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Oryza sativa
cluster # 8572 cluster # 8572       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8572#0 length = 1301 sequences # 4  
consensus_8572#1 length = 349 sequences # 1  

consensusID : consensus_8572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1301
fasta sequence
                              [CGCGCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGATCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAGATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCCTGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGCGGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCCGACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGATATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCTCGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTACTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC]

[+] EMBL AK066690             [CGCGCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGATCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAGATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCCTGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGCGGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCCGACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGATATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCTCGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTACTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTC                     ]
[+] EMBL AK104273             [   GCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGATCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAGATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCCTGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGCGGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCCGACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGATATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCTCGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTACTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAG                          ]
[-] EMBL CB638814             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC]
[-] EMBL CB639168             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTGGATGCACAGAAGTTCATGCAAGGTTCCTTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGAAAAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC]


>consensus_8572#0 CGCGCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGA TCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAG ATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCC TGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCT CCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGG GTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGC GGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCC GACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGAT ATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCT CGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTA CTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTAT GGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCA GTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCC AAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTC TTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTT ATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATA GCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTG TTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTT CAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACC AATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGAT TACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGAT GCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC



consensusID : consensus_8572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence
                              [GGTGGACCACCTATAAGGGGGTTCCACCTATATCCTGTGTATTCCACGGCCACTGGATTGCCACATGATAGCCACGATTATAGACCTGGGATGGCTACACTTGTCCACAAGTCGTGAAGATACGCGTAGNTTGGTTGGATATTGTTTGTATCTTGCCATTGGCCCAAACTGTCACCGAGAGATGATCATATGTCACTGTACATGTTCATAGTNACAGGTAGAGTTNGCCAAATACCNGACGGATATAACCCGTACAGGCTGGGGTTGACCCATNGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAANTGATTNCCATGTTAAAAAAAAAA]

[+] EMBL BM419032             [GGTGGACCACCTATAAGGGGGTTCCACCTATATCCTGTGTATTCCACGGCCACTGGATTGCCACATGATAGCCACGATTATAGACCTGGGATGGCTACACTTGTCCACAAGTCGTGAAGATACGCGTAGNTTGGTTGGATATTGTTTGTATCTTGCCATTGGCCCAAACTGTCACCGAGAGATGATCATATGTCACTGTACATGTTCATAGTNACAGGTAGAGTTNGCCAAATACCNGACGGATATAACCCGTACAGGCTGGGGTTGACCCATNGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAANTGATTNCCATGTTAAAAAAAAAA]


>consensus_8572#1 GGTGGACCACCTATAAGGGGGTTCCACCTATATCCTGTGTATTCCACGGCCACTGGATTG CCACATGATAGCCACGATTATAGACCTGGGATGGCTACACTTGTCCACAAGTCGTGAAGA TACGCGTAGNTTGGTTGGATATTGTTTGTATCTTGCCATTGGCCCAAACTGTCACCGAGA GATGATCATATGTCACTGTACATGTTCATAGTNACAGGTAGAGTTNGCCAAATACCNGAC GGATATAACCCGTACAGGCTGGGGTTGACCCATNGTTTTAAGCCAGGCTGTATGATTAGG CTTGATTAAGTTTGACCAGCATGAANTGATTNCCATGTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8572#0      CGCGCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGA 60
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      TCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAG 120
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      ATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCC 180
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      TGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCT 240
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      CCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGG 300
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      GTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGC 360
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      GGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCC 420
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      GACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGAT 480
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      ATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCT 540
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      CGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTA 600
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      CTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTAT 660
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      GGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCA 720
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      GTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCC 780
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      AAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTC 840
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      TTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTT 900
consensus_8572#1      -------------------------------GGTGGACCACCTATAAGGGGGTTCCACCT 29
                                                          *      **** **  ** **  *

consensus_8572#0      ATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATA 960
consensus_8572#1      ATATCCTGTG-TATTCCACGG----CCACTGGATT--GCCACATGATAGCCACGATTATA 82
                      **     ***  * *  * **     ****    *    **           * ** ***

consensus_8572#0      GCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAA--CGCGTAGTTTG-TTGGATA 1017
consensus_8572#1      G-ACCTGGGATGGCTACACTTGTCCACAAGTCGTGAAGATACGCGTAGNTTGGTTGGATA 141
                      * *  *    *** * *     *    ******* *  *  ******* *** *******

consensus_8572#0      TTGTTTGTATCTTGCAATTGGCC-AAACTGTCAC-GAGAGATGATCATCTGTCACTGTAC 1075
consensus_8572#1      TTGTTTGTATCTTGCCATTGGCCCAAACTGTCACCGAGAGATGATCATATGTCACTGTAC 201
                      *************** ******* ********** ************* ***********

consensus_8572#0      ATGTTCA-AGTTACAGGTAGAGTTTGCAAAA---CCAACGGATAAAACA-GTACAGGGCT 1130
consensus_8572#1      ATGTTCATAGTNACAGGTAGAGTTNGCCAAATACCNGACGGATATAACCCGTACAGG-CT 260
                      ******* *** ************ ** ***   *  ******* ***  ******* **

consensus_8572#0      GGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGC 1190
consensus_8572#1      GGGGTTGACCCATNGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGC 320
                      ********** ** **********************************************

consensus_8572#0      ATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCA 1250
consensus_8572#1      ATGAANTGATTNCCATGTTAAAAAAAAAA------------------------------- 349
                      ***** ***** * ******   *                                    

consensus_8572#0      CATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC 1301
consensus_8572#1      ---------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)