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Oryza sativa
cluster # 8628 cluster # 8628       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8628#0 length = 1381 sequences # 4  
consensus_8628#1 length = 604 sequences # 1  

consensusID : consensus_8628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1381
fasta sequence
                              [TCTTTTTTGGTGAAAATCCAATCCAAGTTATGCAAATCTTTACCTAGCTCCAGCACTCAGGCTTCAAGACTGTACATAACTAGCAGACGATCACAACACACGCGAACATACGAACTAATTAAGTTGGCTATATTACAATGCGGAATATTTATTAGGCAAACCGGGAGAGCTAATTAACTAAGGTAGTGGTAGTACTTAAATTAACCAGCAGCAGAGCTAGGTGGTGATGACTGATGAACATGACAACATGTTTATTTATGCATCTCCCAACCAATCACGTCGTCGTCGCCGTCGACGACGACGATGACCTGAGCGTGTTGATGGTCTTCTCGAGCTCGTCCTTGTCGGCGCCGACGATGCGGCCGACCTCCTCGCCGCCCCTCGCCAGCACGAACGTCGGCATCGCCTCCACCCGCCAGGTCCGCGCCACCTCCTGCGATCATTCAGAAATCTTCAGCTGTTCGCGAGCTCGTCGACGTCGACCTTGAGGAAGGCGACGTCGGTGAAGCGGCCGGCCATCTCCTTGAACACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTTTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTTAATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATANTTAATANTCCNACTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATGTGACAGTACGAGCTTAGTTTGTGATCATCGTACTGAAATATGTCATATCTAATATGAGATTAATTTATTTTGGGATAGAGGAACTAAAGCATAAGTTCACTTGTAGCATAAGAAAGAGGACAATACTAACAACTGAACTACTCTGCTCGTCTCAAAAAACCGCAGGCTAAACTCAACTGCTCCACTAGAAAAGGAAAACTGAAGGCTGCTGTACTGTGAGCTGTGGTTTATTATAGTGCCATTTTTATTAATTAAGAGTGCATTATCTAGAACACCTTGATGAGTACTGCTAGTAGGTGGATGAAGGTATCTGATTCATTGGGGGGCCGTTTGGTTTAAGGAGCGAGATGACCCATTGACCATATGCACATCAAAAGTAACAGAAAGCATCAGAATCCCGTAAAACTCATATGTTCATCTGGAACACTCGAATGTT]

[+] EMBL CB681257             [TCTTTTTTGGTGAAAATCCAATCCAAGTTATGCAAATCTTTACCTAGCTCCAGCACTCAGGCTTCAAGACTGTACATAACTAGCAGACGATCACAACACACGCGAACATACGAACTAATTAAGTTGGCTATATTACAATGCGGAATATTTATTAGGCAAACCGGGAGAGCTAATTAACTAAGGTAGTGGTAGTACTTAAATTAACCAGCAGCAGAGCTAGGTGGTGATGACTGATGAACATGACAACATGTTTATTTATGCATCTCCCAACCAATCACGTCGTCGTCGCCGTCGACGACGACGATGACCTGAGCGTGTTGATGGTCTTCTCGAGCTCGTCCTTGTCGGCGCCGACGATGCGGCCGACCTCCTCGCCGCCCCTCGCCAGCACGAACGTCGGCATCGCCTCCACCCGCCAGGTCCGCGCCACCTCCTGCGATCATTCAGAAATCTTCAGCTGTTCGCGAGCTCGTCGACGTCGACCTTGAGGAAGGCGACGTCGGTGAAGCGGCCGGCCATCTCCTTGAACACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTTTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL C28850               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAACGG CGGCCA CNCCTTGAA AACGGC CCATCATCTTG ACGG CCACACCACGACGCCGAGAAG CTATCACCACCAGCTTTGTGGTG TCTTGT GGCGTCCCANAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCAC GCGGACTCGCCGCCCTCCT  CCGGCGGCGGGCTTCGGCTTCGACGTCGAGAA GCGCCGCCCATCTTGTTACAGTGAGCTGANCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTTAATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATANTTAATANTCCNACTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATGTGACAGTACGAGCTTAGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AA750918             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    caCACCA CTTTGTGGTGTTCTTGTGGGGGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCACG  GGACT  CCGCCCTCCT  CCGGCGGCGGGCTTCGGCTTCGACGTCGAGAA GCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB681256             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGTGGACGGCCACCACGGCGGACTCGCCGCCCTCATCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTTAATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATATTTAATATTCTCACTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATGTGACAGTACGAGCTTAGTTTGTGATCATCGTACTGAAATATGTCATATCTAATATGAGATTAATTTATTTTGGGATAGAGGAACTAAAGCATAAGTTCACTTGTAGCATAAGAAAGAGGACAATACTAACAACTGAACTACTCTGCTCGTCTCAAAAAACCGCAGGCTAAACTCAACTGCTCCACTAGAAAAGGAAAACTGAAGGCTGCTGTACTGTGAGCTGTGGTTTATTATAGTGCCATTTTTATTAATTAAGAGTGCATTATCTAGAACACCTTGATGAGTACTGCTAGTAGGTGGATGAAGGTATCTGATTCATTGGGGGGCCGTTTGGTTTAAGGAGCGAGATGACCCATTGACCATATGCACATCAAAAGTAACAGAAAGCATCAGAATCCCGTAAAACTCATATGTTCATCTGGAACACTCGAATGTT]


>consensus_8628#0 TCTTTTTTGGTGAAAATCCAATCCAAGTTATGCAAATCTTTACCTAGCTCCAGCACTCAG GCTTCAAGACTGTACATAACTAGCAGACGATCACAACACACGCGAACATACGAACTAATT AAGTTGGCTATATTACAATGCGGAATATTTATTAGGCAAACCGGGAGAGCTAATTAACTA AGGTAGTGGTAGTACTTAAATTAACCAGCAGCAGAGCTAGGTGGTGATGACTGATGAACA TGACAACATGTTTATTTATGCATCTCCCAACCAATCACGTCGTCGTCGCCGTCGACGACG ACGATGACCTGAGCGTGTTGATGGTCTTCTCGAGCTCGTCCTTGTCGGCGCCGACGATGC GGCCGACCTCCTCGCCGCCCCTCGCCAGCACGAACGTCGGCATCGCCTCCACCCGCCAGG TCCGCGCCACCTCCTGCGATCATTCAGAAATCTTCAGCTGTTCGCGAGCTCGTCGACGTC GACCTTGAGGAAGGCGACGTCGGTGAAGCGGCCGGCCATCTCCTTGAACACCGGCTCCAT CATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTTTGTGGTGTT CTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCACGGCGGA CTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCAT CTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCT TGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTTAATATTCTTACTTAG AGCATAAGTTCTCTTTACAAAATATTACAATANTTAATANTCCNACTTACCAACCTCCCA CCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATGTGACAGTACGAGCTT AGTTTGTGATCATCGTACTGAAATATGTCATATCTAATATGAGATTAATTTATTTTGGGA TAGAGGAACTAAAGCATAAGTTCACTTGTAGCATAAGAAAGAGGACAATACTAACAACTG AACTACTCTGCTCGTCTCAAAAAACCGCAGGCTAAACTCAACTGCTCCACTAGAAAAGGA AAACTGAAGGCTGCTGTACTGTGAGCTGTGGTTTATTATAGTGCCATTTTTATTAATTAA GAGTGCATTATCTAGAACACCTTGATGAGTACTGCTAGTAGGTGGATGAAGGTATCTGAT TCATTGGGGGGCCGTTTGGTTTAAGGAGCGAGATGACCCATTGACCATATGCACATCAAA AGTAACAGAAAGCATCAGAATCCCGTAAAACTCATATGTTCATCTGGAACACTCGAATGT T



consensusID : consensus_8628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence
                              [GCGAATAAAAATAGGGTGGCATAAACTCCCAGCGCGGAATATTTTTTCGCGCCAACCCCGGGAAAACTAAATTAACTAAGGAGGGGGTTAGTCCTAAATTAACCCACACACCAGACTTAGGGGGGGGAACGCCAAATAACCCAGCACACCCATGTTTATTTAAGCTATCTCCCCAACCAAACAAGTTTTTGGTCCCCCTTCGACGCCGACGAAGACCTGAGCGTTTGGAGGTTCTCCTGGAGCTCGTCCTGGTGGGCGCCGACGATGCGGCCGACTTCCTCGCAGGCCCTCGCAACCACGAACGTGGCCATCCCTCCCACCCGCCAGGTCCGCGCCACCTCCGCGAGCTCGTCGACGTCGACCTGGAGGAAGCCGACGTCGGTGAACCGCCCGCCCATCTCCTTGACCACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTNTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTGGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGT]

[-] EMBL CA754588             [GCGAATAAAAATAGGGTGGCATAAACTCCCAGCGCGGAATATTTTTTCGCGCCAACCCCGGGAAAACTAAATTAACTAAGGAGGGGGTTAGTCCTAAATTAACCCACACACCAGACTTAGGGGGGGGAACGCCAAATAACCCAGCACACCCATGTTTATTTAAGCTATCTCCCCAACCAAACAAGTTTTTGGTCCCCCTTCGACGCCGACGAAGACCTGAGCGTTTGGAGGTTCTCCTGGAGCTCGTCCTGGTGGGCGCCGACGATGCGGCCGACTTCCTCGCAGGCCCTCGCAACCACGAACGTGGCCATCCCTCCCACCCGCCAGGTCCGCGCCACCTCCGCGAGCTCGTCGACGTCGACCTGGAGGAAGCCGACGTCGGTGAACCGCCCGCCCATCTCCTTGACCACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTNTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTGGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGT]


>consensus_8628#1 GCGAATAAAAATAGGGTGGCATAAACTCCCAGCGCGGAATATTTTTTCGCGCCAACCCCG GGAAAACTAAATTAACTAAGGAGGGGGTTAGTCCTAAATTAACCCACACACCAGACTTAG GGGGGGGAACGCCAAATAACCCAGCACACCCATGTTTATTTAAGCTATCTCCCCAACCAA ACAAGTTTTTGGTCCCCCTTCGACGCCGACGAAGACCTGAGCGTTTGGAGGTTCTCCTGG AGCTCGTCCTGGTGGGCGCCGACGATGCGGCCGACTTCCTCGCAGGCCCTCGCAACCACG AACGTGGCCATCCCTCCCACCCGCCAGGTCCGCGCCACCTCCGCGAGCTCGTCGACGTCG ACCTGGAGGAAGCCGACGTCGGTGAACCGCCCGCCCATCTCCTTGACCACCGGCTCCATC ATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTNTGTGGTGTTC TTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTGGGAGTGGACGGCCACCACGGCGGAC TCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATC TTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8628#0      TCTTTTTTGGTGAAAATCCAATCCAAGTTATGCAAATCTTTACCTAGCTCCAGCACTCAG 60
consensus_8628#1      ------------------------------------------------------------
                                                                                  

consensus_8628#0      GCTTCAAGACTGTACATAACTAGCAGACGATCACAACACACGCGAACATACGAACTAATT 120
consensus_8628#1      -----------------------------------------GCGAATAAA------AATA 13
                                                               ***** * *      *** 

consensus_8628#0      AAGTTGGCTATATTAC-AATGCGGAATATTTATTAG-GCAAACC--GGGAGAGCTAA-TT 175
consensus_8628#1      GGGTGGCATAAACTCCCAGCGCGGAATATTTTTTCGCGCCAACCCCGGGAAAACTAAATT 73
                        ** *  ** * * * *  *********** ** * ** ****  **** * **** **

consensus_8628#0      AACTAAGGTAGTGGTAGTACTTAAATTAACCAGCAG--CAGAGCTAGGTGGTGATG-ACT 232
consensus_8628#1      AACTAAGGAGGGGGTTAGTCCTAAATTAACCCACACACCAGACTTAGGGGGGGGAACGCC 133
                      ********  * ***    * **********  **   ****  **** ** *     * 

consensus_8628#0      GATGAACATGACAA---CATGTTTATTTATGC-ATCTCCC-AACCAATCACGTCGTCG-- 285
consensus_8628#1      AAATAACCCAGCACACCCATGTTTATTTAAGCTATCTCCCCAACCAAACAAGTTTTTGGT 193
                       *  ***    **    ************ ** ******* ****** ** **  * *  

consensus_8628#0      TCGCCGTCGACGACGACGATGACCTGAGCGTGTTGATGGTCTTCTCGAGCTCGTCCTTGT 345
consensus_8628#1      CCCCCTTCGACGCCGACGAAGACCTGAGCGTTTGGAGGTTCTCCTGGAGCTCGTCCTGGT 253
                       * ** ****** ****** *********** * ** * *** ** *********** **

consensus_8628#0      CGGCGCCGACGATGCGGCCGACCTCCTCGCCGCCCCTCGCCAGCACGAACGTCGGCATCG 405
consensus_8628#1      GGGCGCCGACGATGCGGCCGACTTCCTCGCAGGCCCTCGCAACCACGAACGTGGCCATCC 313
                       ********************* ******* * ******* * ********* * **** 

consensus_8628#0      CCTCCACCCGCCAGGTCCGCGCCACCTCCTGCGATCATTCAGAAATCTTCAGCTGTTCGC 465
consensus_8628#1      CTCCCACCCGCCAGGTCCGCGCCACCTCC-----------------------------GC 344
                      *  **************************                             **

consensus_8628#0      GAGCTCGTCGACGTCGACCTTGAGGAAGGCGACGTCGGTGAAGCGGCCGGCCATCTCCTT 525
consensus_8628#1      GAGCTCGTCGACGTCGACCTGGAGGAAGCCGACGTCGGTGAACCGCCCGCCCATCTCCTT 404
                      ******************** ******* ************* ** *** **********

consensus_8628#0      GAACACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCAC 585
consensus_8628#1      GACCACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCAC 464
                      ** *********************************************************

consensus_8628#0      CAGCTTTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGAC 645
consensus_8628#1      CAGCTNTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTGGGAGTGGAC 524
                      ***** ******************************************** *********

consensus_8628#0      GGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGA 705
consensus_8628#1      GGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGA 584
                      ************************************************************

consensus_8628#0      GAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGA 765
consensus_8628#1      GAAGGCGCCGCCCATCTTGT---------------------------------------- 604
                      ********************                                        

consensus_8628#0      AGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTT 825
consensus_8628#1      ------------------------------------------------------------
                                                                                  

consensus_8628#0      AATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATANTTAATANTCCNA 885
consensus_8628#1      ------------------------------------------------------------
                                                                                  

consensus_8628#0      CTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATG 945
consensus_8628#1      ------------------------------------------------------------
                                                                                  

consensus_8628#0      TGACAGTACGAGCTTAGTTTGTGATCATCGTACTGAAATATGTCATATCTAATATGAGAT 1005
consensus_8628#1      ------------------------------------------------------------
                                                                                  

consensus_8628#0      TAATTTATTTTGGGATAGAGGAACTAAAGCATAAGTTCACTTGTAGCATAAGAAAGAGGA 1065
consensus_8628#1      ------------------------------------------------------------
                                                                                  

consensus_8628#0      CAATACTAACAACTGAACTACTCTGCTCGTCTCAAAAAACCGCAGGCTAAACTCAACTGC 1125
consensus_8628#1      ------------------------------------------------------------
                                                                                  

consensus_8628#0      TCCACTAGAAAAGGAAAACTGAAGGCTGCTGTACTGTGAGCTGTGGTTTATTATAGTGCC 1185
consensus_8628#1      ------------------------------------------------------------
                                                                                  

consensus_8628#0      ATTTTTATTAATTAAGAGTGCATTATCTAGAACACCTTGATGAGTACTGCTAGTAGGTGG 1245
consensus_8628#1      ------------------------------------------------------------
                                                                                  

consensus_8628#0      ATGAAGGTATCTGATTCATTGGGGGGCCGTTTGGTTTAAGGAGCGAGATGACCCATTGAC 1305
consensus_8628#1      ------------------------------------------------------------
                                                                                  

consensus_8628#0      CATATGCACATCAAAAGTAACAGAAAGCATCAGAATCCCGTAAAACTCATATGTTCATCT 1365
consensus_8628#1      ------------------------------------------------------------
                                                                                  

consensus_8628#0      GGAACACTCGAATGTT 1381
consensus_8628#1      ----------------
                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)