cluster # 8567

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Oryza sativa
cluster # 8567 cluster # 8567 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8567#0 length = 898 sequences # 4

consensus_8567#1 length = 423 sequences # 1

consensusID : consensus_8567#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 898
fasta sequence

                              [CATCATCGCCTACTCCCTCTCTCTCTCTAAAACCTCGCTGTCTTTCTCTATCTAGCGGGTCGCGGTGAGTCGTCGTCGTCGTCGCCGGCGATGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCGGGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCGAGGAGCTCGTCGGCCACCCGCTGTTCCAGAACCTCGTCGACCGCACCGGCGGCGGCGGCGGCGGCGGCGCCGCGACCGTCGTCGGCTGCGAGGTCGTGCTGTTCGAGCACCTGCTCTGGATGCTGGAGAACGCCGACCCGCAGCCGGAGTCCCTCGACGAGCTCGTCGAGTACTACGCCTGCTGAGAAAGGCCGCCGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGGCGGCGACGCGCCGGAGTTGGAAGCTTCCAGAAGCTGCGGTAAAATCTTTCGAAAAAAAAAAAATCTGTGTTTTGGTAGGGGTAGAAGTGAAATTTCGGACGCCGGGGTCGAAGTGAAGAGTACGAAGCGGCAGCTAGCG-TTTTTTTTTTACTTAACCCCGGCGTCGGTGCTAATTGGGGAATTTACCATTTGTTACTGTGCTGTTAATTCTCTGATCGTTCATGTATTAGCTATTGGGTTTCTCATTATTTCTTTATTTTGCCCCAAAATAAGATCTATGGGCAAACATGCCCATCGGTCCAATGTACATTCCAGTGTAAAAAATTATCATGTAATTGCCGAG]

[+] EMBL AK106714             [CATCATCGCCTACTCCCTCTCTCTCTCTAAAACCTCGCTGTCTTTCTCTATCTAGCGGGTCGCGGTGAGTCGTCGTCGTCGTCGCCGGCGATGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCGGGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCGAGGAGCTCGTCGGCCACCCGCTGTTCCAGAACCTCGTCGACCGCACCGGCGGCGGCGGCGGCGGCGGCGCCGCGACCGTCGTCGGCTGCGAGGTCGTGCTGTTCGAGCACCTGCTCTGGATGCTGGAGAACGCCGACCCGCAGCCGGAGTCCCTCGACGAGCTCGTCGAGTACTACGCCTGCTGAGAAAGGCCGCCGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGGCGGCGACGCGCCGGAGTTGGAAGCTTCCAGAAGCTGCGGTAAAATCTTTCGAAAAAAAAAAAATCTGTGTTTTGGTAGGGGTAGAAGTGAAATTTCGGACGCCGGGGTCGAAGTGAAGAGTACGAAGCGGCAGCTAGCG TTTTTTTTTTACTTAACCCCGGCGTCGGTGCTAATTGGGGAATTTACCATTTGTTACTGTGCTGTTAATTCTCTGATCGTTCATGTATTAGCTATTGGGTTTCTCATTATTTCTTTATTTTGCCCCAAAATAAGATCTATGGGCAAACATGCCCATCGGTCCAATGTACATTCCAGTGTAAAAAATTATCATGTAATTGCCGAG]
[+] EMBL OSS3693A             [          TACTCCCTCTNTNTCTCTAAAACCTCGCTGTCTTTTTCTATCTAGCGGGTCGCGGTGAGTCGTCGTCGTCGTCGCCGGCNATGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGNAGGTGGCACTCGTCGAGCCGCATCGCGCGGGNNCCGCCGTCGGGGGNGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCGAGGAGCTCGTCGGCCACCCGCTGTTCCANAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSS3151A             [          TACTCCCTCTCTCTCTCTAAAACCTCGCTGTCTTTCTCTATCTAGCGGGTCGCGGTGAGTCGTCGTCGTCGTCGCCGGCGATGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGNCCCGCCGTCGGGGGGNGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK102438             [                                            TCTCTATCTAGCGGGTCGCGGTGAGTCGTCGTCGTCGTCGCCGGCGATGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCGGGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCGAGGAGCTCGTCGGCCACCCGCTGTTCCAGAACCTCGTCGACCGCACCGGCGGCGGCGGCGGCGGCGGCGCCGCGACCGTCGTCGGCTGCGAGGTCGTGCTGTTCGAGCACCTGCTCTGGATGCTGGAGAACGCCGACCCGCAGCCGGAGTCCCTCGACGAGCTCGTCGAGTACTACGCCTGCTGAGAAAGGCCGCCGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGGCGGCGACGCGCCGGAGTTGGAAGCTTCCAGAAGCTGCGGTAAAATCTTTCG  AAAAAAAAAATCTGTGTTTTGGTAGGGGTAGAAGTGAAATTTCGGACGCCGGGGTCGAAGTGAAGAGTACGAAGCGGCAGCTAGCGTTTTTTTTTTTACTTAACCCCGGCGTCGGTGCTAATTGGGGAATTTACCATTTGTTACTGTGCTGTTAATTCTCTGATCGTTCATGTATTAGCTATTGGGTTTCTCATTATTTCTTTATTTTGCCCCAAAATAAGATCTATGGGCAAACATGCCCATCGGTCCAATGTACATTCCAGTGTAAAAAATTATCATGTAATTGCCGAG]




>consensus_8567#0
CATCATCGCCTACTCCCTCTCTCTCTCTAAAACCTCGCTGTCTTTCTCTATCTAGCGGGT
CGCGGTGAGTCGTCGTCGTCGTCGCCGGCGATGGGGAAGGGAGGCGGGCTGAGCAAGCTG
AGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCG
GGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCG
GACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTC
ATCGCCGAGGAGCTCGTCGGCCACCCGCTGTTCCAGAACCTCGTCGACCGCACCGGCGGC
GGCGGCGGCGGCGGCGCCGCGACCGTCGTCGGCTGCGAGGTCGTGCTGTTCGAGCACCTG
CTCTGGATGCTGGAGAACGCCGACCCGCAGCCGGAGTCCCTCGACGAGCTCGTCGAGTAC
TACGCCTGCTGAGAAAGGCCGCCGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCACCAC
CGGCCGTGACGGCGGCGGCGACGCGCCGGAGTTGGAAGCTTCCAGAAGCTGCGGTAAAAT
CTTTCGAAAAAAAAAAAATCTGTGTTTTGGTAGGGGTAGAAGTGAAATTTCGGACGCCGG
GGTCGAAGTGAAGAGTACGAAGCGGCAGCTAGCGTTTTTTTTTTACTTAACCCCGGCGTC
GGTGCTAATTGGGGAATTTACCATTTGTTACTGTGCTGTTAATTCTCTGATCGTTCATGT
ATTAGCTATTGGGTTTCTCATTATTTCTTTATTTTGCCCCAAAATAAGATCTATGGGCAA
ACATGCCCATCGGTCCAATGTACATTCCAGTGTAAAAAATTATCATGTAATTGCCGAG

consensusID : consensus_8567#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [TCTCTCTNTNCCTCGCTGTNTTTCTCTATNTANCGGGTCGCGGTGAGTCGTCNTCNTCNTCGCCGGCGNTGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCGGGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCTNTTNTNTCNTCGGCCACCCGCTGTTCCANAACCTCGTCNACCGCACCGGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGGCGGCGACCCCCCGGANTTGGAACTTCCANAANCTGCGG]

[+] EMBL AA752879             [TCTCTCTNTNCCTCGCTGTNTTTCTCTATNTANCGGGTCGCGGTGAGTCGTCNTCNTCNTCGCCGGCGNTGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCGGGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCTNTTNTNTCNTCGGCCACCCGCTGTTCCANAACCTCGTCNACCGCACCGGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGGCGGCGACCCCCCGGANTTGGAACTTCCANAANCTGCGG]




>consensus_8567#1
TCTCTCTNTNCCTCGCTGTNTTTCTCTATNTANCGGGTCGCGGTGAGTCGTCNTCNTCNT
CGCCGGCGNTGGGGAAGGGAGGCGGGCTGAGCAAGCTGAGGTGCATGATCAGGAGGTGGC
ACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCGGGGGAGCTGGAGGAGGGCTCTG
CGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCGGACGAGGTGCCCAAGGGGCTCC
ACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTCATCGCCTNTTNTNTCNTCGGCC
ACCCGCTGTTCCANAACCTCGTCNACCGCACCGGCGCCGCGCCGCGCGGCTTACCTCCCC
CCACCACCACCGGCCGTGACGGCGGCGGCGACCCCCCGGANTTGGAACTTCCANAANCTG
CGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8567#0      CATCATCGCCTACTCCCTCTCTCTCTCTAAAACCTCGCTGTCTTTCTCTATCTAGCGGGT 60
consensus_8567#1      -------------------TCTCTCTNT---NCCTCGCTGTNTTTCTCTATNTANCGGGT 38
                                         ******* *    ********* ********* ** *****

consensus_8567#0      CGCGGTGAGTCGTCGTCGTCGTCGCCGGCGATGGGGAAGGGAGGCGGGCTGAGCAAGCTG 120
consensus_8567#1      CGCGGTGAGTCGTCNTCNTCNTCGCCGGCGNTGGGGAAGGGAGGCGGGCTGAGCAAGCTG 98
                      ************** ** ** ********* *****************************

consensus_8567#0      AGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCG 180
consensus_8567#1      AGGTGCATGATCAGGAGGTGGCACTCGTCGAGCCGCATCGCGCGGGCGCCGCCGTCGGCG 158
                      ************************************************************

consensus_8567#0      GGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCG 240
consensus_8567#1      GGGGAGCTGGAGGAGGGCTCTGCGGCGGCGGCGGGGAGGGCGGCGTCGTTCCACGGCGCG 218
                      ************************************************************

consensus_8567#0      GACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTC 300
consensus_8567#1      GACGAGGTGCCCAAGGGGCTCCACCCGGTGTACGTCGGCAAGTCGCGGCGGCGGTACCTC 278
                      ************************************************************

consensus_8567#0      ATCGCCGAGGAGCTCGTCGGCCACCCGCTGTTCCAGAACCTCGTCGACCGCACCGGCG-- 358
consensus_8567#1      ATCGCCTNTTNTNTCNTCGGCCACCCGCTGTTCCANAACCTCGTCNACCGCACCGGCGCC 338
                      ******       ** ******************* ********* ************  

consensus_8567#0      GCGGCG-GCGGCGGCGGCGCCGCGACCGTCGTCGGCTGCGAGGTCGTGCTGTTCGAGCAC 417
consensus_8567#1      GCGCCGCGCGGCTTACCTCCCCCCACCACCACCGGCCGTGACGGCGG------CGGCGAC 392
                      *** ** *****       ** * ***  *  **** * ** * **       **   **

consensus_8567#0      CTGCTCTGGATGCTGGAGAACGCCGACCCGCAGCCGGAGTCCCTCGACGAGCTCGTCGAG 477
consensus_8567#1      C--CCCCGGANTTGGAACTTCCANAANCTGCGG--------------------------- 423
                      *  * * ***    * *   *    * * ** *                           

consensus_8567#0      TACTACGCCTGCTGAGAAAGGCCGCCGCGCCGCGCCGCGCGGCTTACCTCCCCCCACCAC 537
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      CACCGGCCGTGACGGCGGCGGCGACGCGCCGGAGTTGGAAGCTTCCAGAAGCTGCGGTAA 597
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      AATCTTTCGAAAAAAAAAAAATCTGTGTTTTGGTAGGGGTAGAAGTGAAATTTCGGACGC 657
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      CGGGGTCGAAGTGAAGAGTACGAAGCGGCAGCTAGCGTTTTTTTTTTACTTAACCCCGGC 717
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      GTCGGTGCTAATTGGGGAATTTACCATTTGTTACTGTGCTGTTAATTCTCTGATCGTTCA 777
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      TGTATTAGCTATTGGGTTTCTCATTATTTCTTTATTTTGCCCCAAAATAAGATCTATGGG 837
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      CAAACATGCCCATCGGTCCAATGTACATTCCAGTGTAAAAAATTATCATGTAATTGCCGA 897
consensus_8567#1      ------------------------------------------------------------
                                                                                  

consensus_8567#0      G 898
consensus_8567#1      -