These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1301 fasta sequence [CGCGCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGATCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAGATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCCTGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGCGGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCCGACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGATATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCTCGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTACTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC] [+] EMBL AK066690 [CGCGCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGATCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAGATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCCTGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGCGGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCCGACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGATATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCTCGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTACTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTC ] [+] EMBL AK104273 [ GCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGATCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAGATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCCTGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGCGGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCCGACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGATATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCTCGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTACTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAG ] [-] EMBL CB638814 [ TTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC] [-] EMBL CB639168 [ GTGGATGCACAGAAGTTCATGCAAGGTTCCTTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGAAAAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC] consensusID : consensus_8572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [GGTGGACCACCTATAAGGGGGTTCCACCTATATCCTGTGTATTCCACGGCCACTGGATTGCCACATGATAGCCACGATTATAGACCTGGGATGGCTACACTTGTCCACAAGTCGTGAAGATACGCGTAGNTTGGTTGGATATTGTTTGTATCTTGCCATTGGCCCAAACTGTCACCGAGAGATGATCATATGTCACTGTACATGTTCATAGTNACAGGTAGAGTTNGCCAAATACCNGACGGATATAACCCGTACAGGCTGGGGTTGACCCATNGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAANTGATTNCCATGTTAAAAAAAAAA] [+] EMBL BM419032 [GGTGGACCACCTATAAGGGGGTTCCACCTATATCCTGTGTATTCCACGGCCACTGGATTGCCACATGATAGCCACGATTATAGACCTGGGATGGCTACACTTGTCCACAAGTCGTGAAGATACGCGTAGNTTGGTTGGATATTGTTTGTATCTTGCCATTGGCCCAAACTGTCACCGAGAGATGATCATATGTCACTGTACATGTTCATAGTNACAGGTAGAGTTNGCCAAATACCNGACGGATATAACCCGTACAGGCTGGGGTTGACCCATNGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAANTGATTNCCATGTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8572#0 CGCGCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGA 60 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 TCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAG 120 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 ATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCC 180 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 TGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCT 240 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 CCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGG 300 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 GTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGC 360 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 GGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCC 420 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 GACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGAT 480 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 ATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCT 540 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 CGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTA 600 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 CTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTAT 660 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 GGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCA 720 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 GTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCC 780 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 AAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTC 840 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 TTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTT 900 consensus_8572#1 -------------------------------GGTGGACCACCTATAAGGGGGTTCCACCT 29 * **** ** ** ** * consensus_8572#0 ATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATA 960 consensus_8572#1 ATATCCTGTG-TATTCCACGG----CCACTGGATT--GCCACATGATAGCCACGATTATA 82 ** *** * * * ** **** * ** * ** *** consensus_8572#0 GCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAA--CGCGTAGTTTG-TTGGATA 1017 consensus_8572#1 G-ACCTGGGATGGCTACACTTGTCCACAAGTCGTGAAGATACGCGTAGNTTGGTTGGATA 141 * * * *** * * * ******* * * ******* *** ******* consensus_8572#0 TTGTTTGTATCTTGCAATTGGCC-AAACTGTCAC-GAGAGATGATCATCTGTCACTGTAC 1075 consensus_8572#1 TTGTTTGTATCTTGCCATTGGCCCAAACTGTCACCGAGAGATGATCATATGTCACTGTAC 201 *************** ******* ********** ************* *********** consensus_8572#0 ATGTTCA-AGTTACAGGTAGAGTTTGCAAAA---CCAACGGATAAAACA-GTACAGGGCT 1130 consensus_8572#1 ATGTTCATAGTNACAGGTAGAGTTNGCCAAATACCNGACGGATATAACCCGTACAGG-CT 260 ******* *** ************ ** *** * ******* *** ******* ** consensus_8572#0 GGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGC 1190 consensus_8572#1 GGGGTTGACCCATNGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGC 320 ********** ** ********************************************** consensus_8572#0 ATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCA 1250 consensus_8572#1 ATGAANTGATTNCCATGTTAAAAAAAAAA------------------------------- 349 ***** ***** * ****** * consensus_8572#0 CATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC 1301 consensus_8572#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||