Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8618 cluster # 8618       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8618#0 length = 1075 sequences # 3  
consensus_8618#1 length = 744 sequences # 2  

consensusID : consensus_8618#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1075
fasta sequence
                              [GGAGATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGACCGCGCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGAGGTGCATCGACAAGGTGTTCGACTTTGTGAAGCTGGAGGAGCTGTACTACGCCGGGAGCCATGGAATGGACATCAGGGGCCCCACCGCGGCAGCGTCGGAGTACAACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTCCAGCCGGCCGCCGATTTCCTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGGATGGCGAGTATAAGGGGTTCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTACCGCTGCGTCGACGAGGCGGAATGGGGCGTGCTGGACGGCAAGGTGAGGGCGGTGATAGAGGGCTACCCGGATCTCCGTCTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATCGACTGGGACAAAGGCTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCCGATATACA-TTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGATTAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGCTAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAAGAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCCTT]

[+] EMBL AK109902             [GGAGATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGACCGCGCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGAGGTGCATCGACAAGGTGTTCGACTTTGTGAAGCTGGAGGAGCTGTACTACGCCGGGAGCCATGGAATGGACATCAGGGGCCCCACCGCGGCAGCGTCGGAGTACAACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTCCAGCCGGCCGCCGATTTCCTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGGATGGCGAGTATAAGGGGTTCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTACCGCTGCGTCGACGAGGCGGAATGGGGCGTGCTGGACGGCAAGGTGAGGGCGGTGATAGAGGGCTACCCGGATCTCCGTCTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATCGACTGGGACAAAGGCTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCCGATATACA TTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGATTAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGCTAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAAGAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCC  ]
[+] EMBL CA764339             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCTGGAGATCCGCCCTGTCATCGACTGGGACAAAGGCTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCCGATATACATTTGGAGACGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGATTAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGCTAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAACAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCC  ]
[+] EMBL AA751294             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCCTT]


>consensus_8618#0 GGAGATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGA CCGCGCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTGGCGAAGCACTTCCC GACGGCGATCGTGAGCGGGAGGTGCATCGACAAGGTGTTCGACTTTGTGAAGCTGGAGGA GCTGTACTACGCCGGGAGCCATGGAATGGACATCAGGGGCCCCACCGCGGCAGCGTCGGA GTACAACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTCCAGCCGGCCGCCGA TTTCCTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGGATGGCGAGTATAAG GGGTTCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTACCGCTGCGTCGACGA GGCGGAATGGGGCGTGCTGGACGGCAAGGTGAGGGCGGTGATAGAGGGCTACCCGGATCT CCGTCTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATCGACTGGGACAAAGG CTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCC GATATACATTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGG ACAGGGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCT GCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGATTAAGATCAACGG GGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGCTAGCTAGCTTTT TGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAAGAACAACAACAA GAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCGGTGGTGAAAACC CGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTA AATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCCTT



consensusID : consensus_8618#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 744
fasta sequence
                              [CTTGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGT-CGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCAC-TTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCATGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCTCAGGTCGAGAACAACA]

[+] EMBL CB644544             [CTTGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGT CGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCAC TTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCATGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCTCAGGTCGAGAACAACA]
[+] EMBL AU032093             [                                                                                                                    ACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCA NAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGTCGCCCTCGCCGCCGG GTNCGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTTCCCCATCGTCGACGACCCCGACGNCGACTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAG TTTGCGAAG ACTTTNCCGACGGCGATCGTGAGCGGGCGG                                                                                                                                                                                                                                        ]


>consensus_8618#1 CTTGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGC CTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGC TGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGG CGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGT CGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGTCGACGAGGAGCACG CCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGT CGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCG ACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGA AGCACTTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGA AGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCC GCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCG AGTTCCTCCCCATGATCGAGCATGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCC CGGGCGCTCAGGTCGAGAACAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8618#0      GGAGATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGA 60
consensus_8618#1      ------------------------------------------------------------
                                                                                  

consensus_8618#0      CCGCGCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTGGCGAAGCACTTCCC 120
consensus_8618#1      ----------------------------------------------------------CT 2
                                                                                * 

consensus_8618#0      GACGGCGATCGTGAGCGGGAGGTG-CATCGACAA----GGTGTTCGACTTTGTGAAGCTG 175
consensus_8618#1      TGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCT 62
                         ** * ** ***  ** ****  * * *   *    *  *     * * ***  **  

consensus_8618#0      GAGGAGCTGTACTACGCCGGGAGCCATGGAA-TGGACATCAGGGGCCCCACCGCGGCAGC 234
consensus_8618#1      GAGCAGGTGGGC-GCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCT 121
                      *** ** **  *  ** ***  **   * *  ***    *    * **   * ** *   

consensus_8618#0      GTCGGAGTACA-ACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTCCAGCCGG 293
consensus_8618#1      GTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCT----GCAGG 177
                      **    ****   ** *  *  *  ** *  ** * * *  **   * * *    ** **

consensus_8618#0      CCGCCGATTTCCTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGGATGGCGA 353
consensus_8618#1      CGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCG-GCTG--------GGTGGAGT 228
                      * **  *    ***    **  **  * * **      * ****        * *** * 

consensus_8618#0      GTATAAGGGGTTCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTACCGCTGCG 413
consensus_8618#1      CCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCC-GCCGCCGCCCTCGCCGCCG--GCG 285
                        **  ***  ***  *       **  ****    ***    *   * *  ***  ***

consensus_8618#0      TCGACGAGGCGGAATGGGGCGTGCTGGACGGCAAGGTGAGGG-CGGTGATAGAGGGCTAC 472
consensus_8618#1      TCGACGAGG---AGCACGCCGC-CTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTC 341
                      *********   *    * **  ***** *** ***     * *** * * *  *  * *

consensus_8618#0      CCGGATCTCCGTCTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATCGACTGG 532
consensus_8618#1      GAGAA----GGTGGTGGC--GGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTAC 395
                        * *     **    **  ** *   **** *  * *****  *    ** ******  

consensus_8618#0      GACAAAGGCTCCGCACTCCAGTTC--CTGCTCAAATCTCTCGGTTATGAGGGGCGCAACA 590
consensus_8618#1      GACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATG 455
                      ***     *  * * * *    **  *  * *  *   * *  * ***** *   * *  

consensus_8618#0      ATGTTTTCCCGATATACATTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTGTTGC 650
consensus_8618#1      CGGATGGCCGTGCGCAGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGCGGTGC 515
                        * *  **      *   *** ** *  *   ******  ***  *     ** * ***

consensus_8618#0      -GCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCC-CAAAGGAGACAGCTGC 708
consensus_8618#1      CGCGACAAGGTGTTCGAGTTCGTGAAGCTCG---CCGAGCTGTACTACGCGGGGAGCCAC 572
                       ** *** **     *   * *  *  ** *   ** ** *   * * *  *  ***  *

consensus_8618#0      ATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGAT 768
consensus_8618#1      GGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGC----CAAGTCTCCTC---C 625
                        * *  **     * *  **  *    *  * *  *   *    *****          

consensus_8618#0      TAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGC 828
consensus_8618#1      CCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCATGT 685
                        * * *** ** * *      * *   * **   ** *  ***     **  ***  * 

consensus_8618#0      TAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAA 888
consensus_8618#1      GCACCAGCGACTCGAGC---AGGCCACCAGCTCCATCCCGGGCGCTCAGGTCGAGAACAA 742
                         * ***   * *  *   *      *   * * *   ** *  * **    **** **

consensus_8618#0      GAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCG 948
consensus_8618#1      CA---------------------------------------------------------- 744
                       *                                                          

consensus_8618#0      GTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAG 1008
consensus_8618#1      ------------------------------------------------------------
                                                                                  

consensus_8618#0      GTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTG 1068
consensus_8618#1      ------------------------------------------------------------
                                                                                  

consensus_8618#0      TGGCCTT 1075
consensus_8618#1      -------
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)