These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1400 fasta sequence [CATGCCGGCCTCCGACCCCGCCCCCGCCGCCGCCGCTGCCGCCTACGACCGCACCGCCGAGCTCCGCGCGCTCGACGCCACCCTCTCCGGCGTCCGCGGCCTCGTCGCGTCGGGCGCCACCCACCTCCCCCGCATCTTCCACAACGTCGTCCATGGTGATCAAGAACCACCGGAGGCGACGGCGCCATCGTCCGCGGCCACGACCACGACGACCGTCCCGGTGATCGACATCAGCGGGAGCCGCGCGGCCGTGGTCGACGCCGTCCGGCGGGCGGCGGCGGAGTGGGGGTTCTTCCAGGTGACGGGGCACGGGGTTCCCCTCGCCGCGATGGACGCCGCGGCGGGCGCGGCGCGCGCGTTCCACGAGTCCGGAGGCGGCGAGGGCAGCGACAAGGCGCGGCTCTACTCGCGCGAGCCCGGGAGAGCCGTCAAGTACCACTGCAACTTCGACCTGTACCAGTCGCCGGTGGCCAACTGGCGCGACACGCTCTACCTCCGCATGGCGCCCGACCCGCCGCCCGCCGCCGACTTGCCGGAGATCTGCCGGGATGCACTGTTTGAATATGCCAAACAAGTAAAGAATTTGGGGAACACACTGTTCGAGCTGCTCTCGGAGGGCCTTGGGCTCAAACCGAGCTACCTGACAGACATAGAATGCAACCAGGGGCAAATCATACTATGCCACTACTACCCTCCCTGCCCCCAGCCTGAGCTCGCCATCGGGACAAGCCGGCATTCGGACTCCGGCTTCCTCACCATACTTCTCCAGGATGACATTGGGGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTTCATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGAGCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGAAAGTCTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGATCCACCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAGTGAT-AGCTGAATAAAGATACTTACCCAAAAAA] [+] EMBL AK067970 [CATGCCGGCCTCCGACCCCGCCCCCGCCGCCGCCGCTGCCGCCTACGACCGCACCGCCGAGCTCCGCGCGCTCGACGCCACCCTCTCCGGCGTCCGCGGCCTCGTCGCGTCGGGCGCCACCCACCTCCCCCGCATCTTCCACAACGTCGTCCATGGTGATCAAGAACCACCGGAGGCGACGGCGCCATCGTCCGCGGCCACGACCACGACGACCGTCCCGGTGATCGACATCAGCGGGAGCCGCGCGGCCGTGGTCGACGCCGTCCGGCGGGCGGCGGCGGAGTGGGGGTTCTTCCAGGTGACGGGGCACGGGGTTCCCCTCGCCGCGATGGACGCCGCGGCGGGCGCGGCGCGCGCGTTCCACGAGTCCGGAGGCGGCGAGGGCAGCGACAAGGCGCGGCTCTACTCGCGCGAGCCCGGGAGAGCCGTCAAGTACCACTGCAACTTCGACCTGTACCAGTCGCCGGTGGCCAACTGGCGCGACACGCTCTACCTCCGCATGGCGCCCGACCCGCCGCCCGCCGCCGACTTGCCGGAGATCTGCCGGGATGCACTGTTTGAATATGCCAAACAAGTAAAGAATTTGGGGAACACACTGTTCGAGCTGCTCTCGGAGGGCCTTGGGCTCAAACCGAGCTACCTGACAGACATAGAATGCAACCAGGGGCAAATCATACTATGCCACTACTACCCTCCCTGCCCCCAGCCTGAGCTCGCCATCGGGACAAGCCGGCATTCGGACTCCGGCTTCCTCACCATACTTCTCCAGGATGACATTGGGGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTTCATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGAGCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGAAAGTCTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGATCCACCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAG ] [+] EMBL CF307573 [ CTCCAGGATGACATTGGGGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTTCATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGAGCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGAAAGTCTATGATGTACCGGTGTGAATTGTATCATGCACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGAT ] [-] EMBL CB653384 [ TTACAAGAGTGTGGAGCATAGAGTGTTGGCGAAGAACACTGACCCGAGAGTCTGGATTCCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCCCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTTTGAATTCCGGTTATAGATTGGTAAAGAAAGTTTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGCCAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGGGGGGGATCCCCCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATCCCATTGAATAAAGTGAT AGCTGAATAAAG ] [-] EMBL CF307574 [ ATTACACAAGGAGCTGTGGATCCACCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAGAGATCTCCTGAATAAAGATACTTACCCAAAAAA] consensusID : consensus_8593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 92 fasta sequence [TGCTATGTATTGTTATGCCATTGAATAAAGAGATCTCCTGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF316163 [TGCTATGTATTGTTATGCCATTGAATAAAGAGATCTCCTGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8593#0 CATGCCGGCCTCCGACCCCGCCCCCGCCGCCGCCGCTGCCGCCTACGACCGCACCGCCGA 60 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 GCTCCGCGCGCTCGACGCCACCCTCTCCGGCGTCCGCGGCCTCGTCGCGTCGGGCGCCAC 120 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 CCACCTCCCCCGCATCTTCCACAACGTCGTCCATGGTGATCAAGAACCACCGGAGGCGAC 180 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 GGCGCCATCGTCCGCGGCCACGACCACGACGACCGTCCCGGTGATCGACATCAGCGGGAG 240 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 CCGCGCGGCCGTGGTCGACGCCGTCCGGCGGGCGGCGGCGGAGTGGGGGTTCTTCCAGGT 300 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 GACGGGGCACGGGGTTCCCCTCGCCGCGATGGACGCCGCGGCGGGCGCGGCGCGCGCGTT 360 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 CCACGAGTCCGGAGGCGGCGAGGGCAGCGACAAGGCGCGGCTCTACTCGCGCGAGCCCGG 420 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 GAGAGCCGTCAAGTACCACTGCAACTTCGACCTGTACCAGTCGCCGGTGGCCAACTGGCG 480 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 CGACACGCTCTACCTCCGCATGGCGCCCGACCCGCCGCCCGCCGCCGACTTGCCGGAGAT 540 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 CTGCCGGGATGCACTGTTTGAATATGCCAAACAAGTAAAGAATTTGGGGAACACACTGTT 600 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 CGAGCTGCTCTCGGAGGGCCTTGGGCTCAAACCGAGCTACCTGACAGACATAGAATGCAA 660 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 CCAGGGGCAAATCATACTATGCCACTACTACCCTCCCTGCCCCCAGCCTGAGCTCGCCAT 720 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 CGGGACAAGCCGGCATTCGGACTCCGGCTTCCTCACCATACTTCTCCAGGATGACATTGG 780 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 GGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTT 840 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 CATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGA 900 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 GCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCAC 960 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 CCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGA 1020 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 GAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGT 1080 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 TGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGA 1140 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 AAGTCTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGAT 1200 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 AGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACA 1260 consensus_8593#1 -----TGCTATGTATTGTTATGCCATTGAATAAAGAGATCT--CCTGAATAAAAAAAAAA 53 * ***** ** *** ** * * * * ** ** * * * consensus_8593#0 ACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGATCCACCCTTGTTTG 1320 consensus_8593#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 92 * * ** ** * * *** ** * * ** * consensus_8593#0 TAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAGTGATAGCTGAAT 1380 consensus_8593#1 ------------------------------------------------------------ consensus_8593#0 AAAGATACTTACCCAAAAAA 1400 consensus_8593#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||