These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8585#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1599 fasta sequence [GCCAACATCTGCCGAGGAAGAACAACCGCAATGCTCTACCCCTATTGCATTATCTCCTTGGGATGAAACAAGTGACTATCAAGGTGAAGCTGTTGATTCTGCTCTATGGGGTGTCCAAGATGACCAAAACAATGAAATGTGGTCATTGTCTTCACCAACACCTACTCTCCAACCTTCAGGTATTGGAGCTGATACCAAAGGTGCTTCCTGTGCTATAGAAGAGGTGATAGTAGCCCAAGGAAATAGTGGTGTTGTTGAACCGTCACCAGCACTGGAGAAGAAAAGGATTGAAAAAGTACCAAGTGCTTCCATAGATCGTGGAGTACCAGAGCAGGTAAAACCAAAATCAGATGCTGCATTATCTCCAGAAGAGAGCAGAAAACCTTCAGGTTTGCAACTATCAAGCACATATCTACAAGGGAGCACAAAATCTTCAGGTTTGCCACCGTCAGGCACATCTCTAGATGGGGGCATAGAACCTTCAGGTTTGCTACCTTCAGGAACTTCTTTGGAGTGGGGTACAAAAATTTCAGGTGTGCAATCCTCGGCCTCATCTCTAGAGGGGAGCAAAAAGGCTTTTGTTAGGCAACCATCAGGCTCTTCACTAGAGGGAAACACAAAAGCGTCAGGTAGGCAGCCGTCAGGTTCATCTATAGAGGGGAGTAAGAAACCTTCTGATAGGCAGCCATCAGGTGCATCTCAAGAGGGGAATACAAAGCCTTCAGGCTGGCAACAATCTGTGTCGTCTCTTGAAGGTGGCACGAAACCTTCAGGCTGGAAACCTTCAATTTCTATAGACACGAATACAAAAGCTTCAGGTTGGCTGCGATCGAGCTCATCTCCTGATGTGGGCAGAAAAGCTTCAGCATGGCAATCATCAGGTTCTTCGCCTGTTGCAGGGAGCTCAAAAGCATCAGGTTGGCAGCCATCACCTCGCGAGAGCTCGAAATCTAAGCCTAATTCCACATGGGGTGCCGGCCAAAGCCGCAACTCGTCTTCGCACCAATCAACAACACCAACAGCTAAATACTCATCAGAAACCCCAAGGAGACAAGGAAACAACAACACAAATTCTGCTGGCTGGGGAGACTCTCTCGGAAACAAGAGCTGGCATTCACCCTCAGGCAATGCGAGCAGCCGAGGCAGCCATTCTAGCCACCACCATGACCGGCACAATCAGAGCAGCGAACCATGGCGTGGTGGCTCAAATCATTCCAGGAGATCAGATCATCGTCAAGAACATGGCAACGGTGGCTCGTCGAGATCATCGTCGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCACATTTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTATTTAACCTTCTCGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGAGTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTGCGGCCACGACTGTAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCC] [+] EMBL AK060521 [GCCAACATCTGCCGAGGAAGAACAACCGCAATGCTCTACCCCTATTGCATTATCTCCTTGGGATGAAACAAGTGACTATCAAGGTGAAGCTGTTGATTCTGCTCTATGGGGTGTCCAAGATGACCAAAACAATGAAATGTGGTCATTGTCTTCACCAACACCTACTCTCCAACCTTCAGGTATTGGAGCTGATACCAAAGGTGCTTCCTGTGCTATAGAAGAGGTGATAGTAGCCCAAGGAAATAGTGGTGTTGTTGAACCGTCACCAGCACTGGAGAAGAAAAGGATTGAAAAAGTACCAAGTGCTTCCATAGATCGTGGAGTACCAGAGCAGGTAAAACCAAAATCAGATGCTGCATTATCTCCAGAAGAGAGCAGAAAACCTTCAGGTTTGCAACTATCAAGCACATATCTACAAGGGAGCACAAAATCTTCAGGTTTGCCACCGTCAGGCACATCTCTAGATGGGGGCATAGAACCTTCAGGTTTGCTACCTTCAGGAACTTCTTTGGAGTGGGGTACAAAAATTTCAGGTGTGCAATCCTCGGCCTCATCTCTAGAGGGGAGCAAAAAGGCTTTTGTTAGGCAACCATCAGGCTCTTCACTAGAGGGAAACACAAAAGCGTCAGGTAGGCAGCCGTCAGGTTCATCTATAGAGGGGAGTAAGAAACCTTCTGATAGGCAGCCATCAGGTGCATCTCAAGAGGGGAATACAAAGCCTTCAGGCTGGCAACAATCTGTGTCGTCTCTTGAAGGTGGCACGAAACCTTCAGGCTGGAAACCTTCAATTTCTATAGACACGAATACAAAAGCTTCAGGTTGGCTGCGATCGAGCTCATCTCCTGATGTGGGCAGAAAAGCTTCAGCATGGCAATCATCAGGTTCTTCGCCTGTTGCAGGGAGCTCAAAAGCATCAGGTTGGCAGCCATCACCTCGCGAGAGCTCGAAATCTAAGCCTAATTCCACATGGGGTGCCGGCCAAAGCCGCAACTCGTCTTCGCACCAATCAACAACACCAACAGCTAAATACTCATCAGAAACCCCAAGGAGACAAGGAAACAACAACACAAATTCTGCTGGCTGGGGAGACTCTCTCGGAAACAAGAGCTGGCATTCACCCTCAGGCAATGCGAGCAGCCGAGGCAGCCATTCTAGCCACCACCATGACCGGCACAATCAGAGCAGCGAACCATGGCGTGGTGGCTCAAATCATTCCAGGAGATCAGATCATCGTCAAGAACATGGCAACGGTGGCTCGTCGAGATCATCGTCGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCACATTTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTATTTAACCTTCTCGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGAGTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTGCGGCCACGACTGTAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCC] [+] EMBL AF140485 [ GTCTTCGCACCAATCAACAACACCAACAGCTAAATACTCATCAGAAACCCCAAGGAGACAAGGAAACAACAACACAAATTCTGCTGGCTGGGGAGACTCTCTCGGAAACAAGAGCTGGCATTCACCCTCAGGCAATGCGAGCAGCCGAGGCAGCCATTCTAGCCACCACCATGACCGGCACAATCAGAGCAGCGAACCATGGCGTGGTGGCTCAAATCATTCCAGGAGATCAGATCATCGTCAAGAACATGGCAACGGTGGCTCGTCGAGATCATCGTCGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTC ] [+] EMBL AA752314 [ AACACCAACAGCTAAATACTCATCAGAAACCCC AGGAGACAAGGAGACAACAACACAAATTCTGCTGGCTGGGGAGACTCTCTCGGAAACACGAGCTGGCATTCACCCTCAGGCAATGCGAGCAGCCGAGGCAGCCATTCTAGCCACCACCATGACCGGCACATTCAGAGCAGCGAACCATGG ] consensusID : consensus_8585#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [CGGCCGCCGGGCGGCGCCGCGCGAGTCTCACTCCCCGTCTCGATCCACTCATCCGGCCTACGTCTCGCCTCAGCCGGCCCGCCGAGCCCACGCACGCCGCGGCCCGCGTGCGAAGCAGCCGCCGCCGAACGCGCCTCCGCCGGCCGCGGCGCCCGCCGCGCAGGCACCGATCGCCCGCGCCCCCACTCGGCCCCCACCGCGCTCTAAGGCGGACCGCTGAGAGCCGATGAGAGGCCGCCCCGCGCGACCGGATTAGATTCTTTTTTGCTCTCCCAAAAAAAAAACCCCAGGGGNCAACCCGGTGGGCTCTGTCCGAGATCATTGTTGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCGCATTTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTATTTAACCTTCTGGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGAGTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTACGGCCCCGACTGTAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCCTGTTAGGTTTAGTGGAAAAAAAAAAA] [-] EMBL CA763316 [CGGCCGCCGGGCGGCGCCGCGCGAGTCTCACTCCCCGTCTCGATCCACTCATCCGGCCTACGTCTCGCCTCAGCCGGCCCGCCGAGCCCACGCACGCCGCGGCCCGCGTGCGAAGCAGCCGCCGCCGAACGCGCCTCCGCCGGCCGCGGCGCCCGCCGCGCAGGCACCGATCGCCCGCGCCCCCACTCGGCCCCCACCGCGCTCTAAGGCGGACCGCTGAGAGCCGATGAGAGGCCGCCCCGCGCGACCGGATTAGATTCTTTTTTGCTCTCCCAAAAAAAAAACCCCAGGGGNCAACCCGGTGGGCTCTGTCCGAGATCATTGTTGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCGCATTTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTATTTAACCTTCTGGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGAGTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTACGGCCCCGACTGTAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCCTGTTAGGTTTAGTGGAAAAAAAAAAA] [-] EMBL CA763317 [CGGCCGCCGGGCGGCGCCGCGCGAGTCTCACTCCCCGTCTCGATCCACTCATCCGGCCTACGTCTCGCCTCAGCCGGCCCGCCGAGCCCACGCACGCCGCGGCCCGCGTGCGAAGCAGCCGCCGCCGAACGCGCCTCCGCCGGCCGCGGCGCCCGCCGCGCAGGCACCGATCGCCCGCGCCCCCACTCGGCCCCCACCGCGCTCTAAGGCGGACCGCTGAGAGCCGATGAGAGGCCGCCCCGCGCGACCGGATTAGATTCTTTTTTGCTCTCCCAAAAAAAAAACCCCAGGGGNCAACCCGGTGGGCTCTGTCCGAGATCATTGTTGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCGCATTTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTATTTAACCTTCTGGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGAGTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTACGGCCCCGACTGTAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCCTGTTAGGTTTAGTGGAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8585#0 GCCAACATCTGCCGAGGAAGAACAACCGCAATGCTCTACCCCTATTGCATTATCTCCTTG 60 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 GGATGAAACAAGTGACTATCAAGGTGAAGCTGTTGATTCTGCTCTATGGGGTGTCCAAGA 120 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 TGACCAAAACAATGAAATGTGGTCATTGTCTTCACCAACACCTACTCTCCAACCTTCAGG 180 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 TATTGGAGCTGATACCAAAGGTGCTTCCTGTGCTATAGAAGAGGTGATAGTAGCCCAAGG 240 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 AAATAGTGGTGTTGTTGAACCGTCACCAGCACTGGAGAAGAAAAGGATTGAAAAAGTACC 300 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 AAGTGCTTCCATAGATCGTGGAGTACCAGAGCAGGTAAAACCAAAATCAGATGCTGCATT 360 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 ATCTCCAGAAGAGAGCAGAAAACCTTCAGGTTTGCAACTATCAAGCACATATCTACAAGG 420 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 GAGCACAAAATCTTCAGGTTTGCCACCGTCAGGCACATCTCTAGATGGGGGCATAGAACC 480 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 TTCAGGTTTGCTACCTTCAGGAACTTCTTTGGAGTGGGGTACAAAAATTTCAGGTGTGCA 540 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 ATCCTCGGCCTCATCTCTAGAGGGGAGCAAAAAGGCTTTTGTTAGGCAACCATCAGGCTC 600 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 TTCACTAGAGGGAAACACAAAAGCGTCAGGTAGGCAGCCGTCAGGTTCATCTATAGAGGG 660 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 GAGTAAGAAACCTTCTGATAGGCAGCCATCAGGTGCATCTCAAGAGGGGAATACAAAGCC 720 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 TTCAGGCTGGCAACAATCTGTGTCGTCTCTTGAAGGTGGCACGAAACCTTCAGGCTGGAA 780 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 ACCTTCAATTTCTATAGACACGAATACAAAAGCTTCAGGTTGGCTGCGATCGAGCTCATC 840 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 TCCTGATGTGGGCAGAAAAGCTTCAGCATGGCAATCATCAGGTTCTTCGCCTGTTGCAGG 900 consensus_8585#1 ------------------------------------------------------------ consensus_8585#0 GAGCTCAAAAGCATCAGGTTGGCAGCCATCACCTCGCGAGAGCTCGAAATCTAAGCCTAA 960 consensus_8585#1 ---------------CGGCCGCCGGGCGGCGCCGCGCGAG---TCTCACTCCCCGTCTCG 42 ** * * * * * ** ****** ** * ** * ** consensus_8585#0 TTCCACATGGGGTGCCGGCCAAAGCCGCAACTCGTCTTCGCACCAATCAACAACACCAAC 1020 consensus_8585#1 ATCCACTCAT----CCGGCCTACGTC-----------TCGCCTCAGCCGGC----CCGCC 83 ***** ****** * * * **** ** * * ** * consensus_8585#0 AGCTAAATACTCATCAGAAACCCCAAGGAGACAAGGAAACAACAACACAAATTCTGCTGG 1080 consensus_8585#1 GAGCCCACGCACGCCGCGGCCCGCGTGCGAAGCAGCCGCCGCCGAACGCGCCTCCGCCGG 143 * * * * ** * * * ** * * * ** ** ** consensus_8585#0 CTGGGGAGACTCTCTCGGAAACA---AGAGCTGGCATTCACCCTCAGGCAATGCGAGCAG 1137 consensus_8585#1 CCGCGGCGCCCGCCGCGCAGGCACCGATCGCCCGCGCCCCCACTCGGCCCCCACCGCGCT 203 * * ** * * * ** * ** * ** ** * * *** * * * consensus_8585#0 CCGAGGCAGCCATTCTAGCCACCACCATGACCGGCACAATCAGAGCAGCGAACCATGGCG 1197 consensus_8585#1 CTAAGGCGGAC-CGCTGAGAGCCG--ATGAGAGGC-CGCCCCGCGCG----ACCGGATTA 255 * **** * * ** ** **** *** * * * ** *** consensus_8585#0 TGGTGGCTCAAATCATTCCAGGAGATCAGATCATCGTCAAGAACATGGCAACGGTGGCTC 1257 consensus_8585#1 GATTCTTTTTTGCTCTCCCAAAA----AAAAAACCCCAGGGGNCAACCCGGTGGGCTCTG 311 * * * *** * * * * * * ** * ** ** consensus_8585#0 GTCGAGATCATCGTCGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAA 1317 consensus_8585#1 TCCGAGATCATTGTTGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAA 371 ********* ** ********************************************* consensus_8585#0 TGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCACAT 1377 consensus_8585#1 TGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCGCAT 431 ******************************************************** *** consensus_8585#0 TTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTA 1437 consensus_8585#1 TTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTA 491 ************************************************************ consensus_8585#0 TTTAACCTTCTCGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGA 1497 consensus_8585#1 TTTAACCTTCTGGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGA 551 *********** ************************************************ consensus_8585#0 GTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTGCGGCCACGACTG 1557 consensus_8585#1 GTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTACGGCCCCGACTG 611 *********************************************** ***** ****** consensus_8585#0 TAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCC------------------ 1599 consensus_8585#1 TAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCCTGTTAGGTTTAGTGGAAA 671 ****************************************** consensus_8585#0 -------- consensus_8585#1 AAAAAAAA 679 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||