cluster # 8568

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Oryza sativa
cluster # 8568 cluster # 8568 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8568#0 length = 794 sequences # 1

consensus_8568#1 length = 766 sequences # 4

consensusID : consensus_8568#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 794
fasta sequence

                              [AACATCAAAAAGTTGTTCTGTAGAGTTCTGTACATGAAATTTACAGAAGGTATCTTCCCCAAGTGAGATCAAAAGTTCTGCAACTTTTGACAACAATAGATTCAGTAGAGGATTCCTGTCAGGCACTTACAACTCCAAGTAGTAGTAGAATCCTTCAGTAGAGGATTCTTGTCAGGCACTTACAACTCAAAGTAATAGAAACCCAAACCCCAGTGTATCTACAAGACCACAACTAAAAAAGCTGCAACACCAACCATGCTAGATATTCACTTCCCGCTAATTCTGCCTGTTTCTAGGACCAGAATTTGAACACAAGAAGTTGCTTCCCAGTAAGGTCAAAGTCCATGTTCCTGAATCCTGATCAATTGAAGTTCATATAAAATTCGTGCAAGCATGCATACCTATTGGTTATTGCTCCAAGCAAGGCCTTGACACCAATCACCATGCTTATCCAGATTCAGGGTTTGTGCTTTAGAACGAAGGGGCAAATGCATCCAAACTTACACAGCACCAAGAAGTTTTAACAGACAATTAGAACATCCTTAGGACCTTAACTCACTCCACCCCCTTGCTGTCAAGTGTAATTAACATGAAACAAAACGAACTCATCTAGTTCACTTCAGCCTCTTTGTTTCCTACTCCAGAATCACCAAAATAATTTCTTCCAGTTCGCATCAACCTCTTGTTTCCAGCTTCACAGTGGCCAAAAGACACAAACACAAGAAAAGAGAACATAATGCTGGCATATTGGGATCCCTTGTATATTTGCATAGATGGCAAAAGCTAGGCAAGCA]

[+] EMBL CB633937             [AACATCAAAAAGTTGTTCTGTAGAGTTCTGTACATGAAATTTACAGAAGGTATCTTCCCCAAGTGAGATCAAAAGTTCTGCAACTTTTGACAACAATAGATTCAGTAGAGGATTCCTGTCAGGCACTTACAACTCCAAGTAGTAGTAGAATCCTTCAGTAGAGGATTCTTGTCAGGCACTTACAACTCAAAGTAATAGAAACCCAAACCCCAGTGTATCTACAAGACCACAACTAAAAAAGCTGCAACACCAACCATGCTAGATATTCACTTCCCGCTAATTCTGCCTGTTTCTAGGACCAGAATTTGAACACAAGAAGTTGCTTCCCAGTAAGGTCAAAGTCCATGTTCCTGAATCCTGATCAATTGAAGTTCATATAAAATTCGTGCAAGCATGCATACCTATTGGTTATTGCTCCAAGCAAGGCCTTGACACCAATCACCATGCTTATCCAGATTCAGGGTTTGTGCTTTAGAACGAAGGGGCAAATGCATCCAAACTTACACAGCACCAAGAAGTTTTAACAGACAATTAGAACATCCTTAGGACCTTAACTCACTCCACCCCCTTGCTGTCAAGTGTAATTAACATGAAACAAAACGAACTCATCTAGTTCACTTCAGCCTCTTTGTTTCCTACTCCAGAATCACCAAAATAATTTCTTCCAGTTCGCATCAACCTCTTGTTTCCAGCTTCACAGTGGCCAAAAGACACAAACACAAGAAAAGAGAACATAATGCTGGCATATTGGGATCCCTTGTATATTTGCATAGATGGCAAAAGCTAGGCAAGCA]




>consensus_8568#0
AACATCAAAAAGTTGTTCTGTAGAGTTCTGTACATGAAATTTACAGAAGGTATCTTCCCC
AAGTGAGATCAAAAGTTCTGCAACTTTTGACAACAATAGATTCAGTAGAGGATTCCTGTC
AGGCACTTACAACTCCAAGTAGTAGTAGAATCCTTCAGTAGAGGATTCTTGTCAGGCACT
TACAACTCAAAGTAATAGAAACCCAAACCCCAGTGTATCTACAAGACCACAACTAAAAAA
GCTGCAACACCAACCATGCTAGATATTCACTTCCCGCTAATTCTGCCTGTTTCTAGGACC
AGAATTTGAACACAAGAAGTTGCTTCCCAGTAAGGTCAAAGTCCATGTTCCTGAATCCTG
ATCAATTGAAGTTCATATAAAATTCGTGCAAGCATGCATACCTATTGGTTATTGCTCCAA
GCAAGGCCTTGACACCAATCACCATGCTTATCCAGATTCAGGGTTTGTGCTTTAGAACGA
AGGGGCAAATGCATCCAAACTTACACAGCACCAAGAAGTTTTAACAGACAATTAGAACAT
CCTTAGGACCTTAACTCACTCCACCCCCTTGCTGTCAAGTGTAATTAACATGAAACAAAA
CGAACTCATCTAGTTCACTTCAGCCTCTTTGTTTCCTACTCCAGAATCACCAAAATAATT
TCTTCCAGTTCGCATCAACCTCTTGTTTCCAGCTTCACAGTGGCCAAAAGACACAAACAC
AAGAAAAGAGAACATAATGCTGGCATATTGGGATCCCTTGTATATTTGCATAGATGGCAA
AAGCTAGGCAAGCA

consensusID : consensus_8568#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 766
fasta sequence

                              [AGAGAGGAAAAAACANGGGGAGGAAAAGGAAGANGGGGAAGGGAGACNCCACNNCCAAACCCTAGCCGAGCACCCCCTCCCCTCCTCCTCCCCCATCGGAGCCTCCTCGCCTCGCCCTCGCCCACCAAGCCCCCGCGCGCGCGCACGTGCATCCGGCGATGCGGAAGTCGAAGCAGCCGCAGCCGCAGCCGTCGCCGGAGATCCGGTACCGGGGCGTGCGGAAGCGGCCGTCGGGGAGGTACGCCGCCGAGATCCGGGACCCGGCGAAGAAGACCCCGATCTGGCTGGGTACCTTCGACTCCGCCGAGGTGGCGGCCCGCGCCTACGACGACGCCGCCCGATCTCTCCGCGGGCCCACCGCGCGGACCAACTTCCCCTTGGCCGCGCCGTCCGCGCCCCCGCCCCGGCCGCCGCCGCCGGCGGCGGCGGCGGGCGCCACGTCCAGCCACAGCAGCACCGTTGAGGCATGGAGCGATTCAGGGTTTGTGCTTTAAAACGAAGGGGCAAATGCATCCAAACTTACACAGCACCAAGAAGTTTTAACAGACAATTAGAACATCCTTAGGACCTTAACTCACTCCACCCCCTTGCTGTCAAGTGTAATTAACATGAAACAAAACGAACTCATCTAGTTCACTTCAGCCTCTTTGTTTCCTACTCCAGAATCACCAAAATAATTTCTTCCAGTTCGCATCAACCTCTTGTTTCCAGCTTCACAGTGGCCAAAAGACACAAACACAAGAAAAGAGACCATAATGCTGGCATA]

[+] EMBL AU077749             [AGAGAGGAAAAAACANGGGGAGGAAAAGGAAGANGGGGAAGGGAGACNCCACNNCCAAACCCTAGCCGAGCACCCCCTCCCCTCCTCCTCCCCCATCGGAGCCTCCTCGCCTCGCCCTCGCCCACCAAGCCCCCGCGCGCGCGCACGTGCATCCGGCGATGCGGAAGTCGAAGCAGCCGCAGCCGCAGCCGTCGCCGGAGATCCGGTACCGGGGCGTGCGGAAGCGGCCGTCGGGGAGGTACNCCGCCGAGATCCGGGACCCGGCGAAGAAGACNCCGATCTGGCTGGGTACCTTCGACTCCGCCGAGGTGGCGGCCCGCGCCTACGACGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB633936             [                                             ACGCCACTGCCAAACCCTAGCCGAGCACCCCCTCCCCTCCTCCTCCCCCATCGGAGCCTCCTCGCCTCGCCCTCGCCCACCAAGCCCCCGCGCGCGCGCGCGTGCATCCGGCGATGCGGAAGTCGAAGCAGCCGCAGCCGCAGCCGTCGCCGGAGATCCGGTACCGGGGCGTGCGGAAGCGGCCGTCGGGGAGGTACGCCGCCGAGATCCGGGACCCGGCGAAGAAGACCCCGATCTGGCTGGGTACCTTCGACTCCGCCGAGGTGGCGGCCCGCGCCTACGACGACGCCGCCCGATCTCTCCGCGGGCCCACCGCGCGGACCAACTTCCCCTTGGCCGCGCCGTCCGCGCCCCCGCCCCGGCCGCCGCCGCCGGCGGCGGCGGCGGGCGCCACGTCCAGCCACAGCAGCACCGTTGAGGCATGGAGCGATTCAGGGTTTGTGCTTTAAAACGAAGGGGCAAATGCATCCAAACTTACACAGCACCAAGAAGTTTTAACAGACAATTAGAACATCCTTAGGACCTTAACTCACTCCACCCCCTTGCTGTCAAGTGTAATTAACATGAAACAAAACGAACTCATCTAGTTCACTTCAGCCTCTTTGTTTCCTACTCCAGAATCACCAAAATAATTTCTTCCAGTTCGCATCAACCTCTTGTTTCCAGCTTCACAGTGGCCAAAAGACACAAACACAAGAAAAGAGACCATAATGCTGGCATA]
[+] EMBL AU091359             [                                                                                                                     TCGCCCACCAAGCCCCCGCGCGCGCGCACGTGCATCCGGCGATGCGGAAGTCGAAGCAGCCGCAGCCGCAGCCGTCGCCGGAGATCCGGTACCGGGGCGTGCGGAAGCGGCCGTCGGGGAGGTACGCCGCCGAGATCCGGGACCCGGCGAAGAAGACCCCGATCTGGCTGGGTACCTTCGACTCCGCCGAGGTGGCGGCCCGCGCCTACGACGACGCCGCCCGATCTCTCCGCGGGCCCACCGCGCGGACCAACTTCCCCTTGGCCGCGCCGTCCGCGCCCCCGCCCCGGCCGCCGgc                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C74249               [                                                                                                                     TCGCCCACCAAGCCCCCGCGCGCGCNCACGTGCATCCGGCGATGCGGAAGTCGAAGCANCCGCAGCCGCAGCCGTCGCCGGAGATCCGGTACCGGGGCGTGCGGAA CNGCCGTCGGGGANGTACGCCGCCGAGATCCNGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]




>consensus_8568#1
AGAGAGGAAAAAACANGGGGAGGAAAAGGAAGANGGGGAAGGGAGACNCCACNNCCAAAC
CCTAGCCGAGCACCCCCTCCCCTCCTCCTCCCCCATCGGAGCCTCCTCGCCTCGCCCTCG
CCCACCAAGCCCCCGCGCGCGCGCACGTGCATCCGGCGATGCGGAAGTCGAAGCAGCCGC
AGCCGCAGCCGTCGCCGGAGATCCGGTACCGGGGCGTGCGGAAGCGGCCGTCGGGGAGGT
ACGCCGCCGAGATCCGGGACCCGGCGAAGAAGACCCCGATCTGGCTGGGTACCTTCGACT
CCGCCGAGGTGGCGGCCCGCGCCTACGACGACGCCGCCCGATCTCTCCGCGGGCCCACCG
CGCGGACCAACTTCCCCTTGGCCGCGCCGTCCGCGCCCCCGCCCCGGCCGCCGCCGCCGG
CGGCGGCGGCGGGCGCCACGTCCAGCCACAGCAGCACCGTTGAGGCATGGAGCGATTCAG
GGTTTGTGCTTTAAAACGAAGGGGCAAATGCATCCAAACTTACACAGCACCAAGAAGTTT
TAACAGACAATTAGAACATCCTTAGGACCTTAACTCACTCCACCCCCTTGCTGTCAAGTG
TAATTAACATGAAACAAAACGAACTCATCTAGTTCACTTCAGCCTCTTTGTTTCCTACTC
CAGAATCACCAAAATAATTTCTTCCAGTTCGCATCAACCTCTTGTTTCCAGCTTCACAGT
GGCCAAAAGACACAAACACAAGAAAAGAGACCATAATGCTGGCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8568#0      --------------------AACATCAAAAAGTTGTTCTGTAGAG-TTCTGTACATGAAA 39
consensus_8568#1      AGAGAGGAAAAAACANGGGGAGGAAAAGGAAGANGGGGAAGGGAGACNCCACNNCCAAAC 60
                                          *  *  *  ***  *       ***   *        ** 

consensus_8568#0      TTTA-CAGAAGGTATCTTCCCCAAGTGAGATCAAAAGTTCTGCAACTTTTGACAACAATA 98
consensus_8568#1      CCTAGCCGAGCACCCCCTCCCCTCCTCCTCCCCCA---TCGGAGCCTCCTCGCCTCGCCC 117
                        ** * **      * *****   *     *  *   ** *   **  *  *  *    

consensus_8568#0      GATTCAGTAGAGGATTCCTGT-CAGGCACTTACAACT--CCAAGTAGTAGTAGAATC--C 153
consensus_8568#1      TCGCCCACCAAGCCCCCGCGCGCGCGCACGTGCATCCGGCGATGCGGAAGTCGAAGCAGC 177
                          *     **    *  *  *  **** * ** *   * * *  * *** *** *  *

consensus_8568#0      TTCAGTAGAGGATTCTTGTCAGGCACTTACAACTCAAAGTAATAGAAACCCAAACCCCAG 213
consensus_8568#1      CGCAGCCGCAG-CCGTCGCCGGAGATCCGGTACCGGGGCGTGCGGAAGC---GGCCGTCG 233
                        ***  *  *    * * * *  *      **           *** *     **   *

consensus_8568#0      TGTATCTACAAGACCACAACTAAAAAAGCTGCAACACCAACCATGCTAGATATTCACTTC 273
consensus_8568#1      GGGAGGTACGCCGCCGAGATCCGGGACCCGGCGAAGAAGACCCCGAT--CTGGCTGGGTA 291
                       * *  ***    **   *      *  * ** *     ***  * *   *       * 

consensus_8568#0      CCGCTAATTCTGCCTGTTTCTAGGACCAGAATTTGAAC-ACAAGAAGTTGCTTCCCAGTA 332
consensus_8568#1      CCTTCGACTCCGCCGAGGTGGCGGCCCGCGCCTACGACGACGCCGCCCGATCTCTCCGCG 351
                      **    * ** ***    *   ** **     *   ** **           ** * *  

consensus_8568#0      AGGTCAAAGTCCATGTTC-CTGAATCCTGATCAATTGAAGTTCATATAAAATTCGTGCAA 391
consensus_8568#1      GGCCCACCGCGCGGACCAACTTCCCCTTGGCCG--CGCCGTCCGCGCCCCCGCCCCGGCC 409
                       *  **  *  *       **    * **  *    *  ** *          *  *   

consensus_8568#0      GCATGCATACCTATTGGTTATTG-CTCCAAGCAAGGCCTTGACACCAATCACCATGCTTA 450
consensus_8568#1      GCCGCCGCCGGCGGCGGCGGCGGGCGCCACGTCCAGCCACAGCAGCACCGTTGAGGCATG 469
                      **   *         **     * * *** *    ***    ** **      * ** * 

consensus_8568#0      TCCAGATTCAGGGTTTGTGCTTTAGAACGAAGGGGCAAATGCATCCAAACTTACACAGCA 510
consensus_8568#1      GAGCGATTCAGGGTTTGTGCTTTAAAACGAAGGGGCAAATGCATCCAAACTTACACAGCA 529
                          ******************** ***********************************

consensus_8568#0      CCAAGAAGTTTTAACAGACAATTAGAACATCCTTAGGACCTTAACTCACTCCACCCCCTT 570
consensus_8568#1      CCAAGAAGTTTTAACAGACAATTAGAACATCCTTAGGACCTTAACTCACTCCACCCCCTT 589
                      ************************************************************

consensus_8568#0      GCTGTCAAGTGTAATTAACATGAAACAAAACGAACTCATCTAGTTCACTTCAGCCTCTTT 630
consensus_8568#1      GCTGTCAAGTGTAATTAACATGAAACAAAACGAACTCATCTAGTTCACTTCAGCCTCTTT 649
                      ************************************************************

consensus_8568#0      GTTTCCTACTCCAGAATCACCAAAATAATTTCTTCCAGTTCGCATCAACCTCTTGTTTCC 690
consensus_8568#1      GTTTCCTACTCCAGAATCACCAAAATAATTTCTTCCAGTTCGCATCAACCTCTTGTTTCC 709
                      ************************************************************

consensus_8568#0      AGCTTCACAGTGGCCAAAAGACACAAACACAAGAAAAGAGAACATAATGCTGGCATATTG 750
consensus_8568#1      AGCTTCACAGTGGCCAAAAGACACAAACACAAGAAAAGAGACCATAATGCTGGCATA--- 766
                      ***************************************** ***************   

consensus_8568#0      GGATCCCTTGTATATTTGCATAGATGGCAAAAGCTAGGCAAGCA 794
consensus_8568#1      --------------------------------------------