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Oryza sativa
cluster # 8621 cluster # 8621       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8621#0 length = 2311 sequences # 2  
consensus_8621#1 length = 1277 sequences # 2  
consensus_8621#2 length = 354 sequences # 1  

consensusID : consensus_8621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2311
fasta sequence
                              [TACAAGCTAGCTTTGCTTCTTCTTCTTCGTCTTCTTGTACCAAATCATTCAAAGTTTTCTTTCTTCAAGCCTTCAATCTTCTATATATATCTCCCTCCATGATCAACCAGCTATAGCTACCTCACTCCAACAATCGCCGACCACGATGGCCACCACGAGGAGCGGCGTCGGCGGCGCCATCAGCGACCCATTTGCGACGCCGGGGTTCCGCTTCTACCCGACGGAGGAGGAGCTTCTCGGCTTCTACCTCCGCCACCGCCTCGCCGGCACGAGGCCCGACGTCGAGCGCGTCATCCCCGTCGTCGACGTCTACGGCTACCACCCGTCCCAGCTCGCCGCCCTGGCCGGGGAGGCGAGCGCGCGCGACACGGAGCAGTGGTTCTTCTTCTGCCCGCGCGCCGAGCGGGAGCTCCACGGCGGCCGGCCGGCGCGCACCACGCCGTCGGGGTACTGGAAGGCCACGGGATCCCCGTCCTGCGTCATCTCCTCCGCCACAAACAGGGTCATCGGCGTCAAGCGCACCATGGTGTTCTACCAGGGCCGCGCCCCCACCGGCACCAAGACCCGCTGGAAGATGAACGAGTACAAGGCCGTCGCCGACGACGCCGACGCCGCCGCCGCCGCCATGCTCCACCCAATGGCGCCTCCCAGGCTGAGGAACGAGCTGGGAGTGTGCCGGGTGTACATCAGCACGGGCACGCTGAGATCGTTCGACCGCCGGCCGCTCGATAATCAAGCGGCGGCGCCCACCAAGCAACAGGTGATGCCATCTTTGACGGCGGCGGCGGCGGTGAACACGAACCTCTGCGGCGGCGGCGGCGGCGTCGTGTTCGCCGGTGCACAAGGAGACAGCTCCCGCGACTGCAGCTCGTCGTCGGGGTCGCGAGAACTCGCCGGCGGCGCCGATGGGTCTGAAGACGACGCCATCGACTGGAACTCGCTCATCAGTAGCGCCACTGCTGATGATCTCGGCTTCAACACCGTCGTTGGTTTTGATCCTAGCATCGTCGGATCATGGCCACAAGTCTAGTGCTTGATTACGCGTAATATAAAATTAATCGAGTTTAGTGATCAGTTAGTTTTTTGTTTTTTTTGCAAGAAGTTCAAAAATTATTGCTGTGTGTTTTGCACTGAGTAGCAAAGATGGGAGGATTAGAAGATGAATCGATTAGTTTGCAAATCAGGTGAATTAATTAGAGTAATTAACATCTGTAGTAATAGTAAGTAGAAAATCAAAATGAGAAGTTGTAGCAGAAAGTGTATACTACCACAAATCCGTTCTTAGTCCGACTCCGAATTAATCCCAGACGGAAGATCGATCGAGACCGATTCGGAGATGGAGCCGATTTTGCTTGGAAATCAATGGAGAGGTGAAATGGGATCGGATTCATGGGCGGCTACATAAGCAGGAGTCGAGAGGCCGCACCAGCTCATCATCATCATCATCATCATCTCATTCCCCGCGGTTCGATCCTCCTCGCGCTCTCGTCGTCGTCGTCGTCATCTCCGGTTGATCGATCACTTCACTTCAAGTCGATGTCGGCCATGGCGGCTCTCCCTGTGCTGCTCCCGACCCCGCCGAGGAGCAAGATGCTGCCGCTGCTCCCGACGCCGTGCCTCGTCATCCTCCCCGCCAACTTCGCCACGTCGGTGGCCTCCAACGCGCCCAAGCCCGGCCGCGCCGACGCCGCCGACAGGTGGGACACGCACAAGAAACCCACCAGCTCGTCGTCGTCGTCAAGCTCCAGCACCGGGAGCGCCAGCCGCGCCGCCGCCTGCGAGCGCAAAGAACCCGGCAGCCCAGCGTCGTCGTCGTCAAGCAGCGGCGGGAAGCCCGGCCGAGCCGACTCCTGCGAGCGCTGGGACACGAACAAGGCCAAGAACCAGATCATCAGCAGCGGCCGCCTCACGCCGGCGTCGTCGTCGTCGACGAACGCGCGCTGGGACATGAACAAGGTCAAGAACACGGCGCCGCCGTCGAACAGCAACAAGCGGCCGGTGAGCCGCGGGTCCGCCTCGGCCGAGCGCTGGGACATCAGCAAGAAGCATCGCTCGCAGGACGCCGCCGCCGCCGCTCTCGGCTCGGCGAGTGATCGGAAGTTGACGACGGTGGCAAAGCCGCAGCAGCCGCTGTTCTCTGGGCCGGCGTTCCTGACCTCGCCGGAGCCAAGCATGCTTCCCATGCCCACCTTCTTGATGGCCCGATAGCTTCTGCTTGTGCATTTCAACTTCAGATGAATCGGACTGTAGTTAGGATGGGATTTGATGAAGCATGTTATTCTTTGTGGGTCTGTTTGTGATCAATTGAATT]

[+] EMBL AK106277             [TACAAGCTAGCTTTGCTTCTTCTTCTTCGTCTTCTTGTACCAAATCATTCAAAGTTTTCTTTCTTCAAGCCTTCAATCTTCTATATATATCTCCCTCCATGATCAACCAGCTATAGCTACCTCACTCCAACAATCGCCGACCACGATGGCCACCACGAGGAGCGGCGTCGGCGGCGCCATCAGCGACCCATTTGCGACGCCGGGGTTCCGCTTCTACCCGACGGAGGAGGAGCTTCTCGGCTTCTACCTCCGCCACCGCCTCGCCGGCACGAGGCCCGACGTCGAGCGCGTCATCCCCGTCGTCGACGTCTACGGCTACCACCCGTCCCAGCTCGCCGCCCTGGCCGGGGAGGCGAGCGCGCGCGACACGGAGCAGTGGTTCTTCTTCTGCCCGCGCGCCGAGCGGGAGCTCCACGGCGGCCGGCCGGCGCGCACCACGCCGTCGGGGTACTGGAAGGCCACGGGATCCCCGTCCTGCGTCATCTCCTCCGCCACAAACAGGGTCATCGGCGTCAAGCGCACCATGGTGTTCTACCAGGGCCGCGCCCCCACCGGCACCAAGACCCGCTGGAAGATGAACGAGTACAAGGCCGTCGCCGACGACGCCGACGCCGCCGCCGCCGCCATGCTCCACCCAATGGCGCCTCCCAGGCTGAGGAACGAGCTGGGAGTGTGCCGGGTGTACATCAGCACGGGCACGCTGAGATCGTTCGACCGCCGGCCGCTCGATAATCAAGCGGCGGCGCCCACCAAGCAACAGGTGATGCCATCTTTGACGGCGGCGGCGGCGGTGAACACGAACCTCTGCGGCGGCGGCGGCGGCGTCGTGTTCGCCGGTGCACAAGGAGACAGCTCCCGCGACTGCAGCTCGTCGTCGGGGTCGCGAGAACTCGCCGGCGGCGCCGATGGGTCTGAAGACGACGCCATCGACTGGAACTCGCTCATCAGTAGCGCCACTGCTGATGATCTCGGCTTCAACACCGTCGTTGGTTTTGATCCTAGCATCGTCGGATCATGGCCACAAGTCTAGTGCTTGATTACGCGTAATATAAAATTAATCGAGTTTAGTGATCAGTTAGTTTTTTGTTTTTTTTGCAAGAAGTTCAAAAATTATTGCTGTGTGTTTTGCACTGAGTAGCAAAGATGGGAGGATTAGAAGATGAATCGATTAGTTTGCAAATCAGGTGAATTAATTAGAGTAATTAACATCTGTAGTAATAGTAAGTAGAAAATCAAAATGAGAAGTTGTAGCAGAAAGTGTATACTACCACAAATCCGTTCTTAGTCCGACTCCGAATTAATCCCAGACGGAAGATCGATCGAGACCGATTCGGAGATGGAGCCGATTTTGCTTGGAAATCAATGGAGAGGTGAAATGGGATCGGATTCATGGGCGGCTACATAAGCAGGAGTCGAGAGGCCGCACCAGCTCATCATCATCATCATCATCATCTCATTCCCCGCGGTTCGATCCTCCTCGCGCTCTCGTCGTCGTCGTCGTCATCTCCGGTTGATCGATCACTTCACTTCAAGTCGATGTCGGCCATGGCGGCTCTCCCTGTGCTGCTCCCGACCCCGCCGAGGAGCAAGATGCTGCCGCTGCTCCCGACGCCGTGCCTCGTCATCCTCCCCGCCAACTTCGCCACGTCGGTGGCCTCCAACGCGCCCAAGCCCGGCCGCGCCGACGCCGCCGACAGGTGGGACACGCACAAGAAACCCACCAGCTCGTCGTCGTCGTCAAGCTCCAGCACCGGGAGCGCCAGCCGCGCCGCCGCCTGCGAGCGCAAAGAACCCGGCAGCCCAGCGTCGTCGTCGTCAAGCAGCGGCGGGAAGCCCGGCCGAGCCGACTCCTGCGAGCGCTGGGACACGAACAAGGCCAAGAACCAGATCATCAGCAGCGGCCGCCTCACGCCGGCGTCGTCGTCGTCGACGAACGCGCGCTGGGACATGAACAAGGTCAAGAACACGGCGCCGCCGTCGAACAGCAACAAGCGGCCGGTGAGCCGCGGGTCCGCCTCGGCCGAGCGCTGGGACATCAGCAAGAAGCATCGCTCGCAGGACGCCGCCGCCGCCGCTCTCGGCTCGGCGAGTGATCGGAAGTTGACGACGGTGGCAAAGCCGCAGCAGCCGCTGTTCTCTGGGCCGGCGTTCCTGACCTCGCCGGAGCCAAGCATGCTTCCCATGCCCACCTTCTTGATGGCCCGATAGCTTCTGCTTGTGCATTTCAACTTCAGATGAATCGGACTGTAGTTAGGATGGGATTTGATGAAGCATGTTATTCTTTGTGGGTCTGTTTGTGATCAATTGAATT]
[+] EMBL AK109939             [                                                                                                                         TCACTCCAACAATCGCCGACCACGATGGCCACCACGAGGAGCGGCGTCGGCGGCGCCATCAGCGACCCATTTGCGACGCCGGGGTTCCGCTTCTACCCGACGGAGGAGGAGCTTCTCGGCTTCTACCTCCGCCACCGCCTCGCCGGCACGAGGCCCGACGTCGAGCGCGTCATCCCCGTCGTCGACGTCTACGGCTACCACCCGTCCCAGCTCGCCGCCCTGGCCGGGGAGGCGAGCGCGCGCGACACGGAGCAGTGGTTCTTCTTCTGCCCGCGCGCCGAGCGGGAGCTCCACGGCGGCCGGCCGGCGCGCACCACGCCGTCGGGGTACTGGAAGGCCACGGGATCCCCGTCCTGCGTCATCTCCTCCGCCACAAACAGGGTCATCGGCGTCAAGCGCACCATGGTGTTCTACCAGGGCCGCGCCCCCACCGGCACCAAGACCCGCTGGAAGATGAACGAGTACAAGGCCGTCGCCGACGACGCCGACGCCGCCGCCGCCGCCATGCTCCACCCAATGGCGCCTCCCAGGCTGAGGAACGAGCTGGGAGTGTGCCGGGTGTACATCAGCACGGGCACGCTGAGATCGTTCGACCGCCGGCCGCTCGATAATCAAGCGGCGGCGCCCACCCAGCAACAGGTGATGCCATCTTTGACGGCGGCGGCGGCGGTGAACACGAACCTCTGCGGCGGCGGCGGCGGCGTCGTGTTCGCCGGTGCACAAGGAGACAGCTCCCGCGACTGCAGCTCGTCGTCGGGGTCGCGAGAACTCGCCGGCGGCGCCGATGGGTCTGAAGACGACGCCATCGACTGGAACTCGCTCATCAGTAGCGCCACTGCTGATGATCTCGGCTTCAACACCGTCGTTGGTTTTGATCCTAGCATCGTCGGATCATGGCCACAAGTCTAGTGCTTGATTACGCGTAATATAAAATTAATCGAGTTTAGTGATCAGTTAGTTTTTTG TTTTTTTGCAAGAAGTTCAAAAATTATTGCTGTGTGTTTTGCACTGAGTAGCAAAGATGGGAGGATTAGAAGATGAATCGATTAGTTTGCAAATCAGGTGAATTAATTAGAGTAATTAACATCTGTAGTAATAGTAAGTAGAAAATCAAAATGAGAAGTTGTAGCAGAAAGTATATACTACCACAAATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]


>consensus_8621#0 TACAAGCTAGCTTTGCTTCTTCTTCTTCGTCTTCTTGTACCAAATCATTCAAAGTTTTCT TTCTTCAAGCCTTCAATCTTCTATATATATCTCCCTCCATGATCAACCAGCTATAGCTAC CTCACTCCAACAATCGCCGACCACGATGGCCACCACGAGGAGCGGCGTCGGCGGCGCCAT CAGCGACCCATTTGCGACGCCGGGGTTCCGCTTCTACCCGACGGAGGAGGAGCTTCTCGG CTTCTACCTCCGCCACCGCCTCGCCGGCACGAGGCCCGACGTCGAGCGCGTCATCCCCGT CGTCGACGTCTACGGCTACCACCCGTCCCAGCTCGCCGCCCTGGCCGGGGAGGCGAGCGC GCGCGACACGGAGCAGTGGTTCTTCTTCTGCCCGCGCGCCGAGCGGGAGCTCCACGGCGG CCGGCCGGCGCGCACCACGCCGTCGGGGTACTGGAAGGCCACGGGATCCCCGTCCTGCGT CATCTCCTCCGCCACAAACAGGGTCATCGGCGTCAAGCGCACCATGGTGTTCTACCAGGG CCGCGCCCCCACCGGCACCAAGACCCGCTGGAAGATGAACGAGTACAAGGCCGTCGCCGA CGACGCCGACGCCGCCGCCGCCGCCATGCTCCACCCAATGGCGCCTCCCAGGCTGAGGAA CGAGCTGGGAGTGTGCCGGGTGTACATCAGCACGGGCACGCTGAGATCGTTCGACCGCCG GCCGCTCGATAATCAAGCGGCGGCGCCCACCAAGCAACAGGTGATGCCATCTTTGACGGC GGCGGCGGCGGTGAACACGAACCTCTGCGGCGGCGGCGGCGGCGTCGTGTTCGCCGGTGC ACAAGGAGACAGCTCCCGCGACTGCAGCTCGTCGTCGGGGTCGCGAGAACTCGCCGGCGG CGCCGATGGGTCTGAAGACGACGCCATCGACTGGAACTCGCTCATCAGTAGCGCCACTGC TGATGATCTCGGCTTCAACACCGTCGTTGGTTTTGATCCTAGCATCGTCGGATCATGGCC ACAAGTCTAGTGCTTGATTACGCGTAATATAAAATTAATCGAGTTTAGTGATCAGTTAGT TTTTTGTTTTTTTTGCAAGAAGTTCAAAAATTATTGCTGTGTGTTTTGCACTGAGTAGCA AAGATGGGAGGATTAGAAGATGAATCGATTAGTTTGCAAATCAGGTGAATTAATTAGAGT AATTAACATCTGTAGTAATAGTAAGTAGAAAATCAAAATGAGAAGTTGTAGCAGAAAGTG TATACTACCACAAATCCGTTCTTAGTCCGACTCCGAATTAATCCCAGACGGAAGATCGAT CGAGACCGATTCGGAGATGGAGCCGATTTTGCTTGGAAATCAATGGAGAGGTGAAATGGG ATCGGATTCATGGGCGGCTACATAAGCAGGAGTCGAGAGGCCGCACCAGCTCATCATCAT CATCATCATCATCTCATTCCCCGCGGTTCGATCCTCCTCGCGCTCTCGTCGTCGTCGTCG TCATCTCCGGTTGATCGATCACTTCACTTCAAGTCGATGTCGGCCATGGCGGCTCTCCCT GTGCTGCTCCCGACCCCGCCGAGGAGCAAGATGCTGCCGCTGCTCCCGACGCCGTGCCTC GTCATCCTCCCCGCCAACTTCGCCACGTCGGTGGCCTCCAACGCGCCCAAGCCCGGCCGC GCCGACGCCGCCGACAGGTGGGACACGCACAAGAAACCCACCAGCTCGTCGTCGTCGTCA AGCTCCAGCACCGGGAGCGCCAGCCGCGCCGCCGCCTGCGAGCGCAAAGAACCCGGCAGC CCAGCGTCGTCGTCGTCAAGCAGCGGCGGGAAGCCCGGCCGAGCCGACTCCTGCGAGCGC TGGGACACGAACAAGGCCAAGAACCAGATCATCAGCAGCGGCCGCCTCACGCCGGCGTCG TCGTCGTCGACGAACGCGCGCTGGGACATGAACAAGGTCAAGAACACGGCGCCGCCGTCG AACAGCAACAAGCGGCCGGTGAGCCGCGGGTCCGCCTCGGCCGAGCGCTGGGACATCAGC AAGAAGCATCGCTCGCAGGACGCCGCCGCCGCCGCTCTCGGCTCGGCGAGTGATCGGAAG TTGACGACGGTGGCAAAGCCGCAGCAGCCGCTGTTCTCTGGGCCGGCGTTCCTGACCTCG CCGGAGCCAAGCATGCTTCCCATGCCCACCTTCTTGATGGCCCGATAGCTTCTGCTTGTG CATTTCAACTTCAGATGAATCGGACTGTAGTTAGGATGGGATTTGATGAAGCATGTTATT CTTTGTGGGTCTGTTTGTGATCAATTGAATT



consensusID : consensus_8621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1277
fasta sequence
                              [GAACTCGAGCCCCACACATATATATACACATCCCAAGATCACAAATCGAGTGTAATTAAATTTGTGATTTGTGAACCTTCTTCAATTCTACCTAGCTAGCAATCTATTGAGAGGTGAATTGAAGTGCATGCATACAAGAATATATAGATGGTGATGAGCGGCGGCGGCGGCGGCGCGAGGATTGCCAGTGATCCGGCGGCGACGCCGGGGTTCCGATTCTACCCGACGGAGGAGGAGCTGATCGGCTTCTACCTCCGCCACCGCCTCGCCGGCACGAGGGCCGACGACGTCGCCCGCGTCATCCCCGTCGTCGACGTCTACGGCTACCATCCTTCCCAGCTCGCCGCCATGGCCGGGGTGGCGACCGCGGGGGACAGGGAGCAGTGGTTCTTCTTCTGCCCGAGGGCGGAGCGGGAGCTCCACGGCGGCAGGCCGGCGCGGACCACGCCGTCGGGCTACTGGAAGGCCACGGGCTCGCCGTCCTTCGTCTTCTCCTCCTCCGCCGCCGCCGCCGCCAGGGTCATCGGCGTCAAGCGCACCATGGTCTTCTACCAGGGCCGCGCCCCCTCCGGCACCTAGACCAGGTGGAAGATGAACGAGTACAAGGCCGTCGCCGCCGCCGCCGCCGACGACGACCACAACGCCGCTGGCGTGGCCGTGCAGCTGCCACCAATGGCGCCGCCGCCGTCGTCCTCCGCGTGCGTGCGGCTGAGGAACGAGCTGAGCGTGTGCCGGGTGTACGTCAGCACCGGCACGCTCCGATCCTTCGACCGCCGCCCCCTCGACGCGCCCCCGGTGATCAGCCACCATCAACCTCAGCTCCAGCAACAACAACGTCAGCTGCCATCGTCGGCAGCGGCGGCGGCGACGAACGGCAACCTCATCGCCC-TCGCCGGCGGGTACGAGTGCTCACACGACAGCTCCGGTGGCTCGTCGGAAGATGCCGCCATCGACTGGAGCTCGCTGATTACCGCCGCCACCGATTCCGCTACCGCCGCCGTTGATTTCAGCTTCAACGACGACATCGATTTCAGCCCTGCCGCTGTTGGCCCATGGGCGCCACAGCTTTGATTGATTGATTATTTGTGCACACTGCATAATAACTGAATTACTAGTAA-TTAGTAGTAGTAAGTTTGATCAGTGCTTGCTAATTGCCATAGTGTTCTATGTTCAGGTCAACTCGATTGATTTATTACCTCCCAAACTCTCAATTCTGCTTGTCTTTAATTTTTCTTGAATAAATTCTGAACTATGGCCTGTTCTTTTCTTAAAAAAAA]

[+] EMBL AK109534             [GAACTCGAGCCCCACACATATATATACACATCCCAAGATCACAAATCGAGTGTAATTAAATTTGTGATTTGTGAACCTTCTTCAATTCTACCTAGCTAGCAATCTATTGAGAGGTGAATTGAAGTGCATGCATACAAGAATATATAGATGGTGATGAGCGGCGGCGGCGGCGGCGCGAGGATTGCCAGTGATCCGGCGGCGACGCCGGGGTTCCGATTCTACCCGACGGAGGAGGAGCTGATCGGCTTCTACCTCCGCCACCGCCTCGCCGGCACGAGGGCCGACGACGTCGCCCGCGTCATCCCCGTCGTCGACGTCTACGGCTACCATCCTTCCCAGCTCGCCGCCATGGCCGGGGTGGCGACCGCGGGGGACAGGGAGCAGTGGTTCTTCTTCTGCCCGAGGGCGGAGCGGGAGCTCCACGGCGGCAGGCCGGCGCGGACCACGCCGTCGGGCTACTGGAAGGCCACGGGCTCGCCGTCCTTCGTCTTCTCCTCCTCCGCCGCCGCCGCCGCCAGGGTCATCGGCGTCAAGCGCACCATGGTCTTCTACCAGGGCCGCGCCCCCTCCGGCACCTAGACCAGGTGGAAGATGAACGAGTACAAGGCCGTCGCCGCCGCCGCCGCCGACGACGACCACAACGCCGCTGGCGTGGCCGTGCAGCTGCCACCAATGGCGCCGCCGCCGTCGTCCTCCGCGTGCGTGCGGCTGAGGAACGAGCTGAGCGTGTGCCGGGTGTACGTCAGCACCGGCACGCTCCGATCCTTCGACCGCCGCCCCCTCGACGCGCCCCCGGTGATCAGCCACCATCAACCTCAGCTCCAGCAACAACAACGTCAGCTGCCATCGTCGGCAGCGGCGGCGGCGACGAACGGCAACCTCATCGCCC TCGCCGGCGGGTACGAGTGCTCACACGACAGCTCCGGTGGCTCGTCGGAAGATGCCGCCATCGACTGGAGCTCGCTGATTACCGCCGCCACCGATTCCGCTACCGCCGCCGTTGATTTCAGCTTCAACGACGACATCGATTTCAGCCCTGCCGCTGTTGGCCCATGGGCGCCACAGCTTTGATTGATTGATTATTTGTGCACACTGCATAATAACTGAATTACTAGTAA TTAGTAGTAGTAAGTTTGATCAGTGCTTGCTAATTGCCATAGTGTTCTATGTTCAGGTCAACTCGATTGATTTATTACCTCCCAAACTCTCAATTCTGCTTGTCTTTAATTTTTCTTGAATAAATTCTGAACTATGGCCTG                  ]
[+] EMBL BM421012             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCGGCGGCGGCGACGAACGGCAACCTCATCGCCCTTCGCCGGCGGGTACGAGTGCTCACACGACAGCTCCGGTGGCTCGTCGGAAGAT CCGCCATCGACTGGAGCTCGCTGATTACCGCCGCCACCGATTCCGCTACCGCCGCCGTTGATTTCAGCTTCAACGACGACATCGATTTCAGCCCTGCCGCTGTTGGCCCATGGGCGCCACAGCTTTGATTGATTGATAATTTGTGCACACTGCATAATAACTGAATTACTAGTAATTTAGTAGTAGTAAGTTTGATCAGTGCTTGCTAATTCCCATAGT TTCTAT TTCA GTCAACTCGATTGATTTATTACCTCCCAAACTCTCAATTCTGCTTGTCTTTAATTTTTCTTGAATAAATTCTGAACTATGGCCTGTTCTTTTCTTAAAAAAAA]


>consensus_8621#1 GAACTCGAGCCCCACACATATATATACACATCCCAAGATCACAAATCGAGTGTAATTAAA TTTGTGATTTGTGAACCTTCTTCAATTCTACCTAGCTAGCAATCTATTGAGAGGTGAATT GAAGTGCATGCATACAAGAATATATAGATGGTGATGAGCGGCGGCGGCGGCGGCGCGAGG ATTGCCAGTGATCCGGCGGCGACGCCGGGGTTCCGATTCTACCCGACGGAGGAGGAGCTG ATCGGCTTCTACCTCCGCCACCGCCTCGCCGGCACGAGGGCCGACGACGTCGCCCGCGTC ATCCCCGTCGTCGACGTCTACGGCTACCATCCTTCCCAGCTCGCCGCCATGGCCGGGGTG GCGACCGCGGGGGACAGGGAGCAGTGGTTCTTCTTCTGCCCGAGGGCGGAGCGGGAGCTC CACGGCGGCAGGCCGGCGCGGACCACGCCGTCGGGCTACTGGAAGGCCACGGGCTCGCCG TCCTTCGTCTTCTCCTCCTCCGCCGCCGCCGCCGCCAGGGTCATCGGCGTCAAGCGCACC ATGGTCTTCTACCAGGGCCGCGCCCCCTCCGGCACCTAGACCAGGTGGAAGATGAACGAG TACAAGGCCGTCGCCGCCGCCGCCGCCGACGACGACCACAACGCCGCTGGCGTGGCCGTG CAGCTGCCACCAATGGCGCCGCCGCCGTCGTCCTCCGCGTGCGTGCGGCTGAGGAACGAG CTGAGCGTGTGCCGGGTGTACGTCAGCACCGGCACGCTCCGATCCTTCGACCGCCGCCCC CTCGACGCGCCCCCGGTGATCAGCCACCATCAACCTCAGCTCCAGCAACAACAACGTCAG CTGCCATCGTCGGCAGCGGCGGCGGCGACGAACGGCAACCTCATCGCCCTCGCCGGCGGG TACGAGTGCTCACACGACAGCTCCGGTGGCTCGTCGGAAGATGCCGCCATCGACTGGAGC TCGCTGATTACCGCCGCCACCGATTCCGCTACCGCCGCCGTTGATTTCAGCTTCAACGAC GACATCGATTTCAGCCCTGCCGCTGTTGGCCCATGGGCGCCACAGCTTTGATTGATTGAT TATTTGTGCACACTGCATAATAACTGAATTACTAGTAATTAGTAGTAGTAAGTTTGATCA GTGCTTGCTAATTGCCATAGTGTTCTATGTTCAGGTCAACTCGATTGATTTATTACCTCC CAAACTCTCAATTCTGCTTGTCTTTAATTTTTCTTGAATAAATTCTGAACTATGGCCTGT TCTTTTCTTAAAAAAAA



consensusID : consensus_8621#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence
                              [TACCAAATCATTCAAAGTTTTCTTTCTTCAAGCCTTCAATCTTCTATATATATCTCCCTCCATGATCAACCAGCTATAGCTACCTCACTCCAACAATCGCCGACCACGATGGCCACCACGAGGAGCGGCGTCGGCGGCGCATCAGCGACCCATTTGCGACGCCGGGGTTCCGCTTCTACCCGANGGAGGAGGAGCTTCTCGGCTTCTACCTCCGGCACCGGCTCGCCGGCACGAGGNCCGACGTCGAGCGCNTCATTCCCGTCGTCGANGTCTACGGGGTACCAACCGTTCCAAGATTTGCCGGCCTTGGCCGGGGAAGCGGAGCNCGCGCAACAAAGGAGGAAGTGGTTCTTN]

[+] EMBL C26706               [TACCAAATCATTCAAAGTTTTCTTTCTTCAAGCCTTCAATCTTCTATATATATCTCCCTCCATGATCAACCAGCTATAGCTACCTCACTCCAACAATCGCCGACCACGATGGCCACCACGAGGAGCGGCGTCGGCGGCGCATCAGCGACCCATTTGCGACGCCGGGGTTCCGCTTCTACCCGANGGAGGAGGAGCTTCTCGGCTTCTACCTCCGGCACCGGCTCGCCGGCACGAGGNCCGACGTCGAGCGCNTCATTCCCGTCGTCGANGTCTACGGGGTACCAACCGTTCCAAGATTTGCCGGCCTTGGCCGGGGAAGCGGAGCNCGCGCAACAAAGGAGGAAGTGGTTCTTN]


>consensus_8621#2 TACCAAATCATTCAAAGTTTTCTTTCTTCAAGCCTTCAATCTTCTATATATATCTCCCTC CATGATCAACCAGCTATAGCTACCTCACTCCAACAATCGCCGACCACGATGGCCACCACG AGGAGCGGCGTCGGCGGCGCATCAGCGACCCATTTGCGACGCCGGGGTTCCGCTTCTACC CGANGGAGGAGGAGCTTCTCGGCTTCTACCTCCGGCACCGGCTCGCCGGCACGAGGNCCG ACGTCGAGCGCNTCATTCCCGTCGTCGANGTCTACGGGGTACCAACCGTTCCAAGATTTG CCGGCCTTGGCCGGGGAAGCGGAGCNCGCGCAACAAAGGAGGAAGTGGTTCTTN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8621#0      -TACAAGCTAGCTTTGCTTCTTCTTCTTCGTCTTCTTGTACCAAATC------ATTCAAA 53
consensus_8621#2      --------------------------------------TACCAAATC------ATTCAAA 16
consensus_8621#1      GAACTCGAGCCCCACACATATATATACACATCCCAAGATCACAAATCGAGTGTAATTAAA 60
                                                            *  ******      * * ***

consensus_8621#0      GTTTTCTTTCTTCAAGCCTTCAATCTTCTATATATATCTCCCTCCATGATCAACCAGCTA 113
consensus_8621#2      GTTTTCTTTCTTCAAGCCTTCAATCTTCTATATATATCTCCCTCCATGATCAACCAGCTA 76
consensus_8621#1      TTTGTGATTTGTGAACCTTCTTCAATTCTACCTAGCTAGCAATCTATTGAGAGGTGAATT 120
                       ** *  **  * ** * *      *****  **  *  *  ** **    *      * 

consensus_8621#0      TAGCTACCTCACTCCAACAAT-CGCCGACCACGATGGCCACCACGAGGAGCGGCGTCGGC 172
consensus_8621#2      TAGCTACCTCACTCCAACAAT-CGCCGACCACGATGGCCACCACGAGGAGCGGCGTCGGC 135
consensus_8621#1      GAAGTGCATGCATACAAGAATATATAGATGGTGATGAGCGGCGGCGGCGGCGGCGCGAGG 180
                       *  * * *   * *** ***     **    ****  *  *    *  ******   * 

consensus_8621#0      GGCGCCATCAGCGACCCATTTGCGACGCCGGGGTTCCGCTTCTACCCGACGGAGGAGGAG 232
consensus_8621#2      GGCGC-ATCAGCGACCCATTTGCGACGCCGGGGTTCCGCTTCTACCCGANGGAGGAGGAG 194
consensus_8621#1      ATTGC---CAGTGATCCGGCGGCGACGCCGGGGTTCCGATTCTACCCGACGGAGGAGGAG 237
                         **   *** ** **    ***************** ********** **********

consensus_8621#0      CTTCTCGGCTTCTACCTCCGCCACCGCCTCGCCGGCACGAGGCCCGACG---TCGAGCGC 289
consensus_8621#2      CTTCTCGGCTTCTACCTCCGGCACCGGCTCGCCGGCACGAGGNCCGACG---TCGAGCGC 251
consensus_8621#1      CTGATCGGCTTCTACCTCCGCCACCGCCTCGCCGGCACGAGGGCCGACGACGTCGCCCGC 297
                      **  **************** ***** *************** ******   ***  ***

consensus_8621#0      GTCATCCCCGTCGTCGACGTCTACGGC-TACCACCCGTCCCAG--CTCGCCG-CCCTGGC 345
consensus_8621#2      NTCATTCCCGTCGTCGANGTCTACGGGGTACCAACCGTTCCAAGATTTGCCGGCCTTGGC 311
consensus_8621#1      GTCATCCCCGTCGTCGACGTCTACGGC-TACCATCCTTCCCAG--CTCGCCG-CCATGGC 353
                       **** *********** ********  ***** ** * ***    * **** ** ****

consensus_8621#0      CGGGGAGGCG-AGCGCGCGCGACACGGA--GCAGTGGTTCTTCTTCTGCCCGCGCGCCGA 402
consensus_8621#2      CGGGGAAGCGGAGCNCGCGCAACAAAGGAGGAAGTGGTTCTTN----------------- 354
consensus_8621#1      CGGGGTGGCG-ACCGCGGGGGACAGGGA--GCAGTGGTTCTTCTTCTGCCCGAGGGCGGA 410
                      *****  *** * * ** *  ***  *   * **********                  

consensus_8621#0      GCGGGAGCTCCACGGCGGCCGGCCGGCGCGCACCACGCCGTCGGGGTACTGGAAGGCCAC 462
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      GCGGGAGCTCCACGGCGGCAGGCCGGCGCGGACCACGCCGTCGGGCTACTGGAAGGCCAC 470
                                                                                  

consensus_8621#0      GGGATCCCCGTCCTGCGTCATCTCCTCC---------GCCACAAACAGGGTCATCGGCGT 513
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      GGGCTCGCCGTCCTTCGTCTTCTCCTCCTCCGCCGCCGCCGCCGCCAGGGTCATCGGCGT 530
                                                                                  

consensus_8621#0      CAAGCGCACCATGGTGTTCTACCAGGGCCGCGCCCCCACCGGCACCAAGACCCGCTGGAA 573
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      CAAGCGCACCATGGTCTTCTACCAGGGCCGCGCCCCCTCCGGCACCTAGACCAGGTGGAA 590
                                                                                  

consensus_8621#0      GATGAACGAGTACAAGGCCGTCGCCGACGACGCCGACGCCGCCGCCGCCGCCATGCTCCA 633
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      GATGAACGAGTACAAGGCCGTCGCCGCCGCCGCCGCCGACGACGACCACAACGCCGCTGG 650
                                                                                  

consensus_8621#0      CCCAATGGCGCCTCCCAGGCTGAGGAACGAGCTGGGAGTGTGCCGGGTGTACAT-CAGCA 692
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      CGTGGCCGTGCAGCTGCCACCAATGGCGCCGCCGCCGTCGTCCTCCGCGTGCGTGCGGCT 710
                                                                                  

consensus_8621#0      CGGGCACGCTGAGATCGTTCGACCGCCGGCCGCTCGATAATCAAGCGGCGGCGCCCACCA 752
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      GAGGAACGAGCTGAGCGTGTGCCGGGTGTACG-TCAGCACCGGCACGCTCCGATCCTTCG 769
                                                                                  

consensus_8621#0      AGCAACAGGTGATGCCATCTTTGACGGCGG-CGGCGGCGGTGAACACGAACCTCTGCGGC 811
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ACCGCCGCCCCCTCGACGCGCCCCCGGTGATCAGCCACCATCAACCTCAGCTCCAGCAAC 829
                                                                                  

consensus_8621#0      GGCGGCGGCGGC-GTCGTGTTCGCCGGTGCACAAGGAGACAGCTCCCGCGACTGCAGCTC 870
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      AACAACGTCAGCTGCCATCGTCGGCAGCGGCGGCGGCGACGAACGGCAACCTCATCGCCC 889
                                                                                  

consensus_8621#0      GTCGTCGGGGTCGCGAGAACTCGC-CGGCGGCGCCGATGG---GTCTGAAGACGACGCCA 926
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      TCGCCGGCGGGTACGAGTGCTCACACGACAGCTCCGGTGGCTCGTCGGAAGATGCCGCCA 949
                                                                                  

consensus_8621#0      TCGACTGGAACTCGCTCATCAGTAGCGCCACTG---------------CTGATGATCTCG 971
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      TCGACTGGAGCTCGCTGATTACCGCCGCCACCGATTCCGCTACCGCCGCCGTTGATTTCA 1009
                                                                                  

consensus_8621#0      GCTTCAACACCGTCGTTGGTTTTGATCCTAGCATCGTCGGATCATGGCCACAAGTCTAGT 1031
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      GCTTCAACGACGACATCGATTTCAGCCCTGCCGCTGTTGGCCCATGGGCGCCACAGCTTT 1069
                                                                                  

consensus_8621#0      GCTTGATTACGCGTA-ATATAAAATTAATCGAGTTTAGTGATCAGTTAGTTTTTTGTTTT 1090
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      GATTGATTGATTATTTGTGCACACTGCATAATAACTGAATTACTAGTAATTAGTAGTAGT 1129
                                                                                  

consensus_8621#0      T--TTTGCAAGAAGTTCAAAAATTATTGCTGTGTGTTTTGCACTGAGTAGCAAAGATGGG 1148
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      AAGTTTGATCAGTGCTTGCTAATTGCCATAGTGTTCTATGTTCAGGTCAACTC-GATTGA 1188
                                                                                  

consensus_8621#0      AGGATTAGAAGATGAATCGATTAGTTTGCAAATCAGGTGAATTAATTAGAGTAATTAACA 1208
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      TTTATTACCTCCCAAACTCTCAATTCTGCTTGTCTTTAATTTTTCTTGAATAAATTCTGA 1248
                                                                                  

consensus_8621#0      TCTGTAGTAATAGTAAGTAGAAAATCAAAATGAGAAGTTGTAGCAGAAAGTGTATACTAC 1268
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ACTATGGCCTGTTCTTTTCTTAAAAAAAA------------------------------- 1277
                                                                                  

consensus_8621#0      CACAAATCCGTTCTTAGTCCGACTCCGAATTAATCCCAGACGGAAGATCGATCGAGACCG 1328
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      ATTCGGAGATGGAGCCGATTTTGCTTGGAAATCAATGGAGAGGTGAAATGGGATCGGATT 1388
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      CATGGGCGGCTACATAAGCAGGAGTCGAGAGGCCGCACCAGCTCATCATCATCATCATCA 1448
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      TCATCTCATTCCCCGCGGTTCGATCCTCCTCGCGCTCTCGTCGTCGTCGTCGTCATCTCC 1508
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      GGTTGATCGATCACTTCACTTCAAGTCGATGTCGGCCATGGCGGCTCTCCCTGTGCTGCT 1568
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      CCCGACCCCGCCGAGGAGCAAGATGCTGCCGCTGCTCCCGACGCCGTGCCTCGTCATCCT 1628
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      CCCCGCCAACTTCGCCACGTCGGTGGCCTCCAACGCGCCCAAGCCCGGCCGCGCCGACGC 1688
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      CGCCGACAGGTGGGACACGCACAAGAAACCCACCAGCTCGTCGTCGTCGTCAAGCTCCAG 1748
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      CACCGGGAGCGCCAGCCGCGCCGCCGCCTGCGAGCGCAAAGAACCCGGCAGCCCAGCGTC 1808
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      GTCGTCGTCAAGCAGCGGCGGGAAGCCCGGCCGAGCCGACTCCTGCGAGCGCTGGGACAC 1868
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      GAACAAGGCCAAGAACCAGATCATCAGCAGCGGCCGCCTCACGCCGGCGTCGTCGTCGTC 1928
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      GACGAACGCGCGCTGGGACATGAACAAGGTCAAGAACACGGCGCCGCCGTCGAACAGCAA 1988
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      CAAGCGGCCGGTGAGCCGCGGGTCCGCCTCGGCCGAGCGCTGGGACATCAGCAAGAAGCA 2048
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      TCGCTCGCAGGACGCCGCCGCCGCCGCTCTCGGCTCGGCGAGTGATCGGAAGTTGACGAC 2108
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      GGTGGCAAAGCCGCAGCAGCCGCTGTTCTCTGGGCCGGCGTTCCTGACCTCGCCGGAGCC 2168
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      AAGCATGCTTCCCATGCCCACCTTCTTGATGGCCCGATAGCTTCTGCTTGTGCATTTCAA 2228
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      CTTCAGATGAATCGGACTGTAGTTAGGATGGGATTTGATGAAGCATGTTATTCTTTGTGG 2288
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      GTCTGTTTGTGATCAATTGAATT 2311
consensus_8621#2      -----------------------
consensus_8621#1      -----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)