Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8574 cluster # 8574       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8574#0 length = 778 sequences # 5  

consensusID : consensus_8574#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 778
fasta sequence
                              [AAAACCAAAAAAGCGAACGGAACATTTCGCCGCCGGCCGCCACGACGCCGGCGACCGCCACCGCCACCATGTCGGCGCTGGCTCCCGCCCCGAAGCTGCAGCCGGACGAGCGGTCCAACCTCCTCTCGCTGCTCGCCGCCGCCTCCCGCCCGCTCGCCGACATCGCCGCCGACTTCCTCGCGCGGTTCCCCCTCGAGCGCCGCCTCCGCGTCGGCGCCGCGCTCGGGTTCCTCCTCGAGGACAAGAAGATGCTTCATCCTACTGGTCGGTTGATTGCATTTGCTATTCTTCACCAGAGTTATTCCTCGGAGCCGGCAAACCCATATGTTCCACTTTTATTAAATGCAGCCTGTGATGAAACATCAGAAAAATCGGAACGGGCATTTGTCCAACTTTTGTTGACTTCAGCAAGTGGAAACAATAACATTGAGGTGCTGAAGCAGTCAGCTGTAGATTACATAAATGGGTCTGATTCTGCATCTCAGGCCTTACTTCCACGAGAACAGCTTGAGAAGCTATTCAGCAGTAATAGTGTACAGTCTCAGCCTCAGACCAGTAGTTTTAGTGCAGGAACTGTTAGATGTGCTATACCGGATCCAGATGTACCTCAAAGCTGTGTAAATTCGTCAGAGCCTAGCATATCATTACCTGGAACCAAACCAAAATCTGCTTCTGATGATAGAGATTTTGCTCTTGCTGGTTTACTCCAAGAAAAATCATGGGGAAGATTGGGTCCGCAATGGATACGACCCACACCCCCAAGACTTCACATACTTGA]

[+] EMBL CB642666             [AAAACCCCTTAAGCGAACGGAACATTTCGCCGCCGGCCGCCACGACGCCGGCGACCGCCACCGCCACCATGTCGGCGCTGGCTCCCGCCCCGAAGCTGCAGCCGGACGAGCGGTCCAACCTCCTCTCGCTGCTCGCCGCCGCCTCCCGCCCGCTCGCCGACATCGCCGCCGACTTCCTCGCGCGGTTCCCCCTCGAGCGCCGCCTCCGCGTCGGCGCCGCGCTCGGGTTCCTCCTCGAGGACAAGAAGATGCTTCATCCTACTGGTCGGTTGATTGCATTTGCTATTCTTCACCAGAGTTATTCCTCGGAGCCGGCAAACCCATATGTTCCACTTTTATTAAATGCAGCCTGTGATGAAACATCAGAAAAATCGGAACGGGCATTTGTCCAACTTTTGTTGACTTCAGCAAGTGGAAACAATAACATTGAGGTGCTGAAGCAGTCAGCTGTAGATTACATAAATGGGTCTGATTCTGCATCTCAGGCCTTACTTCCACGAGAACAGCTTGAGAAGCTATTCAGCAGTAATAGTGTACAGTCTCAGCCTCAGACCAGTAGTTTTAGTGCAGGAACTGTTAGATGTGCTATACCGGATCCAGATGTACCTCAAAGCTGTGTAAATTCGTCAGAGCCTAGCATATCATTACCTGGAACCAAACCAAAATCTGCTTCTGATGATAGAGATTTTGCTCTTGCTGGTTTACTCCAAGAAAAATCATGGGGAAGATTGGGTCCGCAATGGATACGACCCACACCCCCAAGACTTCACATACTTGA]
[+] EMBL CB642459             [AAAACCAAAAAAGCGAACGGAACATTTCGCCGCCGGCCGCCACGACGCCGGCGACCGCCACCGCCACCATGTCGGCGCTGGCTCCCGCCCCGAAGCTGCAGCCGGACGAGCGGTCCAACCTCCTCTCGCTGCTCGCCGCCGCCTCCCGCCCGCTCGCCGACATCGCCGCCGACTTCCTCGCGCGGTTCCCCCTCGAGCGCCGCCTCCGCGTCGGCGCCGCGCTCGGGTTCCTCCTCGAGGACAAGAAGATGCTTCATCCTACTGGTCGGTTGATTGCATTTGCTATTCTTCACCAGAGTTATTCCTCGGAGCCGGCAAACCCATATGTTCCACTTTTATTAAATGCAGCCTGTGATGAAACATCAGAAAAATCGGAACGGGCATTTGTCCAACTTTTGTTGACTTCAGCAAGTGGAAACAATAACATTGAGGTGCTGAAGCAGTCAGCTGTAGATTACATAAATGGGTCTGATTCTGCATCTCAGGCCTTACTTCCACGAGAACAGCTTGAGAAGCTATTCAGCAGTAATAGTGTACAGTCTCAGCCTCAGACCAGTAGTTTTAGTGCAGGAACTGTTAGATGTGCTATACCGGATCCAGATGTACCTCAAAGCTGTGTAAATTCGTCAGAGCCTAGCATATCATTACCTGGAACCAAACCAAAATCTGCTTCTGATGATAGAGATTTTGCTCTTGCTGGTTTACTCCAAGAAAAATCATGGGGAAGATTGGGTCCGCAATGGATACGACCCACACCCCCCAGACTTC          ]
[+] EMBL CB642625             [AAAACCAAAAAAGCGAACGGAACATTTCGCCGCCGGCCGCCACGACGCCGGCGACCGCCACCGCCACCATGTCGGCGCTGGCTCCCGCCCCGAAGCTGCAGCCGGACGAGCGGTCCAACCTCCTCTCGCTGCTCGCCGCCGCCTCCCGCCCGCTCGCCGACATCGCCGCCGACTTCCTCGCGCGGTTCCCCCTCGAGCGCCGCCTCCGCGTCGGCGCCGCGCTCGGGTTCCTCCTCGAGGACAAGAAGATGCTTCATCCTACTGGACGGTTGATTGCATTTGCTATTCTTCACCAGAGTTATTCCTCGGAGCCGGCAAACCCATATGTTCCACTTTTATTAAATGCAGCCTGTGATGAAACATCAGAAAAATCGGAACGGGCATTTGTCCAACTTTTGTTGACTTCAGCAAGTGGAAACAATAACATTGAGGTGCTGAAGCAGTCAGCTGTACATTACATAAATGGGTCTGATTCTGCATCTCAGGCCTTACTTCCACGAGAACAGCTTGAGAAGCTATTCAGCAGTAATAGTGTACAGTCTCAGCCTCAGACCAGCAGTTTTAGTGCAGGAACTGTTAGATGTGCTATACCGGATCCAGATGTACCTCAAAGCTGTGTAAATTCGTCAGAGCCTAGCATATCATTACCTGGAACCAAACCAAAATCTGCTTCTGATGATAGAGATTTTGCTCTTGCTGGTTTACTCCAAGAA                                                                 ]
[+] EMBL CB642424             [                     ACATTTCGCCGCCGGCCGCCACGACGCCGGCGACCGCCACCGCCACCATGTCAGCGCTGGCTCCCGCCCCGAAGCTGCACCCGGACGAGCGGTCCAGCCTCCTCTCACTGCTCACCGCCGCCTCCCGCCCGCTCGCCGACATCGCCGCCGACTTCCTCGCGCGGGTCCCCCTCCAGCGCCGCCTCCGCGACCGCGCCGCGCTCGGGTTCCTCCTCGAGGACAAGAAGATGATTCATCCTACTGGTCGGGTGATTGCATTTGCTATTCTTCACCACAGTTATTCCTCGGAGCCGGAAAACCCAGATGGGCCACTTCTACTAAAAGCAGCCTGTGATGAAACATCAGAAAAATCGGAACGGGCATTAGTCCAACTTCAGTTGACTTCAGCAAGCGGAAACAATAACATTGA                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU172359             [                          TCGCCGCCGGCCGCCACGACGCCGGCGACCGCCACCGCCACCATGTCGGCGCTGGCTCCCGCCCCGAAGCTGCAGCCGGACGAGCGGTCCAACCTCCTCTCGCTGCTCGCCGCCGCCTCCCGCCCGCTCGCCGACATCGCCGCCGACTTCCTCGCGCGGTTCCCCCTCGAGCGCCGCCTCCGCGTCGGCGCCGCGCTCGGGTTCCTCCTCGAGGACAAGAAGATGCTTCATCCTACTGGTCGGTTGATTGCATTTGCTATTCTTCACCAGAGTTATTCCTCGGAGCCGGCAAACCCATATGTTCCACTTTTATTAAATGCAGCCTGTGATGAAACATCAGAAAAATCGGAACGGGCATTTGTCCAACTTTTGTTGACTTCAGCAAGTGGAAACAATAACATTGAGGTGCTGAAGCAGTCAGCTGTAGA                                                                                                                                                                                                                                                                                                                                    ]


>consensus_8574#0 AAAACCAAAAAAGCGAACGGAACATTTCGCCGCCGGCCGCCACGACGCCGGCGACCGCCA CCGCCACCATGTCGGCGCTGGCTCCCGCCCCGAAGCTGCAGCCGGACGAGCGGTCCAACC TCCTCTCGCTGCTCGCCGCCGCCTCCCGCCCGCTCGCCGACATCGCCGCCGACTTCCTCG CGCGGTTCCCCCTCGAGCGCCGCCTCCGCGTCGGCGCCGCGCTCGGGTTCCTCCTCGAGG ACAAGAAGATGCTTCATCCTACTGGTCGGTTGATTGCATTTGCTATTCTTCACCAGAGTT ATTCCTCGGAGCCGGCAAACCCATATGTTCCACTTTTATTAAATGCAGCCTGTGATGAAA CATCAGAAAAATCGGAACGGGCATTTGTCCAACTTTTGTTGACTTCAGCAAGTGGAAACA ATAACATTGAGGTGCTGAAGCAGTCAGCTGTAGATTACATAAATGGGTCTGATTCTGCAT CTCAGGCCTTACTTCCACGAGAACAGCTTGAGAAGCTATTCAGCAGTAATAGTGTACAGT CTCAGCCTCAGACCAGTAGTTTTAGTGCAGGAACTGTTAGATGTGCTATACCGGATCCAG ATGTACCTCAAAGCTGTGTAAATTCGTCAGAGCCTAGCATATCATTACCTGGAACCAAAC CAAAATCTGCTTCTGATGATAGAGATTTTGCTCTTGCTGGTTTACTCCAAGAAAAATCAT GGGGAAGATTGGGTCCGCAATGGATACGACCCACACCCCCAAGACTTCACATACTTGA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)