These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1075 fasta sequence [GGAGATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGACCGCGCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGAGGTGCATCGACAAGGTGTTCGACTTTGTGAAGCTGGAGGAGCTGTACTACGCCGGGAGCCATGGAATGGACATCAGGGGCCCCACCGCGGCAGCGTCGGAGTACAACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTCCAGCCGGCCGCCGATTTCCTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGGATGGCGAGTATAAGGGGTTCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTACCGCTGCGTCGACGAGGCGGAATGGGGCGTGCTGGACGGCAAGGTGAGGGCGGTGATAGAGGGCTACCCGGATCTCCGTCTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATCGACTGGGACAAAGGCTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCCGATATACA-TTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGATTAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGCTAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAAGAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCCTT] [+] EMBL AK109902 [GGAGATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGACCGCGCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGAGGTGCATCGACAAGGTGTTCGACTTTGTGAAGCTGGAGGAGCTGTACTACGCCGGGAGCCATGGAATGGACATCAGGGGCCCCACCGCGGCAGCGTCGGAGTACAACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTCCAGCCGGCCGCCGATTTCCTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGGATGGCGAGTATAAGGGGTTCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTACCGCTGCGTCGACGAGGCGGAATGGGGCGTGCTGGACGGCAAGGTGAGGGCGGTGATAGAGGGCTACCCGGATCTCCGTCTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATCGACTGGGACAAAGGCTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCCGATATACA TTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGATTAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGCTAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAAGAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCC ] [+] EMBL CA764339 [ GCTGGAGATCCGCCCTGTCATCGACTGGGACAAAGGCTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCCGATATACATTTGGAGACGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGATTAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGCTAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAACAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCC ] [+] EMBL AA751294 [ TGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCCTT] consensusID : consensus_8618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 744 fasta sequence [CTTGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGT-CGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCAC-TTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCATGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCTCAGGTCGAGAACAACA] [+] EMBL CB644544 [CTTGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGT CGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCAC TTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCATGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCTCAGGTCGAGAACAACA] [+] EMBL AU032093 [ ACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCA NAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGTCGCCCTCGCCGCCGG GTNCGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTTCCCCATCGTCGACGACCCCGACGNCGACTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAG TTTGCGAAG ACTTTNCCGACGGCGATCGTGAGCGGGCGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8618#0 GGAGATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGA 60 consensus_8618#1 ------------------------------------------------------------ consensus_8618#0 CCGCGCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTGGCGAAGCACTTCCC 120 consensus_8618#1 ----------------------------------------------------------CT 2 * consensus_8618#0 GACGGCGATCGTGAGCGGGAGGTG-CATCGACAA----GGTGTTCGACTTTGTGAAGCTG 175 consensus_8618#1 TGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCT 62 ** * ** *** ** **** * * * * * * * * *** ** consensus_8618#0 GAGGAGCTGTACTACGCCGGGAGCCATGGAA-TGGACATCAGGGGCCCCACCGCGGCAGC 234 consensus_8618#1 GAGCAGGTGGGC-GCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCT 121 *** ** ** * ** *** ** * * *** * * ** * ** * consensus_8618#0 GTCGGAGTACA-ACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTCCAGCCGG 293 consensus_8618#1 GTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCT----GCAGG 177 ** **** ** * * * ** * ** * * * ** * * * ** ** consensus_8618#0 CCGCCGATTTCCTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGGATGGCGA 353 consensus_8618#1 CGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCG-GCTG--------GGTGGAGT 228 * ** * *** ** ** * * ** * **** * *** * consensus_8618#0 GTATAAGGGGTTCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTACCGCTGCG 413 consensus_8618#1 CCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCC-GCCGCCGCCCTCGCCGCCG--GCG 285 ** *** *** * ** **** *** * * * *** *** consensus_8618#0 TCGACGAGGCGGAATGGGGCGTGCTGGACGGCAAGGTGAGGG-CGGTGATAGAGGGCTAC 472 consensus_8618#1 TCGACGAGG---AGCACGCCGC-CTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTC 341 ********* * * ** ***** *** *** * *** * * * * * * consensus_8618#0 CCGGATCTCCGTCTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATCGACTGG 532 consensus_8618#1 GAGAA----GGTGGTGGC--GGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTAC 395 * * ** ** ** * **** * * ***** * ** ****** consensus_8618#0 GACAAAGGCTCCGCACTCCAGTTC--CTGCTCAAATCTCTCGGTTATGAGGGGCGCAACA 590 consensus_8618#1 GACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATG 455 *** * * * * * ** * * * * * * * ***** * * * consensus_8618#0 ATGTTTTCCCGATATACATTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTGTTGC 650 consensus_8618#1 CGGATGGCCGTGCGCAGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGCGGTGC 515 * * ** * *** ** * * ****** *** * ** * *** consensus_8618#0 -GCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCC-CAAAGGAGACAGCTGC 708 consensus_8618#1 CGCGACAAGGTGTTCGAGTTCGTGAAGCTCG---CCGAGCTGTACTACGCGGGGAGCCAC 572 ** *** ** * * * * ** * ** ** * * * * * *** * consensus_8618#0 ATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGAT 768 consensus_8618#1 GGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGC----CAAGTCTCCTC---C 625 * * ** * * ** * * * * * * ***** consensus_8618#0 TAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGC 828 consensus_8618#1 CCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCATGT 685 * * *** ** * * * * * ** ** * *** ** *** * consensus_8618#0 TAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAA 888 consensus_8618#1 GCACCAGCGACTCGAGC---AGGCCACCAGCTCCATCCCGGGCGCTCAGGTCGAGAACAA 742 * *** * * * * * * * * ** * * ** **** ** consensus_8618#0 GAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCG 948 consensus_8618#1 CA---------------------------------------------------------- 744 * consensus_8618#0 GTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAG 1008 consensus_8618#1 ------------------------------------------------------------ consensus_8618#0 GTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTG 1068 consensus_8618#1 ------------------------------------------------------------ consensus_8618#0 TGGCCTT 1075 consensus_8618#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||