|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 673 fasta sequence
[ATCGATCTCGGTCGTGTATAGCAGTAGCACTGCATATGGCAATAAGCAGATTAATGGTGACGAAGAAGCAGCAGGNGGCCTTGTTGGCCGTGGTCGCCGTGGCAGCTCTGGCGCAGGTCGCGGCGGCGGCGGTGCATCCGGTGGGAGGCAATGGCGCCTGGGACACCACCGGCAACTACAATGCCTGGTCCGTCTCCCAAAAGTTCTCCCAAGGCGACTCCATCCTGTTCACCTATCCCTCCTCGCACGACGTGGTGGAGGTCCCCAAGGCCAGCTACGACGCCTGCTCACCCGCCAACGCCCTCGCCTCCTACACCGGCGGCAGCACCACCGTCAAGCTCGACGCCCCGGGCAAGCACTACTTCATCTGCGGCGTGCCCGGCCACTGCGCCGCCGGCATGAAGCTCGAGGTCACCGTCGCCGCCGCCACCG-CCACCAAGCCCAGGCACAAGAAGGGCGCCGCCCCCGCCGCCGCCCCGGCGATGCCTCCCGCCGTCTCATCACCCACCGAGGAGATGCCCGCTGTCACCTCTCCCACCGGATCTCCGGCGCCGTCGTCCCCCTTTGCTGCGTCAACCATCCCCATTCACGTTACCGCCACACTCCCCCCTTGGGATGGCATTGGCCCTTCCTCATCCCTGTTAAAACTGGAAACTTATTAGTCCCCCCCTTT]
[+] EMBL OSR22541A [ATCGATCTCGGTCGTGTATAGCAGTAGCACTGCATATGGCAATAAGCAGATTAATGGTGACGAAGAAGCAGCAGGNGGCCTTGTTGGCCGTGGTCGCCGTGGCAGCTCTGGCGCAGGTCGCGGCGGCGGCGGTGCATCCGGTGGGAGGCAATGGCGCCTGGGACACCACCGGCAACTACAATGCCTGGTCCGTCTCCCAAAAGTTCTCCCAAGGCGACTCCATCCTGTTCACCTATCCCTCCTCGCACGACGTGGTGGAGGTCCCCAAGGCCAGCTACGACGNCTGCTCACCCGCCAAC ]
[+] EMBL CA753457 [ CGTCTCCCAAAAGTTCTCCCAAGGCGACTCCATCCTGTTCACCTATCCCTCCTCGCACGACGTGGTGGAGGTCCCCAAGGCCAGCTACGACGCCTGCTCACCCGCCAACGCCCTCGCCTCCTACACCGGCGGCAGCACCACCGTCAAGCTCGACGCCCCGGGCAAGCACTACTTCATCTGCGGCGTGCCCGGCCACTGCGCCGCCGGCATGAAGCTCGAGGTCACCGTCGCCGCCGCCACCG CCACCAAGCCCAGGCACAAGAAGGGCGCCGCCCCCGCCGCCGCCCCGGCGATGCCTCCCGCCGTCTCATCACCCACCGAGGAGATGCCCGCTGTCACCTCTCCCACCGGATCTCCGGCGCCGTCGTCCCCCTTTGCTGCGTCAACCATCCCCATTCACGTTACCGCCACACTCCCCCCTTGGGATGGCATTGGCCCTTCCTCATCCCTGTTAAAACTGGAAACTTATTAGTCCCCCCCTTT]
[+] EMBL OSR06332A [ CAAAAGTTCTCCCAAGGCGACTCCATCCTGTTCACCTATCCCTCCTCGCACGACGTGGTGGAGGTCCCCAAGGCCAGCTACGACGCCTGCTCACCCGCCAACGCCCTCGCCTCCTACACCGGCGGCAGCACCACCGTCAAGCTCGACGCCCCGGGCAAGCACTACTTCATCTGCGGCGTGCCCGGCCACTGCGCCGCCGGCATGAAGCTCGAGGTCACCGTCGCCGCCGNCACCGACCACCAAGCCCAGGCACAAGAAG ]
consensusID : consensus_8610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 464 fasta sequence
[GTCGCCGCCGCCACCGCCACCAAGCCCAGGCACAAGAAGGGCGCCGCCCCCGCCGCCGCCCCGGCGATGCCTCCCGCCGTCTCATCACCCACCGAGGAGATGCCCGCTGTCACCTCTCCCACCGGATCTCCGGCGCCGTCGTCCGCGTCTGCTGCGTCAACCATCGCCATCAACGTCGCCGCCACGCTCGCCGCAGGGATGGCATTGGCCTTCCTCGCCATGTGAGACTGAGACTATAGGCTCCATTTAATTATTTTTTGGGCTCTGCTTAATTAATCCCTTCCCTTAATCATGTATGCATGCCACTGCTAGCTAAGCTGTTGAGAAATTTGCAGGCTTTTCGCTTCTTCTTTTCCTTTTCCTTTTGATTAAATTATTAGTTTACGTACATTTATTTGTTGTACACTTGTACTCTCTCGACGGAATAAATCGAGCTATATATTGTCATTCTTTCAGCAAAAAAA]
[+] EMBL AU101625 [GTCGCCGCCGCCACCGCCACCAAGCCCAGGCACAAGAAGGGCGCCGCCCCCGCCGCCGCCCCGGCGATGCCTCCCGCCGTCTCATCACCCACCGAGGAGATGCCCGCTGTCACCTCTCCCACCGGATCTCCGGCGCCGTCGTCCGCGTCTGCTGCGTCAACCATCGCCATCAACGTCGCCGCCACGCTCGCCGCAGGGATGGCATTGGCCTTCCTCGCCATGTGAGACTGAGACTATAGGCTCCATTTAATTATTTTTTGGGCTCTGCTTAATTAATCCCTTCCCTTAATCATGTATGCATGCCACTGCTAGCTAAGCTGTTGAGAAATTTGCAGGCTTTTCGCTTCTTCTTTTCCTTTTCCTTTTGATTAAATTATTAGTTTACGTACATTTATTTGTTGTACACTTGTACTCTCTCGACGGAATAAATCGAGCTATATATTGTCATTCTTTCAGCAAAAAAA]
[+] EMBL AU162427 [ GGATGGCATTGGCCTTCCTCGCCATGTGAGACTGAGACTATAGGCTCCATTTAATTATTTTTTGGGCTCTGCTTAATTAATCCCTTCCCTTAATCATGTATGCATGCCACTGCTAGCTAAGCTGTTGAGAAATTTGCAGGCTTTTCGCTTCTTCTTTTCCTTTTCCTTTTGATTAAATTATTAGTTTACGTACATTTATTTGTTGTACACTTGTACTCTCTCGACGGAATAAATCGAGCTATATATTGTCATTCTTTCAGCAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8610#0 ATCGATCTCGGTCGTGTATAGCAGTAGCACTGCATATGGCAATAAGCAGATTAATGGTGA 60
consensus_8610#1 ------------------------------------------------------------
consensus_8610#0 CGAAGAAGCAGCAGGNGGCCTTGTTGGCCGTGGTCGCCGTGGCAGCTCTGGCGCAGGTCG 120
consensus_8610#1 ------------------------------------------------------------
consensus_8610#0 CGGCGGCGGCGGTGCATCCGGTGGGAGGCAATGGCGCCTGGGACACCACCGGCAACTACA 180
consensus_8610#1 --------------------------------------------GTCGCCGCCGCCACCG 16
* *** * * *
consensus_8610#0 ATGCCTGGTCCGTCTCCCAAAAGTTCTCCCAAGGCGACTCCATCCTGTTCACCTATCCCT 240
consensus_8610#1 CCACCAAGCCCAGGCACAAGAAGGGCGCCGCCCCCGCCGCCGCCCCGGCGATGCCTCCCG 76
** * ** * * *** * ** ** * ** ** * * ****
consensus_8610#0 CC-TCGCACGACGTG--GTGGAGGTCCCCAAGGCCAGCTACGACGCCTGCTCACC--CGC 295
consensus_8610#1 CCGTCTCATCACCCACCGAGGAGATGCCCGCTGTCACCTCTCCCACCGGATCTCCGGCGC 136
** ** ** ** * **** * *** * ** ** * ** * ** ** ***
consensus_8610#0 CAACGCCCTCGCCTCCTACACCGGCGGCAGCACCACCGTCAAGCTCGACGCCCCGGGCAA 355
consensus_8610#1 CGTCGTCCGCGTCTGCTGCGTCAAC-----CATCGCCATCAACGTCGCCGCCACGCTCG- 190
* ** ** ** ** ** * * * ** * ** **** *** **** ** *
consensus_8610#0 GCACTACTTCATCTGCGGCGTGCCCGGCCACTGCGCCGCCGGCATGAAGCTCGAGGTCAC 415
consensus_8610#1 ------CCGCAGGGATGGCAT---TGGCC--TTCCTCGCCA-TGTGAGACT-GAGACTAT 237
* ** *** * **** * * **** *** ** *** *
consensus_8610#0 CGTCGCCGCCGCCACCGCCACCAAGCCCAGGCACAAGAAGGGCGCCGCCCCCGCCGCCGC 475
consensus_8610#1 AGGCTCCATT-TAATTATTTTTTGGGCTCTGCTTAATTAA-------TCCCTTCCCTTAA 289
* * ** * * * ** ** * *** **
consensus_8610#0 CCCGGCGATGCCTCCCGCCGTCTCATCACCCACCGAGGAGATGCCCG--CTGTCACCTCT 533
consensus_8610#1 TCATGT-ATGCATGCCACTGCTAGCTAAGCTGTTGAGAAATTTGCAGGCTTTTCGCTTCT 348
* * **** * ** * * * * * *** * * * * * ** * ***
consensus_8610#0 CCCACCGGATCTCCGGCGCCGTCGTCCCCCTTTGCTGCGTCAACCATCCCCATTCACGTT 593
consensus_8610#1 TCT------TTTCCTTTTCCTTTTGATTAAATTATTAGTTTACGTACATTTATTTGTTGT 402
* * *** ** * ** * * * * *** *
consensus_8610#0 ACCGCCACACTCCCCCCTTGGGATGGCATTGGCCCTTCCTCATCCCTGTTAAAACTGGAA 653
consensus_8610#1 ACACTTGTACTCTCTCGACGGAATAAATCGAGCTATATATTGTCATTCTTTCAGCAAAAA 462
** **** * * ** ** ** * * ** * ** * * **
consensus_8610#0 ACTTATTAGTCCCCCCCTTT 673
consensus_8610#1 AA------------------ 464
*
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||