These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1070 fasta sequence [GCCGAAACCCTCCTCCTCTTCCTCTCTGCCTTTCTTCCGCTCCACGCCGCCCTCCGCCGCCGCCGCCATGGCTGATCCGCGGCTGTTCTCGTCGGGATCCGGCACCCGCGACG-ACCGG-ACGGACGCCTCCGGCAGGCGGCTGTACAACCCCTACCAGGACCTGAATATCCCCTACAAGCAGCTCTACGACCTCCCCACCTCCCCGGAGTTCCTCTTCCAGGAGGAGTCGCTCGCCCAGCGCCGCTCCTGGGGCGAGAACCTCACCTACTACACCGGCATAGGCTACCTCTCGGGCGCCGTCGCCGGCGCCGCCGTCGGCCTCCGCGACGCCGCGCGCAACGCCGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTCAACTCGTGCGGCAGCAAC-GGCCGCCGCATGGGGAACACGCTCGGGGTCATCGGCCTGCTCTACGCCGGGATCGAGAGCGGCATGGTCGCCGTCCGCGACCGCGACGACTGGATCAACAGCGTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCCGCCAACGGGCCGCGCTCCGCCGCCGTCGCGGGCGCCATCGGTGGGGTCCTCGCCGGCGCCGCCATGGCAGGCAAGCAGGCGGCGAAGAGATATGTGCCTGCCCTCTGATTCGTCCGCACGGTATTCTCTCTGCTGTGATAAGAAATGGTCGAATCAATTGGTCGCCAAAAGGAATGTCATTTCTTCGTTTTGCTCTCCTGGTTAATTTATTATTGGAGAAGGGTTTTCTTCTCGACATTATATTTTAGCGTTATGTTACATGTAATCGATATGATCGGATCAGATCACTAAATTTTTGGCCTATGTTGCAATGTAACGTCTTCTCGAGTAGCTAGTTAGCTGGTACCAACACAATAATACATACTTTTACGTTATGCTGATGGTGAGTCCGTGACAATGTGAAATGTAATGTTCATTGTAGTGTAGTTTTCCTAGATTATTATGGTGTGTGTTTCACTTGCGATGAAACAATATGCCATAAAAGAGTAGGCTAATGTTTGCACATTTCTAATCTATCTATGGATGC] [+] EMBL AK103851 [GCCGAAACCCTCCTCCTCTTCCTCTCTGCCTTTCTTCCGCTCCACGCCGCCCTCCGCCGCCGCCGCCATGGCTGATCCGCGGCTGTTCTCGTCGGGATCCGGCACCCGCGACG ACCGG ACGGACGCCTCCGGCAGGCGGCTGTACAACCCCTACCAGGACCTGAATATCCCCTACAAGCAGCTCTACGACCTCCCCACCTCCCCGGAGTTCCTCTTCCAGGAGGAGTCGCTCGCCCAGCGCCGCTCCTGGGGCGAGAACCTCACCTACTACACCGGCATAGGCTACCTCTCGGGCGCCGTCGCCGGCGCCGCCGTCGGCCTCCGCGACGCCGCGCGCAACGCCGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTCAACTCGTGCGGCAGCAAC GGCCGCCGCATGGGGAACACGCTCGGGGTCATCGGCCTGCTCTACGCCGGGATCGAGAGCGGCATGGTCGCCGTCCGCGACCGCGACGACTGGATCAACAGCGTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCCGCCAACGGGCCGCGCTCCGCCGCCGTCGCGGGCGCCATCGGTGGGGTCCTCGCCGGCGCCGCCATGGCAGGCAAGCAGGCGGCGAAGAGATATGTGCCTGCCCTCTGATTCGTCCGCACGGTATTCTCTCTGCTGTGATAAGAAATGGTCGAATCAATTGGTCGCCAAAAGGAATGTCATTTCTTCGTTTTGCTCTCCTGGTTAATTTATTATTGGAGAAGGGTTTTCTTCTCGACATTATATTTTAGCGTTATGTTACATGTAATCGATATGATCGGATCAGATCACTAAATTTTTGGCCTATGTTGCAATGTAACGTCTTCTCGAGTAGCTAGTTAGCTGGTACCAACACAATAATACATACTTTTACGTTATGCTGATGGTGAGTCCGTGACAATGTGAAATGTAATGTTCATTGTAGTGTAGTTTTCCTAGATTATTATGGTGTGTGTTTCACTTGCGATGAAACAATATGCCATAAAAGAGTAGGCTAATGTTTGCACATTTCTAATCTATCTATGGATGC] [+] EMBL OSR01351A [ gaACGTACCGGTACGGACGCCTCCGGCAGGCGGCTGTACAACCCCTACCAGGACCTGAATATCCCCTACAAGCAGCTCTACGACCTCCCCACCTCCCCGGAGTTCCTCTTCCAGGAGGAGTCGCTCGCCCAGCGCCGCTCCTGGGGCGAGNACCTCACCTACTACACCGGCATAGGCTACCTCTCGGGCGCCGTCGCCGG GGCGCCGTCGG CTCCGCGACGCCGCGCGCAACG CGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTCAAGTTGTGCGGCAG AACGGGCCGCCGAATGGGGAACACGGTCGGGGTCATCGGCCTGCTCTACGGCGGGATCGAGAGCGGaa ] [+] EMBL C28331 [ CTACACCGGCATAGGCTACCTCTCGGGCGCCGTCGCCGGCG CGCCGTCGGCCTCCGCGACGCCGCGCGCAACGCCGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTCAACTCGTGCGGCA NAAC GGCCGCCGCATGGGGAACACGCTCGGGGTCATCGGCCTGCTCTACGCCGGGATCGAGAGCGGCATGGTCGCCGTCCGCNACCGCNACGACTGGNTCAACAGCGTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCCGCCAACGGGCCGCGCTCCGNCGNCGTCGCGGGCGCCATCGGTGGGGTCCTCGCCGGCGGCG CATGGCAGGCAAGCAGGCGGCGAAGAG ATGTNCCTGCCCTCTGATTTGTCCGNACGGTATTCTCTCTGCTGTGATAAGAAATGGTCGAATCAATTTGTTGC ] [+] EMBL AU101596 [ GGCATAGGCTACCTTTCGGGCGCCGTCGCCGGCNCCGCCGTCGGCNTCCGCGACGCCGCGCGCAACGCCGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTCAACTCGTGCGGCAGCAAC GGCCGCCGCATGGGGAACACGCTCGGGGTCATCGGCCTGCTCTACGCCGGGATCGAGAGCGGCATGGTCGCCGTCCGCGACCGCGACGACTGGATCAACAGCGTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCCGCCAACGGGCCGCGCTCCGCCGCCGTCGCGGGCGCCATCGGTGGGGTCCTCGCCGGCGCCGCCATGGCAGGCAAGCAGGCGGCGAAGAGATATGTGCCTGCCCTCTGATTCGTCCGCACGGTATTCTCTCTGCTGTGATAAGAAATGGTCGAATCAATTGGTCGCCAAAAGGAATGTCATTTCTTCGTTTTGCTCTCCTGGTTAATTTATTATTGGAGAAGGGTTTTCTTCTCGACATTATATTTTAGCGTTATGTTACATGTAATCGATATGATCGGATCAGATCACTAAATTTTTGGCCTATGTTGCAATGTAACGTCTTCTCGAGTAGCTAGTTAGCTGGTACCAACACAATAATACATACTTTTACGTTAaaaaa ] consensusID : consensus_8584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 925 fasta sequence [CAAACCTACCTAAAGGCAACTCTTTTTCCTTCCCCACTCCGGGCGTCTCGCCGCCGACCACAGCCCTCCCCCCCAAACCCTAGCCCTCCCGCCGCCATGGCCGACCCGCGGCTGTTCCCGTCGGGATCCAACTTCTCCGGCGACGCCTCCGGCCCCGGCCGCCGGAAGTACAACCCCTACCACGACCTCAGCACCCCCTACAGCTACCAGACCCTCTACGACCTCCCCACCTCGCCGGAGTTCCTCTTCCAGGAGGAGTCCGCGGCGCAGCGCCGCTCGTGGGGGGAGAACCTCACCTACTACACGGGCGTCGGGTACCTCTCCGGCGCCGTCGCCGGCGCCGCCCTCGGCCTCCGCGACGCCGCCGCGGGCGCGGAGCCCGGGGACACCGCCAAGATCCGCGCCAACCGCGTCCTCAACTCCTGCGGCGGCGGCGGCCGCCGGCTCGGCAACAGGCTGGGCGTCATCGGGCTGATGTACGCCGGGATGGAGAGCGCCATGGTCGCCGCGCGCGACCGCGACGACTGGGTCAACAGCGTCGCGGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCGGCGAACGGGCCGCGGTCCGCCGCCGTCGCTGGCGCCATCGGAGGGGTCCTCGCCGGCGCCGCCATGGCCGGCAAGCAGCTCGCCAAGCGATATGTGCCTGCCATATGAGGCTTCGCCGCGGTATCCCTTGTTCACTCTGATCAAAGGATCGAATCAATCAATCCGTCGAAAAAAAAAATGGTCTTCTGTTTGTTTGTCTGATCTCCAGGTTAGCTCATCGATTTGGGAATGGTTTAGCCATCTCGAGAAAAAAAATATGTGATGTTTAGTCGTATGTGGATGGTTTGAATGGAAAATTTTGACCTCTCCTTGCAATGTTGTAACATCATGTTTAATGTATAACTGCATA] [+] EMBL AK107812 [CAAACCTACCTAAAGGCAACTCTTTTTCCTTCCCCACTCCGGGCGTCTCGCCGCCGACCACAGCCCTCCCCCCCAAACCCTAGCCCTCCCGCCGCCATGGCCGACCCGCGGCTGTTCCCGTCGGGATCCAACTTCTCCGGCGACGCCTCCGGCCCCGGCCGCCGGAAGTACAACCCCTACCACGACCTCAGCACCCCCTACAGCTACCAGACCCTCTACGACCTCCCCACCTCGCCGGAGTTCCTCTTCCAGGAGGAGTCCGCGGCGCAGCGCCGCTCGTGGGGGGAGAACCTCACCTACTACACGGGCGTCGGGTACCTCTCCGGCGCCGTCGCCGGCGCCGCCCTCGGCCTCCGCGACGCCGCCGCGGGCGCGGAGCCCGGGGACACCGCCAAGATCCGCGCCAACCGCGTCCTCAACTCCTGCGGCGGCGGCGGCCGCCGGCTCGGCAACAGGCTGGGCGTCATCGGGCTGATGTACGCCGGGATGGAGAGCGCCATGGTCGCCGCGCGCGACCGCGACGACTGGGTCAACAGCGTCGCGGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCGGCGAACGGGCCGCGGTCCGCCGCCGTCGCTGGCGCCATCGGAGGGGTCCTCGCCGGCGCCGCCATGGCCGGCAAGCAGCTCGCCAAGCGATATGTGCCTGCCATATGAGGCTTCGCCGCGGTATCCCTTGTTCACTCTGATCAAAGGATCGAATCAATCAATCCGTCGAAAAAAAAAATGGTCTTCTGTTTGTTTGTCTGATCTCCAGGTTAGCTCATCGATTTGGGAATGGTTTAGCCATCTCGAGAAAAAAAATATGTGATGTTTAGTCGTATGTGGATGGTTTGAATGGAAAATTTTGACCTCTCCTTGCAATGTTGTAACATCATGTTTAATGTATAACTGCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8584#0 -------------GCCGAAACCCTCCTCCTCTTCCTCTCTGCCTTTCTT-CCGCTCCACG 46 consensus_8584#1 CAAACCTACCTAAAGGCAACTCTTTTTCCTTCCCCACTCCGGGCGTCTCGCCGCCGACCA 60 ** * * **** ** *** * *** **** * consensus_8584#0 CCGCCCTCCGCCGC---------------CGCCGCCATGGCTGATCCGCGGCTGTTCTCG 91 consensus_8584#1 CAGCCCTCCCCCCCAAACCCTAGCCCTCCCGCCGCCATGGCCGACCCGCGGCTGTTCCCG 120 * ******* ** * ************ ** ************ ** consensus_8584#0 TCGGGATCCGGCACCCGCGACGACCGGACGGACGCCTCCGGCAGGCGGCTGTACAACCCC 151 consensus_8584#1 TCGGGATCCAACTTCTCCGGCGAC---GCCTCCGGCCCCGGCCGCCGGAAGTACAACCCC 177 ********* * * ** **** * ** * ***** * *** ********** consensus_8584#0 TACCAGGACCTGAATATCCCCTACA---AGCAG---CTCTACGACCTCCCCACCTCCCCG 205 consensus_8584#1 TACCACGACCTCAGCACCCCCTACAGCTACCAGACCCTCTACGACCTCCCCACCTCGCCG 237 ***** ***** * * ******** * *** ******************** *** consensus_8584#0 GAGTTCCTCTTCCAGGAGGAGTCGCTCGCCCAGCGCCGCTCCTGGGGCGAGAACCTCACC 265 consensus_8584#1 GAGTTCCTCTTCCAGGAGGAGTCCGCGGCGCAGCGCCGCTCGTGGGGGGAGAACCTCACC 297 *********************** ** *********** ***** ************ consensus_8584#0 TACTACACCGGCATAGGCTACCTCTCGGGCGCCGTCGCCGGCGCCGCCGTCGGCCTCCGC 325 consensus_8584#1 TACTACACGGGCGTCGGGTACCTCTCCGGCGCCGTCGCCGGCGCCGCCCTCGGCCTCCGC 357 ******** *** * ** ******** ********************* *********** consensus_8584#0 GACGCCGCGCGCAACGCCGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTC 385 consensus_8584#1 GACGCCGCCGCGGGCGCGGAGCCCGGGGACACCGCCAAGATCCGCGCCAACCGCGTCCTC 417 ******** *** ************************** ** ************ consensus_8584#0 AACTCGTGCGGCAGCAACGGCCGCCGCATGGGGAACACGCTCGGGGTCATCGGCCTGCTC 445 consensus_8584#1 AACTCCTGCGGCGGCGGCGGCCGCCGGCTCGGCAACAGGCTGGGCGTCATCGGGCTGATG 477 ***** ****** ** ********* * ** **** *** ** ******** *** * consensus_8584#0 TACGCCGGGATCGAGAGCGGCATGGTCGCCGTCCGCGACCGCGACGACTGGATCAACAGC 505 consensus_8584#1 TACGCCGGGATGGAGAGCGCCATGGTCGCCGCGCGCGACCGCGACGACTGGGTCAACAGC 537 *********** ******* *********** ****************** ******** consensus_8584#0 GTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCCGCCAACGGGCCGCGCTCCGCC 565 consensus_8584#1 GTCGCGGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCGGCGAACGGGCCGCGGTCCGCC 597 *** * ******************************** ** *********** ****** consensus_8584#0 GCCGTCGCGGGCGCCATCGGTGGGGTCCTCGCCGGCGCCGCCATGGCAGGCAAGCAGGCG 625 consensus_8584#1 GCCGTCGCTGGCGCCATCGGAGGGGTCCTCGCCGGCGCCGCCATGGCCGGCAAGCAGCTC 657 ******** *********** ************************** ********* consensus_8584#0 GCGAAGAGATATGTGCCTGCCCTCTGATTCGTCCGCACGGTATTCTCTCT--GCTGTGAT 683 consensus_8584#1 GCCAAGCGATATGTGCCTGCCATATGAGGCTTCGCCGCGGTATCCCTTGTTCACTCTGAT 717 ** *** ************** * *** * ** * ****** * * * ** **** consensus_8584#0 --AAGAAATGGTCGAATCAATTGGTCGCCAAAAGGAATG-TCATTTCTTCGTTT---TGC 737 consensus_8584#1 CAAAGGATCGAATCAATCAATCCGTCGAAAAAAAAAATGGTCTTCTGTTTGTTTGTCTGA 777 *** * * ******* **** **** **** ** * * ** **** ** consensus_8584#0 TCTCCTGGTTAATTTATT-ATTGGAGAAGGGTTT--TCTTCTCGACATTATATTT---TA 791 consensus_8584#1 TCTCCAGGTTAGCTCATCGATTTGGGAATGGTTTAGCCATCTCGAGAAAAAAAATATGTG 837 ***** ***** * ** *** * *** ***** * ****** * * * * * consensus_8584#0 GCGTTATGTTACATGTAATCGATATGATCGGATCAGATCACTAAATTTTTGGCCTATGTT 851 consensus_8584#1 ATGTTTAGTCGTATGTGGATGGTTTGAATGGA--AAATTTTGACCTCTCCTTGCAATGTT 895 *** ** **** * * *** *** * ** * * * * ***** consensus_8584#0 GCAATGTAACGTCTTCTCGAGTAGCTAGTTAGCTGGTACCAACACAATAATACATACTTT 911 consensus_8584#1 GTAACATCATGT-TTAATGTATAACTGCATA----------------------------- 925 * ** * * ** ** * ** ** ** consensus_8584#0 TACGTTATGCTGATGGTGAGTCCGTGACAATGTGAAATGTAATGTTCATTGTAGTGTAGT 971 consensus_8584#1 ------------------------------------------------------------ consensus_8584#0 TTTCCTAGATTATTATGGTGTGTGTTTCACTTGCGATGAAACAATATGCCATAAAAGAGT 1031 consensus_8584#1 ------------------------------------------------------------ consensus_8584#0 AGGCTAATGTTTGCACATTTCTAATCTATCTATGGATGC 1070 consensus_8584#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||