--CCCCGGANTTGGAACTTCCANAANCTGCGG--------------------------- 423 * * * *** * * * * * ** * consensus_8567#0 TACTACGCCTGCTGAGAAAGGCCGCCGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCAC 537 consensus_8567#1 ------------------------------------------------------------ consensus_8567#0 CACCGGCCGTGACGGCGGCGGCGACGCGCCGGAGTTGGAAGCTTCCAGAAGCTGCGGTAA 597 consensus_8567#1 ------------------------------------------------------------ consensus_8567#0 AATCTTTCGAAAAAAAAAAAATCTGTGTTTTGGTAGGGGTAGAAGTGAAATTTCGGACGC 657 consensus_8567#1 ------------------------------------------------------------ consensus_8567#0 CGGGGTCGAAGTGAAGAGTACGAAGCGGCAGCTAGCGTTTTTTTTTTACTTAACCCCGGC 717 consensus_8567#1 ------------------------------------------------------------ consensus_8567#0 GTCGGTGCTAATTGGGGAATTTACCATTTGTTACTGTGCTGTTAATTCTCTGATCGTTCA 777 consensus_8567#1 ------------------------------------------------------------ consensus_8567#0 TGTATTAGCTATTGGGTTTCTCATTATTTCTTTATTTTGCCCCAAAATAAGATCTATGGG 837 consensus_8567#1 ------------------------------------------------------------ consensus_8567#0 CAAACATGCCCATCGGTCCAATGTACATTCCAGTGTAAAAAATTATCATGTAATTGCCGA 897 consensus_8567#1 ------------------------------------------------------------ consensus_8567#0 G 898 consensus_8567#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||