These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2388 fasta sequence [CGCTGACTGACGCTGCCCGCCGTGTGGCCGTGCATTGCTGTCCCTGAGCTTGCTGCTGCTGGTGGTGGTGACGATTCTGCTCGGTAGAGGAGATGCGAGTTGGGGGTGAGCTCCACAGCGGCGGCGGAGGAGGAGAGGGGGTGTTGGTGGGGAGGGGATGGAGGAAGGAGGAGGCGGAGGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGCTCGGCGAGCTCGACGAGCCGGGGATCGTCTCTCTGCGACTCGCCTTTGCCCAGCTTTGTGCGCCATCGTGGTGGACCGGGGTCAGATCTAGAGCTCGATGGGTTGCCCACTTCCTCCTCCAATGCTTCCTCAGGGTCACACGAGGAGGATCACGGGCCATTGCAAGGGGTGAAGGGAGAGGGGTGGATGCAAGTGCAGGGACCGATCAAGAACTCAGCTGCCCGTTCTACCGGAGAATGCCAAGACCAGCGGTACCGGTTGGGGTCTGTTCTTTTCCATGGTAAGAATGAACGGAAGCAGCGCCCGGCTTCAGTTGATTTTGGCTGCCCCAGTGTTGACAGATCCTCCACGCATTCTCCGGGTTTCTTGGTCAATGGTACCGGGGCGATGAACAAGGGATTGAGTGTATCATCGCAAAATAAACCAGGTGCGCCGACTAGCCCAGGAACACCAAGCTACAATCGTCAGGGTGCAACAGTTGTTGGGTATCAGCAGGGTTGGAGCTCTGAAAGAGTTGCCCTGTCTTCAAACGGCCAGAGAAGGCATTCAGGCAACAGCATGGTGTTACCACATAATACTGGGAGAACATTGCCCTCAAAATGGGAGGACGCAGAGAGGTGGATCTTCAGTCCGAATCCCAGCAATGCACTTGGAAGGACCTCAATCCCGCAGTCGCGGCGACCTAAGGCCAAAAGTGGACCTCTTGGACCTCCTGGCAGATTTAGTGAACCATACTCATCAGTTTCGTCATCGTCATATTTGCTTGACACCGGGAGAGTAGGAAACCTCACGGCAAACTCACCTTTCCTGGCTGGGGTCTTGCTGCCTGAGCATGTTTGTGTGTCCAGTAGCCATGCTGGAAGGGATCTAAGTGGTGCATCTGGTGAGGATAAAAGCAATGGCATGGGAGGCAGGTCTGGTGAAGCAAATGGTGCACATCCTGCCGTGTGGTCTACCAGAGTTTGCCAACGAATGGATAGCGCAGTTCAGTCGTCTCCGTCATTGCCTACTTCCCAAGAATCAGTTCAAGCTTGCACAGATGAACAGATCGAAATCACAACAGACTTGACCACCAGCAGTAAACCTGAAATTTCGAGAAAAGATGTGGCAACACAGACTAGCCCTGAGCTTAGCAGGTCATCTTCTCCTAGCGGGAGGCCTTCATTTTCCCGCTCACTATCAGTACAGCAAGTCAAAGAGTTGGAGAGCTGTTTCTCTAAGCTTGAGATAAGGGATGTGCAGATGGATGATCGGGTTACTCTGACCAGGTGGTCCAAGAAACATGTCACACGAGGCTCTGAGAAGAACTCGACAAACATTATAGAGTGGAAGAAAAAGACAGTGGAATCTAAATCTTCTGCCTGGGAAGTAACAGAAACTGCAAAGTGTATATCAAAGATTGAGGGAGAGGAAGCAAAGATGACTGCATGGGAGAATCTGCAAAAGGCAAAAGCAGAGGCAGCAATACAAAAGCTTGTGATGAAACTTGAAAAGAAAAGATCATACTCGCTGGAGAGGATTTTCAATACCCTCAGGTCAGGTCATAGGAAAACACATGTGATACGCAGCACAACTACCACAAATCTTGATCAGCACATCTCCAGGACTGTGAAAAGGCCATCACACCTTAGCAAGAATGGCCAAATGAGTTCGCTGAGTGGGTGCTTCACTTGCCATGCCTTCTAGTATGGTATTATACAGTCAAGCGGCACTGTCACTTTCAAGATGGAATTGGAGGGGGGAACCAAAAGGCTTGCTAGTATAGAATACAGATAAGACCTAGCAGGGGAAGCCGAGGCTCTCAATCATATCCAATGGTCTGTCATTACAAGATTTATTCTAGAATTTCCCTTTTTATTCTGCTCAGGAACAAAAGGAAGTTGACGCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCTGCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCATTCCTCTTTTATACAGCAAAATTTCATCCACTATTAGACTCTAGAGAGCAAAGATTCTTCTTGTAACTATGAGAACACGCTGTCTATTGTGCTTCAAGCCTTGTACCATGACTTTTTTTTTAATTAGCTCTGTACATGACGTATAATCACCCCACCCGGGATACTGGCA] [+] EMBL AK105281 [CGCTGACTGACGCTGCCCGCCGTGTGGCCGTGCATTGCTGTCCCTGAGCTTGCTGCTGCTGGTGGTGGTGACGATTCTGCTCGGTAGAGGAGATGCGAGTTGGGGGTGAGCTCCACAGCGGCGGCGGAGGAGGAGAGGGGGTGTTGGTGGGGAGGGGATGGAGGAAGGAGGAGGCGGAGGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGCTCGGCGAGCTCGACGAGCCGGGGATCGTCTCTCTGCGACTCGCCTTTGCCCAGCTTTGTGCGCCATCGTGGTGGACCGGGGTCAGATCTAGAGCTCGATGGGTTGCCCACTTCCTCCTCCAATGCTTCCTCAGGGTCACACGAGGAGGATCACGGGCCATTGCAAGGGGTGAAGGGAGAGGGGTGGATGCAAGTGCAGGGACCGATCAAGAACTCAGCTGCCCGTTCTACCGGAGAATGCCAAGACCAGCGGTACCGGTTGGGGTCTGTTCTTTTCCATGGTAAGAATGAACGGAAGCAGCGCCCGGCTTCAGTTGATTTTGGCTGCCCCAGTGTTGACAGATCCTCCACGCATTCTCCGGGTTTCTTGGTCAATGGTACCGGGGCGATGAACAAGGGATTGAGTGTATCATCGCAAAATAAACCAGGTGCGCCGACTAGCCCAGGAACACCAAGCTACAATCGTCAGGGTGCAACAGTTGTTGGGTATCAGCAGGGTTGGAGCTCTGAAAGAGTTGCCCTGTCTTCAAACGGCCAGAGAAGGCATTCAGGCAACAGCATGGTGTTACCACATAATACTGGGAGAACATTGCCCTCAAAATGGGAGGACGCAGAGAGGTGGATCTTCAGTCCGAATCCCAGCAATGCACTTGGAAGGACCTCAATCCCGCAGTCGCGGCGACCTAAGGCCAAAAGTGGACCTCTTGGACCTCCTGGCAGATTTAGTGAACCATACTCATCAGTTTCGTCATCGTCATATTTGCTTGACACCGGGAGAGTAGGAAACCTCACGGCAAACTCACCTTTCCTGGCTGGGGTCTTGCTGCCTGAGCATGTTTGTGTGTCCAGTAGCCATGCTGGAAGGGATCTAAGTGGTGCATCTGGTGAGGATAAAAGCAATGGCATGGGAGGCAGGTCTGGTGAAGCAAATGGTGCACATCCTGCCGTGTGGTCTACCAGAGTTTGCCAACGAATGGATAGCGCAGTTCAGTCGTCTCCGTCATTGCCTACTTCCCAAGAATCAGTTCAAGCTTGCACAGATGAACAGATCGAAATCACAACAGACTTGACCACCAGCAGTAAACCTGAAATTTCGAGAAAAGATGTGGCAACACAGACTAGCCCTGAGCTTAGCAGGTCATCTTCTCCTAGCGGGAGGCCTTCATTTTCCCGCTCACTATCAGTACAGCAAGTCAAAGAGTTGGAGAGCTGTTTCTCTAAGCTTGAGATAAGGGATGTGCAGATGGATGATCGGGTTACTCTGACCAGGTGGTCCAAGAAACATGTCACACGAGGCTCTGAGAAGAACTCGACAAACATTATAGAGTGGAAGAAAAAGACAGTGGAATCTAAATCTTCTGCCTGGGAAGTAACAGAAACTGCAAAGTGTATATCAAAGATTGAGGGAGAGGAAGCAAAGATGACTGCATGGGAGAATCTGCAAAAGGCAAAAGCAGAGGCAGCAATACAAAAGCTTGTGATGAAACTTGAAAAGAAAAGATCATACTCACTGGAGAGGATTTTCAATACCCTCAGGTCAGCTCATAGGAAAACACATGTGATACGCAGCACAACTACCACAAATCTTGATCAGCACATCTCCAGGACTGTGAAAAGGCCATCACACCTTAGCAAGAATGGCCAAATGAGTTCGCTGAGTGGGTGCTTCACTTGCCATGCCTTCTAGTATGGTATTATACAGTCAAGCGGCACTGTCACTTTCAAGATGGAATTGGAGGGGGGAACCAAAAGGCTTGCTAGTATAGAATACAGATAAGACCTAGCAGGGGAAGCCGAGGCTCTCAATGATATCCAATGGTCTGTCATTACAAGATTTATTCTAGAATTTCCCTTTTTATTCTGCTCAGGAACAAAAGGAAGTTGACGCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCTGCCTATACTCTTCAGGGCGGA ] [+] EMBL OSS12039A [ GTCATCGTCATATTTGCTTGACACCGGGAGAGTAGGAAACCTCACGGCAAACTCACCTTTCCTGGCTGGGGTCTTGCTGCCTGAGCATGTTTGTGTGTCCAGTAGCCATGCTGGAAGGGATCTAAGTGGTGCATCTGGTGAGGATAAAAGCAATGGCATGGGAGGCAGGTCTGGTGAAGCAAATGGTGCACATCCTGCCGTGTGGTCTACCAGAGTTTGCCAACGAATGGATAGCGCAGTTCAGTCGTCTCCGTCATTGCCTACTTCCCAAGAATCAGTTCAAGCTTGCACAGATGAACAGATCGAAATCACAACAGACTTGACCACCAGCAGTAAACCTGAAATTTCGAGAAAAGATGTGGCAACACAGACTAGCCCTGAGCTTAGCAGGTCATCTTCTCCTAGCGGGAGGCCTTCATTTTCCCG TCACTATCAGTACAGCAAGTCAAA ] [-] EMBL CB635696 [ AAACTGCAAAGTGTATATCAAAGATTGAGGGAGAGGAAGCAAAGATGACTGCATGGGAGAATCTGCAAAAGGCAAAAGCAGAGGCAGCAATACAAAAGCTTGTGATGAAACTTGAAAAGAAAAGATCATACTCGCTGGAGAGGATTTTCAATACCCTCAGGTCAGGTCATAGGAAAACACATGTGATACGCAGCACAACTACCACAAATCTTGATCAGCACATCTCCAGGACTGTGAAAAGGCCATCACACCTTAGCAAGAATGGCCAAATGAGTTCGCTGAGTGGGTGCTTCACTTGCCATGCCTTCTAGTATGGTATTATACAGTCAAGCGGCACTGTCACTTTCAAGATGGAATTGGAGGGGGGAACCAAAAGGCTTGCTAGTATAGAATACAGATAAGACCTAGCAGGGGAAGCCGAGGCTCTCAATCATATCCAATGGTCTGTCATTACAAGATTTATTCTAGAATTTCCCTTTTTATTCTGCTCAGGAACAAAAGGAAGTTGACGCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCTGCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCATTCCTCTTTTATACAGCAAAATTTCATCCACTATTAGACTCTAGAGAGCAAAGATTCTTCTTGTAACTATGAGAACACGCTGTCTATTGTGCTTCAAGCCTTGTACCATGACTTTTTTTTTAATTAGCTCTGTACATGACGTATAATCACCCCACCCGGGATACTGGCA] [-] EMBL CB635695 [ AGATGACTGCATGGGAGAATCTGCAAAAGGCAAAGGCAGAGGCAGCAATACAAAAGCTTGTGATGAAACTTGAAAAGAAAAGATCATACTCGCTGGAGAGGATTTTCAATACCCTCAGGTCAGGTCATAGGAAAACACATGTGATACGCAGCACAACTACCACAAATCTTGATCAGCACATCTCCAGGACTGTGAAAAGGCCATCACACCTTAGCAAGAATGGCCAAATGAGTTCGCTGAGTGGGTGCTTCACTTGCCATGCCTTCTAGTATGGTATTATACAGTCAAGCGGCACTGTCACTTTCAAGATGGAATTGGAGGGGGGAACCAAAAGGCTTGCTAGTATAGAATACAGATAAGACCTAGCAGGGGAAGCCGAGGCTCTCAATCATATCCAAGGGTCGGT ] consensusID : consensus_8588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [AGACCTAGCAGGGGAAGCCGAGGCTNTCAATGNTATCCAATGGTCTGTNATTACAAGATTTATTCTAGAATTTCCCTTNNAAAAANGNTCAGGCNCCCCNGGNAGTTGACGCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCTGCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCATTCCTCTTTTATACAGCAAAAAAAAANAAAAAANA] [+] EMBL AU088676 [AGACCTAGCAGGGGAAGCCGAGGCTNTCAATGNTATCCAATGGTCTGTNATTACAAGATTTATTCTAGAATTTCCCTTNNAAAAANGNTCAGGCNCCCCNGGNAGTTGACGCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCTGCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCATTCCTCTTTTATACAGCAAAAAAAAANAAAAAANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8588#0 CGCTGACTGACGCTGCCCGCCGTGTGGCCGTGCATTGCTGTCCCTGAGCTTGCTGCTGCT 60 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 GGTGGTGGTGACGATTCTGCTCGGTAGAGGAGATGCGAGTTGGGGGTGAGCTCCACAGCG 120 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 GCGGCGGAGGAGGAGAGGGGGTGTTGGTGGGGAGGGGATGGAGGAAGGAGGAGGCGGAGG 180 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 GAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGCTCGGCGAGCTCGACGAGCCGGGGAT 240 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 CGTCTCTCTGCGACTCGCCTTTGCCCAGCTTTGTGCGCCATCGTGGTGGACCGGGGTCAG 300 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 ATCTAGAGCTCGATGGGTTGCCCACTTCCTCCTCCAATGCTTCCTCAGGGTCACACGAGG 360 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 AGGATCACGGGCCATTGCAAGGGGTGAAGGGAGAGGGGTGGATGCAAGTGCAGGGACCGA 420 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 TCAAGAACTCAGCTGCCCGTTCTACCGGAGAATGCCAAGACCAGCGGTACCGGTTGGGGT 480 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 CTGTTCTTTTCCATGGTAAGAATGAACGGAAGCAGCGCCCGGCTTCAGTTGATTTTGGCT 540 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 GCCCCAGTGTTGACAGATCCTCCACGCATTCTCCGGGTTTCTTGGTCAATGGTACCGGGG 600 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 CGATGAACAAGGGATTGAGTGTATCATCGCAAAATAAACCAGGTGCGCCGACTAGCCCAG 660 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 GAACACCAAGCTACAATCGTCAGGGTGCAACAGTTGTTGGGTATCAGCAGGGTTGGAGCT 720 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 CTGAAAGAGTTGCCCTGTCTTCAAACGGCCAGAGAAGGCATTCAGGCAACAGCATGGTGT 780 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 TACCACATAATACTGGGAGAACATTGCCCTCAAAATGGGAGGACGCAGAGAGGTGGATCT 840 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 TCAGTCCGAATCCCAGCAATGCACTTGGAAGGACCTCAATCCCGCAGTCGCGGCGACCTA 900 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 AGGCCAAAAGTGGACCTCTTGGACCTCCTGGCAGATTTAGTGAACCATACTCATCAGTTT 960 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 CGTCATCGTCATATTTGCTTGACACCGGGAGAGTAGGAAACCTCACGGCAAACTCACCTT 1020 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 TCCTGGCTGGGGTCTTGCTGCCTGAGCATGTTTGTGTGTCCAGTAGCCATGCTGGAAGGG 1080 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 ATCTAAGTGGTGCATCTGGTGAGGATAAAAGCAATGGCATGGGAGGCAGGTCTGGTGAAG 1140 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 CAAATGGTGCACATCCTGCCGTGTGGTCTACCAGAGTTTGCCAACGAATGGATAGCGCAG 1200 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 TTCAGTCGTCTCCGTCATTGCCTACTTCCCAAGAATCAGTTCAAGCTTGCACAGATGAAC 1260 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 AGATCGAAATCACAACAGACTTGACCACCAGCAGTAAACCTGAAATTTCGAGAAAAGATG 1320 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 TGGCAACACAGACTAGCCCTGAGCTTAGCAGGTCATCTTCTCCTAGCGGGAGGCCTTCAT 1380 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 TTTCCCGCTCACTATCAGTACAGCAAGTCAAAGAGTTGGAGAGCTGTTTCTCTAAGCTTG 1440 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 AGATAAGGGATGTGCAGATGGATGATCGGGTTACTCTGACCAGGTGGTCCAAGAAACATG 1500 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 TCACACGAGGCTCTGAGAAGAACTCGACAAACATTATAGAGTGGAAGAAAAAGACAGTGG 1560 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 AATCTAAATCTTCTGCCTGGGAAGTAACAGAAACTGCAAAGTGTATATCAAAGATTGAGG 1620 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 GAGAGGAAGCAAAGATGACTGCATGGGAGAATCTGCAAAAGGCAAAAGCAGAGGCAGCAA 1680 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 TACAAAAGCTTGTGATGAAACTTGAAAAGAAAAGATCATACTCGCTGGAGAGGATTTTCA 1740 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 ATACCCTCAGGTCAGGTCATAGGAAAACACATGTGATACGCAGCACAACTACCACAAATC 1800 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 TTGATCAGCACATCTCCAGGACTGTGAAAAGGCCATCACACCTTAGCAAGAATGGCCAAA 1860 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 TGAGTTCGCTGAGTGGGTGCTTCACTTGCCATGCCTTCTAGTATGGTATTATACAGTCAA 1920 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 GCGGCACTGTCACTTTCAAGATGGAATTGGAGGGGGGAACCAAAAGGCTTGCTAGTATAG 1980 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 AATACAGATAAGACCTAGCAGGGGAAGCCGAGGCTCTCAATCATATCCAATGGTCTGTCA 2040 consensus_8588#1 ----------AGACCTAGCAGGGGAAGCCGAGGCTNTCAATGNTATCCAATGGTCTGTNA 50 ************************* ***** *************** * consensus_8588#0 TTACAAGATTTATTCTAGAATTTCCCTTTTTATTCTGCTCAGGAACAAAAGGAAGTTGAC 2100 consensus_8588#1 TTACAAGATTTATTCTAGAATTTCCCTTNNAAAAANGNTCAGGCNCCCCNGGNAGTTGAC 110 **************************** * * ***** * ** ******* consensus_8588#0 GCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCT 2160 consensus_8588#1 GCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCT 170 ************************************************************ consensus_8588#0 GCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCAT 2220 consensus_8588#1 GCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCAT 230 ************************************************************ consensus_8588#0 TCCTCTTTTATACAGCAAAATTTCATCCACTATTAGACTCTAGAGAGCAAAGATTCTTCT 2280 consensus_8588#1 TCCTCTTTTATACAGCAAAAAAAAANAAAAAANA-------------------------- 264 ******************** * * * consensus_8588#0 TGTAACTATGAGAACACGCTGTCTATTGTGCTTCAAGCCTTGTACCATGACTTTTTTTTT 2340 consensus_8588#1 ------------------------------------------------------------ consensus_8588#0 AATTAGCTCTGTACATGACGTATAATCACCCCACCCGGGATACTGGCA 2388 consensus_8588#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||