These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8596#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1473 fasta sequence [TTTTTTTTTTTCGACTCATTTGGTTGATAGGGCCAACATATAACTGATGACAAATGGACAAATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATCTCTCACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACAACTCCACGGCATTTTGGGAATCCACAATAACAAGGAAGTCGCTGATCACTCGAAACAAACCTATAATCATAAGTCAACTCTTCCCATGGATTTATATCCCGCTTTGCAAAAATGATGATATGCTCATCCCCGAGAACACTTATNACGCGTGAATAACAATTCGGCTCACAAGAATGATTAATTAAATGGGCAATGCTTCCTGCCCGCGTAGCATCTATTACACGCTCATCATCTATCCTGAACATGTACGTCCCAGCACCCACTAAAGAGTTGTATATGCGCCGCTCTCTAATGTCTGATATTGGTGGCCTGACGAGCTCTCCGATGTACTCAATCATCATGTCGCCTGCCTTGTGCGAAACCTTTGCAAAGACACCAAATCCATGAATTCTTGACTTTCCAAAAGCTAGTCTCCTCCTGAATGTAGCCTTCATGCTTTTATACTTTTCAATCATAGAAGACACGTTGCCAACAGCTTCTTGATGTGCAACATCCAAAAAGCCAACTGATTGAATTGGTTCACTGATAGCATCATGGCCTACTCTATTTTGGCAGAAACCACTAACAATATAAGGCATATTCTCTACATATAAACGTTTTACAGAAGCGGTAGCCATAACTTGAGGTTGCTTTTGGCCCCTTCTCCCATGGATATTATAAGGTTCAGTCCTTGCACAACCGGATGGTGGAACTGCATCTGTCTGAACTACCACAGCAGGCTTAGCAAGGTTACTTTCAAGAGATGGACGTTCAGTCGATGGTTGTCTGTGCTTCTTGCAGTATGAAAGTAGACGAATACATGGGTCCTCATCCTCATCAAGTAACATGAGGTGGATTTTGTCATCATCTTCAAGCTCAACACAAAGATCAGCAGCACGTGCACAAAGAGGGTGATATGCAACACGACAGGTAGGATGAGAACACTGTATGCAAGCTCCATAAGCAACTCCGCAAATGCTGCATAGAAGTTTCCAGCGGTCCTTGTTGATTCTGCTCAATCCATCAATCGGTTCCATTCTCTTCACATCTTTTAAGCAAGTTTCAGGAATCCATATAGCACATGCAAGATGAGC] [+] EMBL CA758986 [TTTTTTTTTTTCGACTCATTTGGTTGATAGGGCCAACATATAACTGATGACAAATGGACAAATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATCTCTCACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACAACTCCACGGCATTTTGGGAATCCACAATAACAAGGAAGTCGCTGATCACTCGAAACAAACCTATAATCATAAGTCAACTCTTCCCATGGATTTATATCCCGCTTTGCAAAAATGATGATATGCTCATCCCCGAGAACACTTATNACGCGTGAATAACAATTCGGCTCACAAGAATGATTAATTAAATGGGCAATGCTTCCTGCCCGCGTAGCATCTATTACACGCTCATCATCTATCCTGAACATGTACGTCCCAGCACCCACTAAAGAGTTGTATATGCGCCGCTCTCTA ] [+] EMBL CB643793 [ cttttttttTGCCAGACCTATGTCAAAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATTTCTCACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGGTGAAATAATTCACTTCTATTGACCCTTATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACAACTCCACGGCATTTTGGGAATCCACAATAACAAGGAAGTCGCTGATCACTCGAAACAAACCTATAATCATAAGTCAACTCTTCCCATGGATTTATATCCCGCTTTGCAAAAATGATGATATGCTCATCCCCGAGAACACTTATGACGCGTGAATAACAATTCGGCTCACAAGAATGATTAATTAAATGGGCAATGCTTCCTGCCCGCGTAGCATCTATAACACGCTCATCATCTATCCTGAACATGTACGTCCCAGCACCCACTAAAGAGTTGTATATGCGCCGCTCTCTAATGTCTGATATTGGTGGCCTGACGAGCTCTCCGATGTACTCAATCATCATGTCGCCTGCCTTGTGCGAAACCTTTGCAAAGACACCAAATCCATGAATTCTTGACTTTCCAAAAGCTAGTCTCCTCCTGAATGTAGCCTTCATGCTTTTATACTTTTCAATCATAGAAGACACGTTGCCAACAGCTTCTTGATGTGCAACATCCAAAAAGCCAACTGATTGAATTGGTTCACTGATAGCATCATGGCC ] [-] EMBL CB643792 [ ATGCGCCGCTCTCTAATGTCTGATATTGGTGGCCTGACGAGCTCTCCGATGTACTCAATCATCATGTCGCCTGCCTTGTGCGAAACCTTTGCAAAGACACCAAATCCATGAATTCTTGACTTTCCAAAAGCTAGTCTCCTCCTGAATGTAGCCTTCATGCTTTTATACTTTTCAATCATAGAAGACACGTTGCCAACAGCTTCTTGATGTGCAACATCCAAAAAGCCAACTGATTGAATTGGTTCACTGATAGCATCATGGCCTACTCTATTTTGGCAGAAACCACTAACAATATAAGGCATATTCTCTACATATAAACGTTTTACAGAAGCGGTAGCCATAACTTGAGGTTGCTTTTGGCCCCTTCTCCCATGGATATTATAAGGTTCAGTCCTTGCACAACCGGATGGTGGAACTGCATCTGTCTGAACTACCACAGCAGGCTTAGCAAGGTTACTTTCAAGAGATGGACGTTCAGTCGATGGTTGTCTGTGCTTCTTGCAGTATGAAAGTAGACGAATACATGGGTCCTCATCCTCATCAAGTAACATGAGGTGGATTTTGTCATCATCTTCAAGCTCAACACAAAGATCAGCAGCACGTGCACAAAGAGGGTGATATGCAACACGACAGGTAGGATGAGAACACTGTATGCAAGCTCCATAAGCAACTCCGCAAATGCTGCATAGAAGTTTCCAGCGGTCCTTGTTGATTCTGCTCAATCCATCAATCGGTTCCATTCTCTTCACATCTTTTAAGCAAGTTTCAGGAATCCATATAGCACATGCAAGATGAGC] consensusID : consensus_8596#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [TATAACTGATGACAAATGGACAAATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATNTCTNACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACCTCGTGCCGAATTCGGCACGGCTCGTGCC] [-] EMBL AA751989 [TATAACTGATGACAAATGGACAAATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATNTCTNACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACCTCGTGCCGAATTCGGCACGGCTCGTGCC] consensusID : consensus_8596#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATTTCTCACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATT] [-] EMBL AU162341 [TTTTTTTTTTTTTTTTTTTTTTTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATTTCTCACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8596#0 TTTTTTTTTTTCGACTCATTTGGTTGATAGGGCCAACATATAACTGATGACAAATGGACA 60 consensus_8596#2 -----------------------------------------TTTTTTTTTTTTTTTTTTT 19 consensus_8596#1 --------------------------------------TATAACTGATGACAAATGGACA 22 * * * consensus_8596#0 AATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATG 120 consensus_8596#2 TTTTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATG 79 consensus_8596#1 AATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATG 82 ********************************************************** consensus_8596#0 GTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCA 180 consensus_8596#2 GTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCA 139 consensus_8596#1 GTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCA 142 ************************************************************ consensus_8596#0 TTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATCTCTCACATGAAAAACTGAGGCAAA 240 consensus_8596#2 TTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATTTCTCACATGAAAAACTGAGGCAAA 199 consensus_8596#1 TTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATNTCTNACATGAAAAACTGAGGCAAA 202 *********************************** *** ******************** consensus_8596#0 TTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGC 300 consensus_8596#2 TTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGC 259 consensus_8596#1 TTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGC 262 ************************************************************ consensus_8596#0 AATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCT 360 consensus_8596#2 AATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCT 319 consensus_8596#1 AATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCT 322 ************************************************************ consensus_8596#0 TATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACAACTCCACGGCATTTTGGGAA 420 consensus_8596#2 TATT-------------------------------------------------------- 323 consensus_8596#1 TATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACCTCGTGCCGAATTCGGCACGG 382 **** consensus_8596#0 TCCACAATAACAAGGAAGTCGCTGATCACTCGAAACAAACCTATAATCATAAGTCAACTC 480 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 CTCGTGCC---------------------------------------------------- 390 consensus_8596#0 TTCCCATGGATTTATATCCCGCTTTGCAAAAATGATGATATGCTCATCCCCGAGAACACT 540 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 TATNACGCGTGAATAACAATTCGGCTCACAAGAATGATTAATTAAATGGGCAATGCTTCC 600 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 TGCCCGCGTAGCATCTATTACACGCTCATCATCTATCCTGAACATGTACGTCCCAGCACC 660 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 CACTAAAGAGTTGTATATGCGCCGCTCTCTAATGTCTGATATTGGTGGCCTGACGAGCTC 720 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 TCCGATGTACTCAATCATCATGTCGCCTGCCTTGTGCGAAACCTTTGCAAAGACACCAAA 780 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 TCCATGAATTCTTGACTTTCCAAAAGCTAGTCTCCTCCTGAATGTAGCCTTCATGCTTTT 840 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 ATACTTTTCAATCATAGAAGACACGTTGCCAACAGCTTCTTGATGTGCAACATCCAAAAA 900 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 GCCAACTGATTGAATTGGTTCACTGATAGCATCATGGCCTACTCTATTTTGGCAGAAACC 960 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 ACTAACAATATAAGGCATATTCTCTACATATAAACGTTTTACAGAAGCGGTAGCCATAAC 1020 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 TTGAGGTTGCTTTTGGCCCCTTCTCCCATGGATATTATAAGGTTCAGTCCTTGCACAACC 1080 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 GGATGGTGGAACTGCATCTGTCTGAACTACCACAGCAGGCTTAGCAAGGTTACTTTCAAG 1140 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 AGATGGACGTTCAGTCGATGGTTGTCTGTGCTTCTTGCAGTATGAAAGTAGACGAATACA 1200 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 TGGGTCCTCATCCTCATCAAGTAACATGAGGTGGATTTTGTCATCATCTTCAAGCTCAAC 1260 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 ACAAAGATCAGCAGCACGTGCACAAAGAGGGTGATATGCAACACGACAGGTAGGATGAGA 1320 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 ACACTGTATGCAAGCTCCATAAGCAACTCCGCAAATGCTGCATAGAAGTTTCCAGCGGTC 1380 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 CTTGTTGATTCTGCTCAATCCATCAATCGGTTCCATTCTCTTCACATCTTTTAAGCAAGT 1440 consensus_8596#2 ------------------------------------------------------------ consensus_8596#1 ------------------------------------------------------------ consensus_8596#0 TTCAGGAATCCATATAGCACATGCAAGATGAGC 1473 consensus_8596#2 --------------------------------- consensus_8596#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||