Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8624 cluster # 8624       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8624#0 length = 2924 sequences # 4  
consensus_8624#1 length = 556 sequences # 1  

consensusID : consensus_8624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2924
fasta sequence
                              [CATTCCTCCGCTTCCTCATTTCCTCCCACCGAAAAAAAGCTAGGGTTTGGAGCTGTGCGCCGCTGCTCGTCGCCGCCCCCATCCTCCGTCGCGGGGCGTCGGCACCGGCTCCCTCCTTTCCGTCGGCTGGCCGCCAAGAAAATCTAGGGTTTGGGCTGTGCGAGGCAGCGCCGGGGAAGCAGGGAAGCGGCGAGGCGGCAGGCAGGCAGGCAGGGGCAAGGCCAGATCCGCCGCGCGCAGCGGCCTCGTCGGGCCGGTGGCAACGAGGGCTCGTTGGCTCGTCAGATCCAGTGCCCTTTTTCTCCCTCCCTCCCCCTCCTCGATTTGGTTTGCGGGGGGTGCTCGCCAAAAGCTTCGGGATTGGAGTATGATTTTGAGGATCTGAATAAAAGAAGTCAGTAAAATCATTTGTCTCTCACGATGGAGAAGATACAATCTGATTGCCCTTATCCTGGATGTTTCTTCTGTGTTATGAAAGAGGCAAACCCTAGTAAACGAAGAGCAAGTGTACTGAAGTTCTTTAGGGAACTTCCTTCTCAAGATGATGATGGTCAAGTTCTCCCTATTAGTGGTCTTTGGAATACTGCGATGGCACATCCAAATGACCCTGAATTCATCAACTTGGGGATATTTGAATGCATGTCAGCTCTTATATGGAAGGGACTGAAAAACAGGCGTTGGCTTTCTCATGATCAGAATATTTACATCCCATATTATGCAGCACATATAATTGGATCCTACACAATGAATATGGAGGAGTTTGCGGAACGTGCTGTTCGTGCTGGTGTAATACCTCCATTGGTTGAACTCTTACGAGGCAGGCTAACTT-GGGTAGAGCAAA-GGGTTGCTGTTAGAGCTTTGGGGCATTTGGCTACATATCCCAGTACATTTCCTGCAGTTGCTGACCATGGAGAAGTACTTGAACTTGCTATTCAACTTGCTTCAAGTTCTCTAGAGATTGTGTATTCTCATTTTTACCAGTTTGTGGACCGAAGGATTGGCTACCACTGTGACCTTCTCACACGAGGCATGGGTGGTGTGGAAATGGAATCTCGCAAAGCTGAGGAATGGGCAAGCCAACTTCAGTGCTGGTCTTTGCAACTCATTAACTGCTTCGCATTTAAGTCTGAATTTCTCCATGATATTTGCAAGGCTGATTTTCTAGTCAAGTTACCTGGAATGTGGGGTGGACTCGTAAATGAGAACTCACCTGCTGGTGTTGGTTTGCTAAGAACTATCTGCCAGAGCAAGCTTGGCCGAGGCCATGTTGCTAATATTCCTAGTGTTGTTGAAGCTCTCTGCAACATTGCCCGTTCTTCAGATGACTGGCAATACATGGCTGTTGATTGTTTACTTTGGTTGGTGCAGGATTCAAATACATGTCATAAGGTAATAGATAGAGTTGCCTCAACACTGATAGATTTAGCAAATATCTCAATGCTCGGTGATTATAAAAAACTTGGTGACACCATTGTCACAGTGCTCCAAGAATGTATGCAACAATATGCAAATTCACGGAATTCAATTAGTACTCACACCAAAGAACAAATTGATGAACTCTTGAGTTCCAAGCAGAGTTTTAAATTGGAGAAGAATATGCCAAAGGAGGATCTTCATATAAAACAAGCAGCAGCATTGGTTGTTAAGTTGGAAGGCAATTCACTTTTCTCTTCAGGGAACATAGCAGGAGCTGCAGCAAAGTACTCTGAAGCACTTGCGCTGTGTCCAATGAAGTCTAAGAAAGAAAGAGTGGTGCTTTATAGTAATCGAGCTCAGTGTTATCTACTCCTGCAGCAGCCATTGGCTGCCATAAGTGATGCTACCCGTGCATTGTGCCTTCATAGTCCTTTGAATCGCCACGCAAAAAGCTTGTGGAGAAGGGCTCAAGCATACGATATGCTTGGTTTAGCGAAAGAGAGCCTGTTGGATGCAATTCTCTTTATAAATGAATGCTCTCAGTCGAATGATCCTGACCTGTCATTAAAGCAAAATAAAGTTCCTGATTATGCTGAGCGTTTGGTGAAGAAGCAGATGCGCACAGCTTGGTTATTCAGGGAAGCAGCTTTGAAACATGGGGGAATCCATTGCGAGGGAGAAGCTAGTGATGCTTTTGGTCAAGAGGCAGATGACTCTGAGTGGGAAACAGCCAGTGAAAGTGATGCTGAGAATGATGCAACAGGAGAGGCAGATGATGAAACTGAATGGAAGAACGATAACCAAGTATGAGAAAAGCTGAGAACCAGGTTTCCTTGCCATTCAGGACGATTGTTGGTGTTGCTTATGTTAGTAGAAACAATGGAACCACCTGCTTGTCTTCTGTACGAGTAAACTGAAACAAAGTTGTGAACTGGACGGAGCCAGCTTACAGAAAGCCTTGCAAGAATGGCTTTCAAAAGTGACAAATCTGGTGCCACTGTATTTATCCTATTGAGAACGAGGCTGAATTTTTCAATGCCATTTATCATCTCATCACCATGTTGGATTTGTCAGGGTTGTGCTTGTGATTCGTTCGATGTGTTCTATTCGGGGAGTAGTTTCATGTTTGGTGTTGTAAAATGTGTTTCCACCGATTTTTCAGCTTTTGAATGGACAAAACTGTGCCTTCTTTTTTTCCTCCTTTCTTGATGTGTGAAGTTTTGCCAAGAGGCAAACTCTGGCACTGTTTTCTATATTCTGCAGTATTGAATGTACATTTTCTTCAGGGTGGATGCTGTGTTTTCTTATTGTAAAACTCTATATTGGTTGAGGATTAACTGGTTTCTAGTTTATGTGTCCGTAGGTTGAGTTTACTATGTGCTCAGTGGTTGTCTGCCTTTGTCTGGGTGCTCAGATAGCGACCTGAAATGTAAGGCTTGAGAACTTGAGTGTGGTGCTCAAACCATATGTAAATATTGTTCTGCCTATTCTTAATGTTCATTTAGTAC]

[+] EMBL AK103376             [CATTCCTCCGCTTCCTCATTTCCTCCCACCGAAAAAAAGCTAGGGTTTGGAGCTGTGCGCCGCTGCTCGTCGCCGCCCCCATCCTCCGTCGCGGGGCGTCGGCACCGGCTCCCTCCTTTCCGTCGGCTGGCCGCCAAGAAAATCTAGGGTTTGGGCTGTGCGAGGCAGCGCCGGGGAAGCAGGGAAGCGGCGAGGCGGCAGGCAGGCAGGCAGGGGCAAGGCCAGATCCGCCGCGCGCAGCGGCCTCGTCGGGCCGGTGGCAACGAGGGCTCGTTGGCTCGTCAGATCCAGTGCCCTTTTTCTCCCTCCCTCCCCCTCCTCGATTTGGTTTGCGGGGGGTGCTCGCCAAAAGCTTCGGGATTGGAGTATGATTTTGAGGATCTGAATAAAAGAAGTCAGTAAAATCATTTGTCTCTCACGATGGAGAAGATACAATCTGATTGCCCTTATCCTGGATGTTTCTTCTGTGTTATGAAAGAGGCAAACCCTAGTAAACGAAGAGCAAGTGTACTGAAGTTCTTTAGGGAACTTCCTTCTCAAGATGATGATGGTCAAGTTCTCCCTATTAGTGGTCTTTGGAATACTGCGATGGCACATCCAAATGACCCTGAATTCATCAACTTGGGGATATTTGAATGCATGTCAGCTCTTATATGGAAGGGACTGAAAAACAGGCGTTGGCTTTCTCATGATCAGAATATTTACATCCCATATTATGCAGCACATATAATTGGATCCTACACAATGAATATGGAGGAGTTTGCGGAACGTGCTGTTCGTGCTGGTGTAATACCTCCATTGGTTGAACTCTTACGAGGCAGGCTAACTT GGGTAGAGCAAA GGGTTGCTGTTAGAGCTTTGGGGCATTTGGCTACATATCCCAGTACATTTCCTGCAGTTGCTGACCATGGAGAAGTACTTGAACTTGCTATTCAACTTGCTTCAAGTTCTCTAGAGATTGTGTATTCTCATTTTTACCAGTTTGTGGACCGAAGGATTGGCTACCACTGTGACCTTCTCACACGAGGCATGGGTGGTGTGGAAATGGAATCTCGCAAAGCTGAGGAATGGGCAAGCCAACTTCAGTGCTGGTCTTTGCAACTCATTAACTGCTTCGCATTTAAGTCTGAATTTCTCCATGATATTTGCAAGGCTGATTTTCTAGTCAAGTTACCTGGAATGTGGGGTGGACTCGTAAATGAGAACTCACCTGCTGGTGTTGGTTTGCTAAGAACTATCTGCCAGAGCAAGCTTGGCCGAGGCCATGTTGCTAATATTCCTAGTGTTGTTGAAGCTCTCTGCAACATTGCCCGTTCTTCAGATGACTGGCAATACATGGCTGTTGATTGTTTACTTTGGTTGGTGCAGGATTCAAATACATGTCATAAGGTAATAGATAGAGTTGCCTCAACACTGATAGATTTAGCAAATATCTCAATGCTCGGTGATTATAAAAAACTTGGTGACACCATTGTCACAGTGCTCCAAGAATGTATGCAACAATATGCAAATTCACGGAATTCAATTAGTACTCACACCAAAGAACAAATTGATGAACTCTTGAGTTCCAAGCAGAGTTTTAAATTGGAGAAGAATATGCCAAAGGAGGATCTTCATATAAAACAAGCAGCAGCATTGGTTGTTAAGTTGGAAGGCAATTCACTTTTCTCTTCAGGGAACATAGCAGGAGCTGCAGCAAAGTACTCTGAAGCACTTGCGCTGTGTCCAATGAAGTCTAAGAAAGAAAGAGTGGTGCTTTATAGTAATCGAGCTCAGTGTTATCTACTCCTGCAGCAGCCATTGGCTGCCATAAGTGATGCTACCCGTGCATTGTGCCTTCATAGTCCTTTGAATCGTCACGCAAAAAGCTTGTGGAGAAGGGCTCAAGCATACGATATGCTTGGTTTAGCGAAAGAGAGCCTGTTGGATGCAATTCTCTTTATAAATGAATGCTCTCAGTCGAATGATCCTGACCTGTCATTAAAGCAAAATAAAGTTCCTGATTATGCTGAGCGTTTGGTGAAGAAGCAGATGCGCACAGCTTGGTTATTCAGGGAAGCAGCTTTGAAACATGGGGGAATCCATTGCGAGGGAGAAGCTAGTGATGCTTTTGGTCAAGAGGCAGATGACTCTGAGTGGGAAACAGCCAGTGAAAGTGATGCTGAGAATGATGCAACAGGAGAGGCAGATGATGAAACTGAATGGAAGAACGATAACCAAGTATGAGAAAAGCTGAGAACCAGGTTTCCTTGCCATTCAGGACGATTGTTGGTGTTGCTTATGTTAGTAGAAACAATGGAACCACCTGCTTGTCTTCTGTACGAGTAAACTGAAACAAAGTTGTGAACTGGACGGAGCCAGCTTACAGAAAGCCTTGCAAGAATGGCTTTCAAAAGTGACAAATCTGGTGCCACTGTATTTATCCTATTGAGAACGAGGCTGAATTTTTCAATGCCATTTATCATCTCATCACCATGTTGGATTTGTCAGGGTTGTGCTTGTGATTCGTTCGATGTGTTCTATTCGGGGAGTAGTTTCATGTTTGGTGTTGTAAAATGTGTTTCCACCGATTTTTCAGCTTTTGAATGGACAAAACTGTGCCTTCTTTTTTTCCTCCTTTCTTGATGTGTGAAGTTTTGCCAAGAGGCAAACTCTGGCACTGTTTTCTATATTCTGCAGTATTGAATGTACATTTTCTTCAGGGTGGATGCTGTGTTTTCTTATTGTAAAACTCTATATTGGTTGAGGATTAACTGGTTTCTAGTTTATGTGTCCGTAGGTTGAGTTTACTATGTGCTCAGTGGTTGTCTGCCTTTGTCTGGGTGCTCAGATAGCGACCTGAAATGTAAGGCTTGAGAACTTGAGTGTGGTGCTCAAACCATATGTAAATATTGTTCTGCCTATTCTTAATGTTCATTTAGTAC]
[+] EMBL AU055799             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATGATGATGGTCAAGTTCTCCCTATTAGTGGTCTTTGGAATACTGCGATGGCACATCCAAATGACCCTGAATTCATCAACTTGGGGATATTTGAATGCATGTCAGCTCTTATATGGAAGGGACTGAAAAACAGGCGTTGGCTTTCTCATGATCAGAATATTTACATCCCATATTATGCAGCACATATAATTGGATCCTACACAATGAATATGGAGGAGTTTGCGGAACGTGCTGTTCGTGCTGGTGTAATACCTCCATTGGTTGAACTCTTACGAGGCAGGCTAACTTGGGGTAGAGCAAAGGGGTTGCTGTTAGAGCTTTGGGGCATTTGGCTACATATCCCAGTACATTTCCTGCAGTTGCTGACCATGGAGAAGTACTTGAACTTGCTATTCCACTTGCTTCAAG TCCCTAGAGA TGNGGAATCCCA TTTTACCAGTTg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA764753             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACCTGCTGGTGTTGGTTTGCTAAGAACTATCTGCCAGAGCAAGCTTGGCCGAGGCCATGTTGCTAATATTCCTAGTGTTGTTGAAGCTCTCTGCAACATTGCCCGTTCTTCAGATGACTGGCAATACATGGCTGTTGATTGTTTACTTTGGTTGGTGCAGGATTCAAATACATGTCATAAGGTAATAGATAGAGTTGCCTCAACACTGATAGATTTAGCAAATATCTCAATGCTCGGTGATTATAAAAAACTTGGTGACACCATTGTCACAGTGCTCCAAGAATGTATGCAACAATATGCAAATTCACGGAATTCAATTAGTACTCACACCAAAGAACAAATTGATGAACTCTTGAGTTCCAAGCAGAGTTTTAAATTGGAGAAGAATATGCCAAAGGAGGATCTTCATATAAAACAAGCAGCAGCATTGGTTGTTAAGTTGGAAGGCAATTCACTTTTCTCTTCAGGGAACATAGCAGGAGCTGCAGCAAAGTACTCTGAAGCACTTGCGCTGTGTCCAATGAAGTCTAAGAAAGAAAGAGTGGTGCTTTATAGTAATCGAGCTCAGTGTTATCTACTCCTGCAGCAGCCATTGGCTGCCATAAGTGATGCTACCCGTGCATTGTGCCTTCATAGTCCTTTGAATCGCCACGCAAAAAGCTTGTGGAGAANGGCTCAAGCATACGATATGCTTGGTTTAGCGAAAGAGAGCCTGNTGGATGCAATTCTCTTTATAAATGAATGCTCTCAATCGAATGATCCTGACCTGTCATTNAAGCAAAATAAAGNTCCTGATTATGCTGAGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK058230             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGATTCAAATACATGTCATAAGGTAATAGATAGAGTTGCCTCAACACTGATAGATTTAGCAAATATCTCAATGCTCGGTGATTATAAAAAACTTGGTGACACCATTGTCACAGTGCTCCAAGAATGTATGCAACAATATGCAAATTCACGGAATTCAATTAGTACTCACACCAAAGAACAAATTGATGAACTCTTGAGTTCCAAGCAGAGTTTTAAATTGGAGAAGAATATGCCAAAGGAGGATCTTCATATAAAACAAGCAGCAGCATTGGTTGTTAAGTTGGAAGGCAATTCACTTTTCTCTTCAGGGAACATAGCAGGAGCTGCAGCAAAGTACTCTGAAGCACTTGCGCTGTGTCCAATGAAGTCTAAGAAAGAAAGAGTGGTGCTTTATAGTAATCGAGCTCAGTGTTATCTACTCCTGCAGCAGCCATTGGCTGCCATAAGTGATGCTACCCGTGCATTGTGCCTTCATAGTCCTTTGAATCGCCACGCAAAAAGCTTGTGGAGAAGGGCTCAAGCATACGATATGCTTGGTTTAGCGAAAGAGAGCCTGTTGGATGCAATTCTCTTTATAAATGAATGCTCTCAGTCGAATGATCCTGACCTGTCATTAAAGCAAAATAAAGTTCCTGATTATGCTGAGCGTTTGGTGAAGAAGCAGATGCGCACAGCTTGGTTATTCAGGGAAGCAGCTTTGAAACATGGGGGAATCCATTGCGAGGGAGAAGCTAGTGATGCTTTTGGTCAAGAGGCAGATGACTCTGAGTGGGAAACAGCCAGTGAAAGTGATGCTGAGAATGATGCAACAGGAGAGGCAGATGATGAAACTGAATGGAAGAACGATAACCAAGTATGAGAAAAGCTGAGAACCAGGTTTCCTTGCCATTCAGGACGATTGTTGGTGTTGCTTATGTTAGTAGAAACAATGGAACCACCTGCTTGTCTTCTGTACGAGTAAACTGAAACAAAGTTGTAAACTGGACGGAGCCAGCTTACAGAAAGCCTTGCAAGAATGGCTTTCAAAAGTGACAAATCTGGTGCCACTGTATTTATCCTATTGAGAACGAGGCTGAATTTTTCAATGCCATTTATCATCTCATCACCATGTTGGATTTGTCAGGGTTGTGCTTGTGATTCGTTCGATGTGTTCTATTCGGGGAGTAGTTTCATGTTTGGTGTTGTAAAATGTGTTTCCACCGATTTTTCAGCTTTTGAATGGACAAAACTGTGCCTTCTTTTTTTCCTCCTTTCTTGATGTGTGAAGTTTTGCCAAGAGGCAAACTCTGGCACTGTTTTCTATATTCTGCAGTATTGAATGTACATTTTCTTCAGGGTGGATGCTGTGTTTTCTTATTGTAAAACTCTATATTGGTTGAGGATTAACTGGTTTCTAGTTTATGTGTCCGTA                                                                                                                                                  ]


>consensus_8624#0 CATTCCTCCGCTTCCTCATTTCCTCCCACCGAAAAAAAGCTAGGGTTTGGAGCTGTGCGC CGCTGCTCGTCGCCGCCCCCATCCTCCGTCGCGGGGCGTCGGCACCGGCTCCCTCCTTTC CGTCGGCTGGCCGCCAAGAAAATCTAGGGTTTGGGCTGTGCGAGGCAGCGCCGGGGAAGC AGGGAAGCGGCGAGGCGGCAGGCAGGCAGGCAGGGGCAAGGCCAGATCCGCCGCGCGCAG CGGCCTCGTCGGGCCGGTGGCAACGAGGGCTCGTTGGCTCGTCAGATCCAGTGCCCTTTT TCTCCCTCCCTCCCCCTCCTCGATTTGGTTTGCGGGGGGTGCTCGCCAAAAGCTTCGGGA TTGGAGTATGATTTTGAGGATCTGAATAAAAGAAGTCAGTAAAATCATTTGTCTCTCACG ATGGAGAAGATACAATCTGATTGCCCTTATCCTGGATGTTTCTTCTGTGTTATGAAAGAG GCAAACCCTAGTAAACGAAGAGCAAGTGTACTGAAGTTCTTTAGGGAACTTCCTTCTCAA GATGATGATGGTCAAGTTCTCCCTATTAGTGGTCTTTGGAATACTGCGATGGCACATCCA AATGACCCTGAATTCATCAACTTGGGGATATTTGAATGCATGTCAGCTCTTATATGGAAG GGACTGAAAAACAGGCGTTGGCTTTCTCATGATCAGAATATTTACATCCCATATTATGCA GCACATATAATTGGATCCTACACAATGAATATGGAGGAGTTTGCGGAACGTGCTGTTCGT GCTGGTGTAATACCTCCATTGGTTGAACTCTTACGAGGCAGGCTAACTTGGGTAGAGCAA AGGGTTGCTGTTAGAGCTTTGGGGCATTTGGCTACATATCCCAGTACATTTCCTGCAGTT GCTGACCATGGAGAAGTACTTGAACTTGCTATTCAACTTGCTTCAAGTTCTCTAGAGATT GTGTATTCTCATTTTTACCAGTTTGTGGACCGAAGGATTGGCTACCACTGTGACCTTCTC ACACGAGGCATGGGTGGTGTGGAAATGGAATCTCGCAAAGCTGAGGAATGGGCAAGCCAA CTTCAGTGCTGGTCTTTGCAACTCATTAACTGCTTCGCATTTAAGTCTGAATTTCTCCAT GATATTTGCAAGGCTGATTTTCTAGTCAAGTTACCTGGAATGTGGGGTGGACTCGTAAAT GAGAACTCACCTGCTGGTGTTGGTTTGCTAAGAACTATCTGCCAGAGCAAGCTTGGCCGA GGCCATGTTGCTAATATTCCTAGTGTTGTTGAAGCTCTCTGCAACATTGCCCGTTCTTCA GATGACTGGCAATACATGGCTGTTGATTGTTTACTTTGGTTGGTGCAGGATTCAAATACA TGTCATAAGGTAATAGATAGAGTTGCCTCAACACTGATAGATTTAGCAAATATCTCAATG CTCGGTGATTATAAAAAACTTGGTGACACCATTGTCACAGTGCTCCAAGAATGTATGCAA CAATATGCAAATTCACGGAATTCAATTAGTACTCACACCAAAGAACAAATTGATGAACTC TTGAGTTCCAAGCAGAGTTTTAAATTGGAGAAGAATATGCCAAAGGAGGATCTTCATATA AAACAAGCAGCAGCATTGGTTGTTAAGTTGGAAGGCAATTCACTTTTCTCTTCAGGGAAC ATAGCAGGAGCTGCAGCAAAGTACTCTGAAGCACTTGCGCTGTGTCCAATGAAGTCTAAG AAAGAAAGAGTGGTGCTTTATAGTAATCGAGCTCAGTGTTATCTACTCCTGCAGCAGCCA TTGGCTGCCATAAGTGATGCTACCCGTGCATTGTGCCTTCATAGTCCTTTGAATCGCCAC GCAAAAAGCTTGTGGAGAAGGGCTCAAGCATACGATATGCTTGGTTTAGCGAAAGAGAGC CTGTTGGATGCAATTCTCTTTATAAATGAATGCTCTCAGTCGAATGATCCTGACCTGTCA TTAAAGCAAAATAAAGTTCCTGATTATGCTGAGCGTTTGGTGAAGAAGCAGATGCGCACA GCTTGGTTATTCAGGGAAGCAGCTTTGAAACATGGGGGAATCCATTGCGAGGGAGAAGCT AGTGATGCTTTTGGTCAAGAGGCAGATGACTCTGAGTGGGAAACAGCCAGTGAAAGTGAT GCTGAGAATGATGCAACAGGAGAGGCAGATGATGAAACTGAATGGAAGAACGATAACCAA GTATGAGAAAAGCTGAGAACCAGGTTTCCTTGCCATTCAGGACGATTGTTGGTGTTGCTT ATGTTAGTAGAAACAATGGAACCACCTGCTTGTCTTCTGTACGAGTAAACTGAAACAAAG TTGTGAACTGGACGGAGCCAGCTTACAGAAAGCCTTGCAAGAATGGCTTTCAAAAGTGAC AAATCTGGTGCCACTGTATTTATCCTATTGAGAACGAGGCTGAATTTTTCAATGCCATTT ATCATCTCATCACCATGTTGGATTTGTCAGGGTTGTGCTTGTGATTCGTTCGATGTGTTC TATTCGGGGAGTAGTTTCATGTTTGGTGTTGTAAAATGTGTTTCCACCGATTTTTCAGCT TTTGAATGGACAAAACTGTGCCTTCTTTTTTTCCTCCTTTCTTGATGTGTGAAGTTTTGC CAAGAGGCAAACTCTGGCACTGTTTTCTATATTCTGCAGTATTGAATGTACATTTTCTTC AGGGTGGATGCTGTGTTTTCTTATTGTAAAACTCTATATTGGTTGAGGATTAACTGGTTT CTAGTTTATGTGTCCGTAGGTTGAGTTTACTATGTGCTCAGTGGTTGTCTGCCTTTGTCT GGGTGCTCAGATAGCGACCTGAAATGTAAGGCTTGAGAACTTGAGTGTGGTGCTCAAACC ATATGTAAATATTGTTCTGCCTATTCTTAATGTTCATTTAGTAC



consensusID : consensus_8624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence
                              [AGACCCAGGTTTCCCTTGCCCATTCCAGGACGATTGTTGGTGTTGCTTATGGTTAGTAGAAACAATGGAACCACCTGCTTGTCTTCTGTACGAGTAAACTGAAACAAAGTTGTGAACTGGACGGAGCCAGCTTACAGAAAGCCTTGCAAGAATGGCTTTCCAAAAGTGACAAATCTGGTGCCACTGTATTTATCCTATTGAGAACGAGGCTGAATTTTTCAATGCCATTTATCATCTCATCACCATGTTGGATTTGTCCAGGGTTGTGCTTGTGATTCGTTCGATGTGTTCTATTCGGGGAGTAGTTTCATGTTTGGTGTTGTAAAATGTGTTTCCACCGATTTTTCAGCTTTTGAATGGACAAAACTGTGCCTTCTTTTTTTCCTCCTTTCTTGATGTGTGAAGTTTTGCCAAGAGGCAAACTCTGGCACTGTTTTCTATATTCTGCAGTATTGAATGTACATTTTCTTCAGGGTGGATGCTGTGTTTTCTTATTGTAAAACTCTATATTGGTTGAGGATTAACTGGTTTCTAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU055800             [AGACCCAGGTTTCCCTTGCCCATTCCAGGACGATTGTTGGTGTTGCTTATGGTTAGTAGAAACAATGGAACCACCTGCTTGTCTTCTGTACGAGTAAACTGAAACAAAGTTGTGAACTGGACGGAGCCAGCTTACAGAAAGCCTTGCAAGAATGGCTTTCCAAAAGTGACAAATCTGGTGCCACTGTATTTATCCTATTGAGAACGAGGCTGAATTTTTCAATGCCATTTATCATCTCATCACCATGTTGGATTTGTCCAGGGTTGTGCTTGTGATTCGTTCGATGTGTTCTATTCGGGGAGTAGTTTCATGTTTGGTGTTGTAAAATGTGTTTCCACCGATTTTTCAGCTTTTGAATGGACAAAACTGTGCCTTCTTTTTTTCCTCCTTTCTTGATGTGTGAAGTTTTGCCAAGAGGCAAACTCTGGCACTGTTTTCTATATTCTGCAGTATTGAATGTACATTTTCTTCAGGGTGGATGCTGTGTTTTCTTATTGTAAAACTCTATATTGGTTGAGGATTAACTGGTTTCTAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8624#1 AGACCCAGGTTTCCCTTGCCCATTCCAGGACGATTGTTGGTGTTGCTTATGGTTAGTAGA AACAATGGAACCACCTGCTTGTCTTCTGTACGAGTAAACTGAAACAAAGTTGTGAACTGG ACGGAGCCAGCTTACAGAAAGCCTTGCAAGAATGGCTTTCCAAAAGTGACAAATCTGGTG CCACTGTATTTATCCTATTGAGAACGAGGCTGAATTTTTCAATGCCATTTATCATCTCAT CACCATGTTGGATTTGTCCAGGGTTGTGCTTGTGATTCGTTCGATGTGTTCTATTCGGGG AGTAGTTTCATGTTTGGTGTTGTAAAATGTGTTTCCACCGATTTTTCAGCTTTTGAATGG ACAAAACTGTGCCTTCTTTTTTTCCTCCTTTCTTGATGTGTGAAGTTTTGCCAAGAGGCA AACTCTGGCACTGTTTTCTATATTCTGCAGTATTGAATGTACATTTTCTTCAGGGTGGAT GCTGTGTTTTCTTATTGTAAAACTCTATATTGGTTGAGGATTAACTGGTTTCTAAAAAAA AAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8624#0      CATTCCTCCGCTTCCTCATTTCCTCCCACCGAAAAAAAGCTAGGGTTTGGAGCTGTGCGC 60
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      CGCTGCTCGTCGCCGCCCCCATCCTCCGTCGCGGGGCGTCGGCACCGGCTCCCTCCTTTC 120
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      CGTCGGCTGGCCGCCAAGAAAATCTAGGGTTTGGGCTGTGCGAGGCAGCGCCGGGGAAGC 180
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      AGGGAAGCGGCGAGGCGGCAGGCAGGCAGGCAGGGGCAAGGCCAGATCCGCCGCGCGCAG 240
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      CGGCCTCGTCGGGCCGGTGGCAACGAGGGCTCGTTGGCTCGTCAGATCCAGTGCCCTTTT 300
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      TCTCCCTCCCTCCCCCTCCTCGATTTGGTTTGCGGGGGGTGCTCGCCAAAAGCTTCGGGA 360
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      TTGGAGTATGATTTTGAGGATCTGAATAAAAGAAGTCAGTAAAATCATTTGTCTCTCACG 420
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      ATGGAGAAGATACAATCTGATTGCCCTTATCCTGGATGTTTCTTCTGTGTTATGAAAGAG 480
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GCAAACCCTAGTAAACGAAGAGCAAGTGTACTGAAGTTCTTTAGGGAACTTCCTTCTCAA 540
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GATGATGATGGTCAAGTTCTCCCTATTAGTGGTCTTTGGAATACTGCGATGGCACATCCA 600
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      AATGACCCTGAATTCATCAACTTGGGGATATTTGAATGCATGTCAGCTCTTATATGGAAG 660
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GGACTGAAAAACAGGCGTTGGCTTTCTCATGATCAGAATATTTACATCCCATATTATGCA 720
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GCACATATAATTGGATCCTACACAATGAATATGGAGGAGTTTGCGGAACGTGCTGTTCGT 780
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GCTGGTGTAATACCTCCATTGGTTGAACTCTTACGAGGCAGGCTAACTTGGGTAGAGCAA 840
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      AGGGTTGCTGTTAGAGCTTTGGGGCATTTGGCTACATATCCCAGTACATTTCCTGCAGTT 900
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GCTGACCATGGAGAAGTACTTGAACTTGCTATTCAACTTGCTTCAAGTTCTCTAGAGATT 960
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GTGTATTCTCATTTTTACCAGTTTGTGGACCGAAGGATTGGCTACCACTGTGACCTTCTC 1020
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      ACACGAGGCATGGGTGGTGTGGAAATGGAATCTCGCAAAGCTGAGGAATGGGCAAGCCAA 1080
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      CTTCAGTGCTGGTCTTTGCAACTCATTAACTGCTTCGCATTTAAGTCTGAATTTCTCCAT 1140
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GATATTTGCAAGGCTGATTTTCTAGTCAAGTTACCTGGAATGTGGGGTGGACTCGTAAAT 1200
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GAGAACTCACCTGCTGGTGTTGGTTTGCTAAGAACTATCTGCCAGAGCAAGCTTGGCCGA 1260
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GGCCATGTTGCTAATATTCCTAGTGTTGTTGAAGCTCTCTGCAACATTGCCCGTTCTTCA 1320
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GATGACTGGCAATACATGGCTGTTGATTGTTTACTTTGGTTGGTGCAGGATTCAAATACA 1380
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      TGTCATAAGGTAATAGATAGAGTTGCCTCAACACTGATAGATTTAGCAAATATCTCAATG 1440
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      CTCGGTGATTATAAAAAACTTGGTGACACCATTGTCACAGTGCTCCAAGAATGTATGCAA 1500
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      CAATATGCAAATTCACGGAATTCAATTAGTACTCACACCAAAGAACAAATTGATGAACTC 1560
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      TTGAGTTCCAAGCAGAGTTTTAAATTGGAGAAGAATATGCCAAAGGAGGATCTTCATATA 1620
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      AAACAAGCAGCAGCATTGGTTGTTAAGTTGGAAGGCAATTCACTTTTCTCTTCAGGGAAC 1680
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      ATAGCAGGAGCTGCAGCAAAGTACTCTGAAGCACTTGCGCTGTGTCCAATGAAGTCTAAG 1740
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      AAAGAAAGAGTGGTGCTTTATAGTAATCGAGCTCAGTGTTATCTACTCCTGCAGCAGCCA 1800
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      TTGGCTGCCATAAGTGATGCTACCCGTGCATTGTGCCTTCATAGTCCTTTGAATCGCCAC 1860
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GCAAAAAGCTTGTGGAGAAGGGCTCAAGCATACGATATGCTTGGTTTAGCGAAAGAGAGC 1920
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      CTGTTGGATGCAATTCTCTTTATAAATGAATGCTCTCAGTCGAATGATCCTGACCTGTCA 1980
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      TTAAAGCAAAATAAAGTTCCTGATTATGCTGAGCGTTTGGTGAAGAAGCAGATGCGCACA 2040
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GCTTGGTTATTCAGGGAAGCAGCTTTGAAACATGGGGGAATCCATTGCGAGGGAGAAGCT 2100
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      AGTGATGCTTTTGGTCAAGAGGCAGATGACTCTGAGTGGGAAACAGCCAGTGAAAGTGAT 2160
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GCTGAGAATGATGCAACAGGAGAGGCAGATGATGAAACTGAATGGAAGAACGATAACCAA 2220
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      GTATGAGAAAAGCTGAGAACCAGGTTTCC-TTGCCA--TTCAGGACGATTGTTGGTGTTG 2277
consensus_8624#1      ---------------AGACCCAGGTTTCCCTTGCCCATTCCAGGACGATTGTTGGTGTTG 45
                                     *** ********** *****   * ********************

consensus_8624#0      CTTATG-TTAGTAGAAACAATGGAACCACCTGCTTGTCTTCTGTACGAGTAAACTGAAAC 2336
consensus_8624#1      CTTATGGTTAGTAGAAACAATGGAACCACCTGCTTGTCTTCTGTACGAGTAAACTGAAAC 105
                      ****** *****************************************************

consensus_8624#0      AAAGTTGTGAACTGGACGGAGCCAGCTTACAGAAAGCCTTGCAAGAATGGCTTTC-AAAA 2395
consensus_8624#1      AAAGTTGTGAACTGGACGGAGCCAGCTTACAGAAAGCCTTGCAAGAATGGCTTTCCAAAA 165
                      ******************************************************* ****

consensus_8624#0      GTGACAAATCTGGTGCCACTGTATTTATCCTATTGAGAACGAGGCTGAATTTTTCAATGC 2455
consensus_8624#1      GTGACAAATCTGGTGCCACTGTATTTATCCTATTGAGAACGAGGCTGAATTTTTCAATGC 225
                      ************************************************************

consensus_8624#0      CATTTATCATCTCATCACCATGTTGGATTTGTC-AGGGTTGTGCTTGTGATTCGTTCGAT 2514
consensus_8624#1      CATTTATCATCTCATCACCATGTTGGATTTGTCCAGGGTTGTGCTTGTGATTCGTTCGAT 285
                      ********************************* **************************

consensus_8624#0      GTGTTCTATTCGGGGAGTAGTTTCATGTTTGGTGTTGTAAAATGTGTTTCCACCGATTTT 2574
consensus_8624#1      GTGTTCTATTCGGGGAGTAGTTTCATGTTTGGTGTTGTAAAATGTGTTTCCACCGATTTT 345
                      ************************************************************

consensus_8624#0      TCAGCTTTTGAATGGACAAAACTGTGCCTTCTTTTTTTCCTCCTTTCTTGATGTGTGAAG 2634
consensus_8624#1      TCAGCTTTTGAATGGACAAAACTGTGCCTTCTTTTTTTCCTCCTTTCTTGATGTGTGAAG 405
                      ************************************************************

consensus_8624#0      TTTTGCCAAGAGGCAAACTCTGGCACTGTTTTCTATATTCTGCAGTATTGAATGTACATT 2694
consensus_8624#1      TTTTGCCAAGAGGCAAACTCTGGCACTGTTTTCTATATTCTGCAGTATTGAATGTACATT 465
                      ************************************************************

consensus_8624#0      TTCTTCAGGGTGGATGCTGTGTTTTCTTATTGTAAAACTCTATATTGGTTGAGGATTAAC 2754
consensus_8624#1      TTCTTCAGGGTGGATGCTGTGTTTTCTTATTGTAAAACTCTATATTGGTTGAGGATTAAC 525
                      ************************************************************

consensus_8624#0      TGGTTTCTAGTTTATGTGTCCGTAGGTTGAGTTTACTATGTGCTCAGTGGTTGTCTGCCT 2814
consensus_8624#1      TGGTTTCTAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 556
                      *********    *         *     *                              

consensus_8624#0      TTGTCTGGGTGCTCAGATAGCGACCTGAAATGTAAGGCTTGAGAACTTGAGTGTGGTGCT 2874
consensus_8624#1      ------------------------------------------------------------
                                                                                  

consensus_8624#0      CAAACCATATGTAAATATTGTTCTGCCTATTCTTAATGTTCATTTAGTAC 2924
consensus_8624#1      --------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)