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Oryza sativa
cluster # 8593 cluster # 8593       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8593#0 length = 1400 sequences # 4  
consensus_8593#1 length = 92 sequences # 1  

consensusID : consensus_8593#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1400
fasta sequence
                              [CATGCCGGCCTCCGACCCCGCCCCCGCCGCCGCCGCTGCCGCCTACGACCGCACCGCCGAGCTCCGCGCGCTCGACGCCACCCTCTCCGGCGTCCGCGGCCTCGTCGCGTCGGGCGCCACCCACCTCCCCCGCATCTTCCACAACGTCGTCCATGGTGATCAAGAACCACCGGAGGCGACGGCGCCATCGTCCGCGGCCACGACCACGACGACCGTCCCGGTGATCGACATCAGCGGGAGCCGCGCGGCCGTGGTCGACGCCGTCCGGCGGGCGGCGGCGGAGTGGGGGTTCTTCCAGGTGACGGGGCACGGGGTTCCCCTCGCCGCGATGGACGCCGCGGCGGGCGCGGCGCGCGCGTTCCACGAGTCCGGAGGCGGCGAGGGCAGCGACAAGGCGCGGCTCTACTCGCGCGAGCCCGGGAGAGCCGTCAAGTACCACTGCAACTTCGACCTGTACCAGTCGCCGGTGGCCAACTGGCGCGACACGCTCTACCTCCGCATGGCGCCCGACCCGCCGCCCGCCGCCGACTTGCCGGAGATCTGCCGGGATGCACTGTTTGAATATGCCAAACAAGTAAAGAATTTGGGGAACACACTGTTCGAGCTGCTCTCGGAGGGCCTTGGGCTCAAACCGAGCTACCTGACAGACATAGAATGCAACCAGGGGCAAATCATACTATGCCACTACTACCCTCCCTGCCCCCAGCCTGAGCTCGCCATCGGGACAAGCCGGCATTCGGACTCCGGCTTCCTCACCATACTTCTCCAGGATGACATTGGGGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTTCATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGAGCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGAAAGTCTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGATCCACCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAGTGAT-AGCTGAATAAAGATACTTACCCAAAAAA]

[+] EMBL AK067970             [CATGCCGGCCTCCGACCCCGCCCCCGCCGCCGCCGCTGCCGCCTACGACCGCACCGCCGAGCTCCGCGCGCTCGACGCCACCCTCTCCGGCGTCCGCGGCCTCGTCGCGTCGGGCGCCACCCACCTCCCCCGCATCTTCCACAACGTCGTCCATGGTGATCAAGAACCACCGGAGGCGACGGCGCCATCGTCCGCGGCCACGACCACGACGACCGTCCCGGTGATCGACATCAGCGGGAGCCGCGCGGCCGTGGTCGACGCCGTCCGGCGGGCGGCGGCGGAGTGGGGGTTCTTCCAGGTGACGGGGCACGGGGTTCCCCTCGCCGCGATGGACGCCGCGGCGGGCGCGGCGCGCGCGTTCCACGAGTCCGGAGGCGGCGAGGGCAGCGACAAGGCGCGGCTCTACTCGCGCGAGCCCGGGAGAGCCGTCAAGTACCACTGCAACTTCGACCTGTACCAGTCGCCGGTGGCCAACTGGCGCGACACGCTCTACCTCCGCATGGCGCCCGACCCGCCGCCCGCCGCCGACTTGCCGGAGATCTGCCGGGATGCACTGTTTGAATATGCCAAACAAGTAAAGAATTTGGGGAACACACTGTTCGAGCTGCTCTCGGAGGGCCTTGGGCTCAAACCGAGCTACCTGACAGACATAGAATGCAACCAGGGGCAAATCATACTATGCCACTACTACCCTCCCTGCCCCCAGCCTGAGCTCGCCATCGGGACAAGCCGGCATTCGGACTCCGGCTTCCTCACCATACTTCTCCAGGATGACATTGGGGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTTCATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGAGCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGAAAGTCTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGATCCACCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAG                                 ]
[+] EMBL CF307573             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTCCAGGATGACATTGGGGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTTCATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGAGCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGAAAGTCTATGATGTACCGGTGTGAATTGTATCATGCACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGAT                                                                                              ]
[-] EMBL CB653384             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTACAAGAGTGTGGAGCATAGAGTGTTGGCGAAGAACACTGACCCGAGAGTCTGGATTCCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCCCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTTTGAATTCCGGTTATAGATTGGTAAAGAAAGTTTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGCCAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGGGGGGGATCCCCCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATCCCATTGAATAAAGTGAT AGCTGAATAAAG                ]
[-] EMBL CF307574             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATTACACAAGGAGCTGTGGATCCACCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAGAGATCTCCTGAATAAAGATACTTACCCAAAAAA]


>consensus_8593#0 CATGCCGGCCTCCGACCCCGCCCCCGCCGCCGCCGCTGCCGCCTACGACCGCACCGCCGA GCTCCGCGCGCTCGACGCCACCCTCTCCGGCGTCCGCGGCCTCGTCGCGTCGGGCGCCAC CCACCTCCCCCGCATCTTCCACAACGTCGTCCATGGTGATCAAGAACCACCGGAGGCGAC GGCGCCATCGTCCGCGGCCACGACCACGACGACCGTCCCGGTGATCGACATCAGCGGGAG CCGCGCGGCCGTGGTCGACGCCGTCCGGCGGGCGGCGGCGGAGTGGGGGTTCTTCCAGGT GACGGGGCACGGGGTTCCCCTCGCCGCGATGGACGCCGCGGCGGGCGCGGCGCGCGCGTT CCACGAGTCCGGAGGCGGCGAGGGCAGCGACAAGGCGCGGCTCTACTCGCGCGAGCCCGG GAGAGCCGTCAAGTACCACTGCAACTTCGACCTGTACCAGTCGCCGGTGGCCAACTGGCG CGACACGCTCTACCTCCGCATGGCGCCCGACCCGCCGCCCGCCGCCGACTTGCCGGAGAT CTGCCGGGATGCACTGTTTGAATATGCCAAACAAGTAAAGAATTTGGGGAACACACTGTT CGAGCTGCTCTCGGAGGGCCTTGGGCTCAAACCGAGCTACCTGACAGACATAGAATGCAA CCAGGGGCAAATCATACTATGCCACTACTACCCTCCCTGCCCCCAGCCTGAGCTCGCCAT CGGGACAAGCCGGCATTCGGACTCCGGCTTCCTCACCATACTTCTCCAGGATGACATTGG GGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTT CATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGA GCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCAC CCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGA GAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGT TGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGA AAGTCTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGAT AGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACA ACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGATCCACCCTTGTTTG TAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAGTGATAGCTGAAT AAAGATACTTACCCAAAAAA



consensusID : consensus_8593#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 92
fasta sequence
                              [TGCTATGTATTGTTATGCCATTGAATAAAGAGATCTCCTGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF316163             [TGCTATGTATTGTTATGCCATTGAATAAAGAGATCTCCTGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8593#1 TGCTATGTATTGTTATGCCATTGAATAAAGAGATCTCCTGAATAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8593#0      CATGCCGGCCTCCGACCCCGCCCCCGCCGCCGCCGCTGCCGCCTACGACCGCACCGCCGA 60
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      GCTCCGCGCGCTCGACGCCACCCTCTCCGGCGTCCGCGGCCTCGTCGCGTCGGGCGCCAC 120
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      CCACCTCCCCCGCATCTTCCACAACGTCGTCCATGGTGATCAAGAACCACCGGAGGCGAC 180
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      GGCGCCATCGTCCGCGGCCACGACCACGACGACCGTCCCGGTGATCGACATCAGCGGGAG 240
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      CCGCGCGGCCGTGGTCGACGCCGTCCGGCGGGCGGCGGCGGAGTGGGGGTTCTTCCAGGT 300
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      GACGGGGCACGGGGTTCCCCTCGCCGCGATGGACGCCGCGGCGGGCGCGGCGCGCGCGTT 360
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      CCACGAGTCCGGAGGCGGCGAGGGCAGCGACAAGGCGCGGCTCTACTCGCGCGAGCCCGG 420
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      GAGAGCCGTCAAGTACCACTGCAACTTCGACCTGTACCAGTCGCCGGTGGCCAACTGGCG 480
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      CGACACGCTCTACCTCCGCATGGCGCCCGACCCGCCGCCCGCCGCCGACTTGCCGGAGAT 540
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      CTGCCGGGATGCACTGTTTGAATATGCCAAACAAGTAAAGAATTTGGGGAACACACTGTT 600
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      CGAGCTGCTCTCGGAGGGCCTTGGGCTCAAACCGAGCTACCTGACAGACATAGAATGCAA 660
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      CCAGGGGCAAATCATACTATGCCACTACTACCCTCCCTGCCCCCAGCCTGAGCTCGCCAT 720
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      CGGGACAAGCCGGCATTCGGACTCCGGCTTCCTCACCATACTTCTCCAGGATGACATTGG 780
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      GGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTT 840
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      CATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGA 900
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      GCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCAC 960
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      CCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGA 1020
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      GAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGT 1080
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      TGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGA 1140
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      AAGTCTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGAT 1200
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      AGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACA 1260
consensus_8593#1      -----TGCTATGTATTGTTATGCCATTGAATAAAGAGATCT--CCTGAATAAAAAAAAAA 53
                              * *****   **  ***  **    *   *  *  * ** **     * * *

consensus_8593#0      ACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGATCCACCCTTGTTTG 1320
consensus_8593#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 92
                      * * **   **  * *     *** **  * * **  *                      

consensus_8593#0      TAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAGTGATAGCTGAAT 1380
consensus_8593#1      ------------------------------------------------------------
                                                                                  

consensus_8593#0      AAAGATACTTACCCAAAAAA 1400
consensus_8593#1      --------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)