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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 974 fasta sequence
[GGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCGGCGACGGCGAGGGCCTCGATGTGCAACGGCAGCGGCGCGGCGGCCTCGATGCGCCTCGATATGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGATGGCGGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAACTAAAATAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGAGAAAGTCTCGTGTACTTTGAGTTACGCATTGTTTTTTTCCTCCTGAATCCTTCCTCTATTCATATTAAAGTTACAAACTCAAATTGGGAATCTCCTCCTGGTATTTCTCTGTTCAGATTAAAGCAGCAAACTCAAATTGGGTGCCTCCGAGCAAGGCAGGCTCGATGCACGATGGCAGCGGCACGGCGGCCTCGATGCGCGACGGCATCAGCAGGCTCGATGCACGACGGCGGCAACAGCCTCGATGCGTGACGGCAGCGTGGCGGCCTCGATGCGCGACGGTGGCGGCGGCGCGGCGGCCTCGATGCACGACGGCGGCAACAACCTCGATGCGAGACGGCGGCGCGATGGCCTCGATGGGCGACGGCGGCAGATGGAAGAGAGGAGACCTCATTTTTGTTAGCCCGATCATACCCCTGTTAAACCAACGGTTAGATTAGATTGGTACCTCGTGATACCTCTTTAAGGATGGGAAAAATGCTCTATTATAAAAGATGCTTGTTTCATCTCAAATCATAGGTTAATCATTGTGTCATGTACTGCAAGCCTCCAAATTTGCAATGCAGCTCCCTTGTCTTAGAA]
[+] EMBL AK108675 [GGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCGGCGACGGCGAGGGCCTCGATGTGCAACGGCAGCGGCGCGGCGGCCTCGATGCGCCTCGATATGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGATGGCGGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAACTAAAATAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGAGAAAGTCTCGTGTACTTTGAGTTACGCATTGTTTTTTTCCTCCTGAATCCTTCCTCTATTCATATTAAAGTTACAAACTCAAATTGGGAATCTCCTCCTGGTATTTCTCTGTTCAGATTAAAGCAGCAAACTCAAATTGGGTGCCTCCGAGCAAGGCAGGCTCGATGCACGATGGCAGCGGCACGGCGGCCTCGATGCGCGACGGCATCAGCAGGCTCGATGCACGACGGCGGCAACAGCCTCGATGCGTGACGGCAGCGTGGCGGCCTCGATGCGCGACGGTGGCGGCGGCGCGGCGGCCTCGATGCACGACGGCGGCAACAACCTCGATGCGAGACGGCGGCGCGATGGCCTCGATGGGCGACGGCGGCAGATGGAAGAGAGGAGACCTCATTTTTGTTAGCCCGATCATACCCCTGTTAAACCAACGGTTAGATTAGATTGGTACCTCGTGATACCTCTTTAAGGATGGGAAAAATGCTCTATTATAAAAGATGCTTGTTTCATCTCAAATCATAGGTTAATCATTGTGTCATGTACTGCAAGCCTCCAAATTTGCAATGCAGCTCCCTTGTCTTAGAA]
[-] EMBL CB967478 [ CGGCATGGCGGCCTCGATGCGCGATGGCGGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAACTAAAAAAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGAGAAAGTCTCGTGTA ]
consensusID : consensus_8580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 457 fasta sequence
[CGAGAGGGAAAAATCGTCGGGGAAGAGCAGCGAGAGATGGCGGCGAGGGCACGGGCACATTCCCGGCGGCGG-CTCGATGCGCGACGGCAGCAGC-CGACGGCCTNTGATGCGCGATGGCAGCAGCTGTGGGCTCGAGGCGGCA--GGCCTCGATGCTCGGCGGCA--GGCGANTNCGATGCGCGGCGGC-GANGGGGCGGCAACGGCGGCCTCTTCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGG-A--NACGGCCTTCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAGTTTTGCTGAACCAAATGTAAATNGCTAAATNGTTGATTACCAGCTTACTGTTGAATTTGCAAGTTTCGTATTGATGAACTAAAAAACAAAGGTTCAGAAATTGGANCTCCTGTAAATAATATCGATTCAAGTCTGGTGTACTTTGAGTTAAAAAAAAAA]
[+] EMBL C29010 [CGAGAGGGAAAAATCGTCGGGGAAGAGCAGCGAGAGATGGCGGCGAGGGCACGGGCACATTCCCGGCGGCGG CTCGATGCGCGACGGCAGCAGC CGACGGCCTNTGATGCGCGATGGCAGCAGCTGTGGGCTCGAGGCGGCA GGCCTCGATGCTCGGCGGCA GGCGANTNCGATGCGCGGCGGC GANGGGGCGGCAACGGCGGCCTCTTCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGG A NACGGCCTTCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAGTTTTGCTGAACCAAATGTAAATNGCTAAATNGTTGATTACCAGCTTACTGTTGAATTTGCAAGTTTCGTATTGATGAACTAAAAAACAAAGGTTCAGAAATTGGANCTCCTGTAAATAATATCGATT ]
[+] EMBL AU172378 [ CAGCGAGAGATGGCGGCGAGGGCACGGGCACATTCCCGGCGGCGGCCTCGATGCGCGACGGCAGCAGCGCGGCGGCCT TGATGCGCGATGGCAGCAGCTGTGGGCTCGAGGCGGCAGCGGCCTCGATGCTCGGCGGCAGCGGCGAGCTCGATGCGCGGCGGCGGAGGCGGCGGCAACGGCGGCCTC TCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGGCAGCGACGGCC TCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAG TTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTGTTGAA TTGCAAGTTTCGTATTGATGAACTAAAAAAC AAGGTTCAGAAATTGGATCTGCTGTAAATAATATCGATTCAAGTCTGGTGTACTTTGAGTTAAAAAAAAAA]
consensusID : consensus_8580#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence
[TCCTTCCCTTTTCACGAGAGGAAAACATTGCTGGGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCAGGACGGCGAGGACCTCGATGTGCGACGGCAGCGGCGCGGCGGGCTCGACGGGCGACGGCCTCGATGTGCGACGGCGGCGGCGCGGCGGCCTGGATGCGCCTCGATGTGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGACGGCAGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTATGAATTTTGTTGACGGCGGTGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAATAAAAAAA]
[+] EMBL AK063213 [TCCTTCCCTTTTCACGAGAGGAAAACATTGCTGGGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCAGGACGGCGAGGACCTCGATGTGCGACGGCAGCGGCGCGGCGGGCTCGACGGGCGACGGCCTCGATGTGCGACGGCGGCGGCGCGGCGGCCTGGATGCGCCTCGATGTGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGACGGCAGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTATGAATTTTGTTGACGGCGGTGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAATAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8580#0 ---------------------------------GGGAAGAGCAGCGAGAGATGGCGGCAA 27
consensus_8580#2 TCCTTCCCTTTTCACGAGAGGAAAACATTGCTGGGGAAGAGCAGCGAGAGATGGCGGCAA 60
consensus_8580#1 --------------CGAGAGGGAAAAATCGTCGGGGAAGAGCAGCGAGAGATGGCGGCGA 46
************************* *
consensus_8580#0 GAGGCAGGGGCA-GCGAGAGATTGCGG---------------------CGACGGC----- 60
consensus_8580#2 GAGGCAGGGGCA-GCGAGAGATTGCAGGACGGCGAGGACCTCGATGTGCGACGGCAGCGG 119
consensus_8580#1 G-GGCACGGGCACATTCCCGGCGGCGG------------CTCGATGCGCGACGGCAGCAG 93
* **** ***** * ** * *******
consensus_8580#0 -------------------GAGGGCCTC-GATGTGCAACGGCAGCGGCGCGGCGGCCTCG 100
consensus_8580#2 CGCGGCGGGCTCGACGGGCGACGGCCTC-GATGTGCGACGGCGGCGGCGCGGCGGCCTGG 178
consensus_8580#1 C-----------------CGACGGCCTNTGATGCGCGATGGCAGCAGC--TGTGGGCTCG 134
** ***** **** ** * *** ** ** * ** ** *
consensus_8580#0 ATGCGCCTCGATATGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGATGGCG-----GC 155
consensus_8580#2 ATGCGCCTCGATGTGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGACGGCA-----GC 233
consensus_8580#1 AGGCGGCAGGCCTCGATGCT-CGGCGGCA-GGCGANTNCGATGCGCGGCGGCGANGGGGC 192
* *** * * * * * ****** **** ********* *** **
consensus_8580#0 GGCAGCGGCGGCCTCT-CTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCA 214
consensus_8580#2 GGCAGCGGCGGCCTCT-CTTTTCCTCCTTTCTGCTATGAATTTTGTTGACGGCGGTGGCA 292
consensus_8580#1 GGCAACGGCGGCCTCTTCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGGAN 252
**** *********** ** *************** ***** *********** * **
consensus_8580#0 ACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTT-GCTGAACC 273
consensus_8580#2 ACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTT-GCTGAACC 351
consensus_8580#1 ACGGC--CTTCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAGTTTTGCTGAACC 310
*** * * * ************** ******************** *** ********
consensus_8580#0 AAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATT-GCAAGTTTCGTATT 332
consensus_8580#2 AAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATT-GCAAGTTTCGTATT 410
consensus_8580#1 AAATGTAAATNGCTAAATNGTTGATTACCAGCTTACTGTTGAATTTGCAAGTTTCGTATT 370
********** ******* ****************** ******* **************
consensus_8580#0 GATGAACTAAAATAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGA 392
consensus_8580#2 GATGAATAAAAAAA---------------------------------------------- 424
consensus_8580#1 GATGAACTAAAAAACAAAGGTTCAGAAATTGGANCTCCTGTAAATAATATCGATTCA--- 427
****** **** *
consensus_8580#0 GAAAGTCTCGTGTACTTTGAGTTACGCATTGTTTTTTTCCTCCTGAATCCTTCCTCTATT 452
consensus_8580#2 ------------------------------------------------------------
consensus_8580#1 ---AGTCTGGTGTACTTTGAGTTAAAAAAAAAA--------------------------- 457
consensus_8580#0 CATATTAAAGTTACAAACTCAAATTGGGAATCTCCTCCTGGTATTTCTCTGTTCAGATTA 512
consensus_8580#2 ------------------------------------------------------------
consensus_8580#1 ------------------------------------------------------------
consensus_8580#0 AAGCAGCAAACTCAAATTGGGTGCCTCCGAGCAAGGCAGGCTCGATGCACGATGGCAGCG 572
consensus_8580#2 ------------------------------------------------------------
consensus_8580#1 ------------------------------------------------------------
consensus_8580#0 GCACGGCGGCCTCGATGCGCGACGGCATCAGCAGGCTCGATGCACGACGGCGGCAACAGC 632
consensus_8580#2 ------------------------------------------------------------
consensus_8580#1 ------------------------------------------------------------
consensus_8580#0 CTCGATGCGTGACGGCAGCGTGGCGGCCTCGATGCGCGACGGTGGCGGCGGCGCGGCGGC 692
consensus_8580#2 ------------------------------------------------------------
consensus_8580#1 ------------------------------------------------------------
consensus_8580#0 CTCGATGCACGACGGCGGCAACAACCTCGATGCGAGACGGCGGCGCGATGGCCTCGATGG 752
consensus_8580#2 ------------------------------------------------------------
consensus_8580#1 ------------------------------------------------------------
consensus_8580#0 GCGACGGCGGCAGATGGAAGAGAGGAGACCTCATTTTTGTTAGCCCGATCATACCCCTGT 812
consensus_8580#2 ------------------------------------------------------------
consensus_8580#1 ------------------------------------------------------------
consensus_8580#0 TAAACCAACGGTTAGATTAGATTGGTACCTCGTGATACCTCTTTAAGGATGGGAAAAATG 872
consensus_8580#2 ------------------------------------------------------------
consensus_8580#1 ------------------------------------------------------------
consensus_8580#0 CTCTATTATAAAAGATGCTTGTTTCATCTCAAATCATAGGTTAATCATTGTGTCATGTAC 932
consensus_8580#2 ------------------------------------------------------------
consensus_8580#1 ------------------------------------------------------------
consensus_8580#0 TGCAAGCCTCCAAATTTGCAATGCAGCTCCCTTGTCTTAGAA 974
consensus_8580#2 ------------------------------------------
consensus_8580#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||