These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1237 fasta sequence [TTCAGACAATTAACATCACTAGGAGAGAAATCAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCC-GA-TCGACATCAACACCAAGACCGTCGTCCCGCGCTCGGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGTTCCAGGCGATCCACTGGCACGCGCCGTCGGAGCACACCATCAACGGCAGGCGCTTCCCGCTCGAGCTCCACCTCGTCCACAAGTCCGACGCCGACGGCGGCCTCGCCGTCATCTCCGTCCTCTACAAGCTCGGCGCCCCGGACTCCTTCTACCTCCAGTTCAAGGACCACCTCGCCGAGCTCGGCGCCGACGAGTGCGACTTCAGCAAGGAGGAGGCCCACGTCGCCGCCGGGCTGGTGCAGATGAGGTCGCTGCAGAAGCGCACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGACGCCGCCGTGCGGCGAGAACGTGGTGTGGAGCGTGCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAGCTGCACCTGCTCATGTCGCCATTGCCGACTAAGGACGCCAGGCCGGCGCAGCCGCTCAATGGCAGGGCCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCCAAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTGGTTTTTTGTATTTGATGTTGAGTTGATTTGATTAACATTTCGACGTATGATATGCACTATATATAATTAATTAACATCGCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAACTAGTGGGGGTGGGGATTAATTACTATATGCTTGGACATTTTTCCGTTCTTCAAGATTGACGCATCGATCGATAAATGTATATATTTGTAGCTAAGAAGGGGTAAATATACTAGGAGAGAATACACTCTATTGTCATTGAGTTTGTCTCTGTCAACGATTTGCTACTGACATT] [+] EMBL AK070276 [TTCAGACAATTAACATCACTAGGAGAGAAATCAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCC GA TCGACATCAACACCAAGACCGTCGTCCCGCGCTCGGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGTTCCAGGCGATCCACTGGCACGCGCCGTCGGAGCACACCATCAACGGCAGGCGCTTCCCGCTCGAGCTCCACCTCGTCCACAAGTCCGACGCCGACGGCGGCCTCGCCGTCATCTCCGTCCTCTACAAGCTCGGCGCCCCGGACTCCTTCTACCTCCAGTTCAAGGACCACCTCGCCGAGCTCGGCGCCGACGAGTGCGACTTCAGCAAGGAGGAGGCCCACGTCGCCGCCGGGCTGGTGCAGATGAGGTCGCTGCAGAAGCGCACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGACGCCGCCGTGCGGCGAGAACGTGGTGTGGAGCGTGCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAGCTGCACCTGCTCATGTCGCCATTGCCGACTAAGGACGCCAGGCCGGCGCAGCCGCTCAATGGCAGGGCCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCCAAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTGGTTTTTTGTATTTGATGTTGAGTTGATTTGATTAACATTTCGACGTATGATATGCACTATATATAATTAATTAACATCGCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAACTAGTGGGGGTGGGGATTAATTACTATATGCTTGGACATTTTTCCGTTCTTCAAGATTGACGCATCGATCGATAAATGTATATATTTGTAGCTAAGAAGGGGTAAATATACTAGGAGAGAATACACTCTATTGTCATTGAGTTTGTCTCTGTCAACGATTTGCTACTGACATT] [+] EMBL C72382 [ CATCACTAGGAGAGAAATCAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTTCGGCGAGGGGAGGTCGCAGTCGCCNGATTCGACATNAACAC ] [+] EMBL C72746 [ TCACTAGGAGAGAAATCAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCC GA TCGACATCAACACCAAGACCGTCGTCCCGCGCTCGGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGTTCCAGGCGAT CANTGGCANGCGCCGTCGGAG AAANCATCAACGGCAAGC ] consensusID : consensus_8611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [TTAGACAATTAACATCACTGGGAGAGAAATAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCCGATCGACATCAACACCAAGACCGTCGTCCCGCGCTCCGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGCTCCAGGCGATCCACTGGCACGCGCCGTCGGAGCACACCATCAACGGCAGGCGCTTCCCGCTCGAGCTCCACCTCGTCCACAAGTCCGACGCCGACGGCGGCCTCGCCGTCATCTNCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTNCAGGAATTCGCCAAGGGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTGGGTTTTTTGGATTTGATGGTTGAGNTGATTTGATTAACATTTTCGACGTATGATATGCACTATATATAATTAATTAACATCG] [+] EMBL CB096616 [TTAGACAATTAACATCACTGGGAGAGAAATAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCCGATCGACATCAACACCAAGACCGTCGTCCCGCGCTCCGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGCTCCAGGCGATCCACTGGCACGCGCCGTCGGAGCACACCATCAACGGCAGGCGCTTCCCGCTCGAGCTCCACCTCGTCCACAAGTCCGACGCCGACGGCGGCCTCGCCGTCATCTNCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTNCAGGAATTCGCCAAGGGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTGGGTTTTTTGGATTTGATGGTTGAGNTGATTTGATTAACATTTTCGACGTATGATATGCACTATATATAATTAATTAACATCG] consensusID : consensus_8611#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [GGTGCAGATGAGGTCGCTGCAGAAGCGCACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGACGCCGCCGTGCGGCGAGAACGTGGTGTGGAGCGTGCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAGCTGCACCTGCTCATGTCGCCATTGCCGACCAAGGACGCCAGGCCGGCGCAGCCGCTCAATGGCAGGGCCGTCTTNTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCCAAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTGGTTTTTTGTATTTGATGTTGAGTTGATTTGATTAACATTTCGACGTATGATATGCACTATATATAATTAATTAACATCGCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAAAAAAAAAAAAAA] [+] EMBL AU172479 [GGTGCAGATGAGGTCGCTGCAGAAGCGCACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGACGCCGCCGTGCGGCGAGAACGTGGTGTGGAGCGTGCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAGCTGCACCTGCTCATGTCGCCATTGCCGACCAAGGACGCCAGGCCGGCGCAGCCGCTCAATGGCAGGGCCGTCTTNTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCCAAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTGGTTTTTTGTATTTGATGTTGAGTTGATTTGATTAACATTTCGACGTATGATATGCACTATATATAATTAATTAACATCGCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8611#0 TTCAGACAATTAACATCACTAGGAGAGAAATCAAGAAACAAGCTAGCCAGCAATGGTGTC 60 consensus_8611#2 ------------------------------------------------------------ consensus_8611#1 ------------------------------------------------------------ consensus_8611#0 TCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCA 120 consensus_8611#2 ------------------------------------------------------------ consensus_8611#1 ------------------------------------------------------------ consensus_8611#0 TGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTC 180 consensus_8611#2 ------------------------------------------------------------ consensus_8611#1 ------------------------------------------------------------ consensus_8611#0 GAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCC 240 consensus_8611#2 ------------------------------------------------------------ consensus_8611#1 ------------------------------------------------------------ consensus_8611#0 GATCGACATCAACACCAAGACCGTCGTCCCGCGCTCGGACCTCGACACGCTGGACCGCAA 300 consensus_8611#2 ------------------------------------------------------------ consensus_8611#1 ------------------------------------------------------------ consensus_8611#0 CTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCA 360 consensus_8611#2 ------------------------------------------------------------ consensus_8611#1 ----------------------------TTAGACAATTAACATCACTGGGAGAGAAATAA 32 consensus_8611#0 CGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGTTCCAGGCGATCCACTG 420 consensus_8611#2 ------------------------------------------------------------ consensus_8611#1 GAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCC 92 consensus_8611#0 GCACGCGCCGTCGGAGCACACCATCAACGGCAGGCGCTTCCCGCTCGAGCTCCACCTCGT 480 consensus_8611#2 ------------------------------------------------------------ consensus_8611#1 TCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTAC 152 consensus_8611#0 CCACAAGTCCGACGCCGACGGCGGCCTCGCCGTCATCTCCGTCCTCTACAAGCTCGGCGC 540 consensus_8611#2 ------------------------------------------------------------ consensus_8611#1 ATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATG 212 consensus_8611#0 CCCGGACTCCTTCTACCTCCAGTTCAAGGACCACCTCGCCGAGCTCGGCGCCGACGAGTG 600 consensus_8611#2 ------------------------------------------------------------ consensus_8611#1 TGCGGCGAGGGGAGGTCGCAGTCGCCGATCGACATCAACACCAAGACCGTCGTCCCGCGC 272 consensus_8611#0 CGACTTCAGCAAGGAGGAGGCCCACGTCGCCGCCGGGCTGGTGCAGATGAGGTCG----C 656 consensus_8611#2 ---------------------------------------GGTGCAGATGAGGTCG----C 17 consensus_8611#1 TCCGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAAC 332 ** *** * consensus_8611#0 TGCAGAAGCG-CACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGA-CGCCGCCGTG 714 consensus_8611#2 TGCAGAAGCG-CACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGA-CGCCGCCGTG 75 consensus_8611#1 GGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAG 392 *** * *** ** * * * * * * **** * *** * ***** * consensus_8611#0 CGGCGAGAACGTGGTGTGGAGCGT--GCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAG 772 consensus_8611#2 CGGCGAGAACGTGGTGTGGAGCGT--GCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAG 133 consensus_8611#1 CCGTACAGGCTCCAGGCGATCCACTGGCACGCGCCGTCGGAGCACACCATCAACGGCAGG 452 * * * * * * ** ** * * * * * * ** * * * * consensus_8611#0 CTGCACCTGCTCATGTCGCCATTGCCGACTAAGGACGCCAGGCCGGCGCAGCCGCTCAAT 832 consensus_8611#2 CTGCACCTGCTCATGTCGCCATTGCCGACCAAGGACGCCAGGCCGGCGCAGCCGCTCAAT 193 consensus_8611#1 CGCTTCCCGCTCGAGCT-CCACC-TCGTCCACAAGTCCGACGCCGACGGCGGC-CTCGCC 509 * ** **** * *** ** * * * * **** ** * * *** consensus_8611#0 GGCAGGGCCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCC 892 consensus_8611#2 GGCAGGGCCGTCTTNTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCC 253 consensus_8611#1 GTCATCTNCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTNCAGGAATTCGCC 569 * ** ****** ******************************** ************ consensus_8611#0 AAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTT-GGTTTTTTGTATTTGATG-TT 950 consensus_8611#2 AAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTGGTTTTTTGTATTTGATG-TT 312 consensus_8611#1 AAGGGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTGGGTTTTTTGGATTTGATGGTT 629 *** ********************************** ********* ******** ** consensus_8611#0 GAGTTGATTTGATTAACATTT-CGACGTATGATATGCACTATATATAATTAATTAACATC 1009 consensus_8611#2 GAGTTGATTTGATTAACATTT-CGACGTATGATATGCACTATATATAATTAATTAACATC 371 consensus_8611#1 GAGNTGATTTGATTAACATTTTCGACGTATGATATGCACTATATATAATTAATTAACATC 689 *** ***************** ************************************** consensus_8611#0 GCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAACTAGT 1069 consensus_8611#2 GCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAAAAAAA 431 consensus_8611#1 G----------------------------------------------------------- 690 * consensus_8611#0 GGGGGTGGGGATTAATTACTATATGCTTGGACATTTTTCCGTTCTTCAAGATTGACGCAT 1129 consensus_8611#2 AAAAAAA----------------------------------------------------- 438 consensus_8611#1 ------------------------------------------------------------ consensus_8611#0 CGATCGATAAATGTATATATTTGTAGCTAAGAAGGGGTAAATATACTAGGAGAGAATACA 1189 consensus_8611#2 ------------------------------------------------------------ consensus_8611#1 ------------------------------------------------------------ consensus_8611#0 CTCTATTGTCATTGAGTTTGTCTCTGTCAACGATTTGCTACTGACATT 1237 consensus_8611#2 ------------------------------------------------ consensus_8611#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||