These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1381 fasta sequence [TCTTTTTTGGTGAAAATCCAATCCAAGTTATGCAAATCTTTACCTAGCTCCAGCACTCAGGCTTCAAGACTGTACATAACTAGCAGACGATCACAACACACGCGAACATACGAACTAATTAAGTTGGCTATATTACAATGCGGAATATTTATTAGGCAAACCGGGAGAGCTAATTAACTAAGGTAGTGGTAGTACTTAAATTAACCAGCAGCAGAGCTAGGTGGTGATGACTGATGAACATGACAACATGTTTATTTATGCATCTCCCAACCAATCACGTCGTCGTCGCCGTCGACGACGACGATGACCTGAGCGTGTTGATGGTCTTCTCGAGCTCGTCCTTGTCGGCGCCGACGATGCGGCCGACCTCCTCGCCGCCCCTCGCCAGCACGAACGTCGGCATCGCCTCCACCCGCCAGGTCCGCGCCACCTCCTGCGATCATTCAGAAATCTTCAGCTGTTCGCGAGCTCGTCGACGTCGACCTTGAGGAAGGCGACGTCGGTGAAGCGGCCGGCCATCTCCTTGAACACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTTTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTTAATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATANTTAATANTCCNACTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATGTGACAGTACGAGCTTAGTTTGTGATCATCGTACTGAAATATGTCATATCTAATATGAGATTAATTTATTTTGGGATAGAGGAACTAAAGCATAAGTTCACTTGTAGCATAAGAAAGAGGACAATACTAACAACTGAACTACTCTGCTCGTCTCAAAAAACCGCAGGCTAAACTCAACTGCTCCACTAGAAAAGGAAAACTGAAGGCTGCTGTACTGTGAGCTGTGGTTTATTATAGTGCCATTTTTATTAATTAAGAGTGCATTATCTAGAACACCTTGATGAGTACTGCTAGTAGGTGGATGAAGGTATCTGATTCATTGGGGGGCCGTTTGGTTTAAGGAGCGAGATGACCCATTGACCATATGCACATCAAAAGTAACAGAAAGCATCAGAATCCCGTAAAACTCATATGTTCATCTGGAACACTCGAATGTT] [+] EMBL CB681257 [TCTTTTTTGGTGAAAATCCAATCCAAGTTATGCAAATCTTTACCTAGCTCCAGCACTCAGGCTTCAAGACTGTACATAACTAGCAGACGATCACAACACACGCGAACATACGAACTAATTAAGTTGGCTATATTACAATGCGGAATATTTATTAGGCAAACCGGGAGAGCTAATTAACTAAGGTAGTGGTAGTACTTAAATTAACCAGCAGCAGAGCTAGGTGGTGATGACTGATGAACATGACAACATGTTTATTTATGCATCTCCCAACCAATCACGTCGTCGTCGCCGTCGACGACGACGATGACCTGAGCGTGTTGATGGTCTTCTCGAGCTCGTCCTTGTCGGCGCCGACGATGCGGCCGACCTCCTCGCCGCCCCTCGCCAGCACGAACGTCGGCATCGCCTCCACCCGCCAGGTCCGCGCCACCTCCTGCGATCATTCAGAAATCTTCAGCTGTTCGCGAGCTCGTCGACGTCGACCTTGAGGAAGGCGACGTCGGTGAAGCGGCCGGCCATCTCCTTGAACACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTTTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTG ] [-] EMBL C28850 [ AAACGG CGGCCA CNCCTTGAA AACGGC CCATCATCTTG ACGG CCACACCACGACGCCGAGAAG CTATCACCACCAGCTTTGTGGTG TCTTGT GGCGTCCCANAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCAC GCGGACTCGCCGCCCTCCT CCGGCGGCGGGCTTCGGCTTCGACGTCGAGAA GCGCCGCCCATCTTGTTACAGTGAGCTGANCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTTAATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATANTTAATANTCCNACTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATGTGACAGTACGAGCTTAGTTT ] [-] EMBL AA750918 [ caCACCA CTTTGTGGTGTTCTTGTGGGGGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCACG GGACT CCGCCCTCCT CCGGCGGCGGGCTTCGGCTTCGACGTCGAGAA GCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAA ] [-] EMBL CB681256 [ AGTGGACGGCCACCACGGCGGACTCGCCGCCCTCATCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTTAATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATATTTAATATTCTCACTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATGTGACAGTACGAGCTTAGTTTGTGATCATCGTACTGAAATATGTCATATCTAATATGAGATTAATTTATTTTGGGATAGAGGAACTAAAGCATAAGTTCACTTGTAGCATAAGAAAGAGGACAATACTAACAACTGAACTACTCTGCTCGTCTCAAAAAACCGCAGGCTAAACTCAACTGCTCCACTAGAAAAGGAAAACTGAAGGCTGCTGTACTGTGAGCTGTGGTTTATTATAGTGCCATTTTTATTAATTAAGAGTGCATTATCTAGAACACCTTGATGAGTACTGCTAGTAGGTGGATGAAGGTATCTGATTCATTGGGGGGCCGTTTGGTTTAAGGAGCGAGATGACCCATTGACCATATGCACATCAAAAGTAACAGAAAGCATCAGAATCCCGTAAAACTCATATGTTCATCTGGAACACTCGAATGTT] consensusID : consensus_8628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [GCGAATAAAAATAGGGTGGCATAAACTCCCAGCGCGGAATATTTTTTCGCGCCAACCCCGGGAAAACTAAATTAACTAAGGAGGGGGTTAGTCCTAAATTAACCCACACACCAGACTTAGGGGGGGGAACGCCAAATAACCCAGCACACCCATGTTTATTTAAGCTATCTCCCCAACCAAACAAGTTTTTGGTCCCCCTTCGACGCCGACGAAGACCTGAGCGTTTGGAGGTTCTCCTGGAGCTCGTCCTGGTGGGCGCCGACGATGCGGCCGACTTCCTCGCAGGCCCTCGCAACCACGAACGTGGCCATCCCTCCCACCCGCCAGGTCCGCGCCACCTCCGCGAGCTCGTCGACGTCGACCTGGAGGAAGCCGACGTCGGTGAACCGCCCGCCCATCTCCTTGACCACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTNTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTGGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGT] [-] EMBL CA754588 [GCGAATAAAAATAGGGTGGCATAAACTCCCAGCGCGGAATATTTTTTCGCGCCAACCCCGGGAAAACTAAATTAACTAAGGAGGGGGTTAGTCCTAAATTAACCCACACACCAGACTTAGGGGGGGGAACGCCAAATAACCCAGCACACCCATGTTTATTTAAGCTATCTCCCCAACCAAACAAGTTTTTGGTCCCCCTTCGACGCCGACGAAGACCTGAGCGTTTGGAGGTTCTCCTGGAGCTCGTCCTGGTGGGCGCCGACGATGCGGCCGACTTCCTCGCAGGCCCTCGCAACCACGAACGTGGCCATCCCTCCCACCCGCCAGGTCCGCGCCACCTCCGCGAGCTCGTCGACGTCGACCTGGAGGAAGCCGACGTCGGTGAACCGCCCGCCCATCTCCTTGACCACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTNTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTGGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8628#0 TCTTTTTTGGTGAAAATCCAATCCAAGTTATGCAAATCTTTACCTAGCTCCAGCACTCAG 60 consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 GCTTCAAGACTGTACATAACTAGCAGACGATCACAACACACGCGAACATACGAACTAATT 120 consensus_8628#1 -----------------------------------------GCGAATAAA------AATA 13 ***** * * *** consensus_8628#0 AAGTTGGCTATATTAC-AATGCGGAATATTTATTAG-GCAAACC--GGGAGAGCTAA-TT 175 consensus_8628#1 GGGTGGCATAAACTCCCAGCGCGGAATATTTTTTCGCGCCAACCCCGGGAAAACTAAATT 73 ** * ** * * * * *********** ** * ** **** **** * **** ** consensus_8628#0 AACTAAGGTAGTGGTAGTACTTAAATTAACCAGCAG--CAGAGCTAGGTGGTGATG-ACT 232 consensus_8628#1 AACTAAGGAGGGGGTTAGTCCTAAATTAACCCACACACCAGACTTAGGGGGGGGAACGCC 133 ******** * *** * ********** ** **** **** ** * * consensus_8628#0 GATGAACATGACAA---CATGTTTATTTATGC-ATCTCCC-AACCAATCACGTCGTCG-- 285 consensus_8628#1 AAATAACCCAGCACACCCATGTTTATTTAAGCTATCTCCCCAACCAAACAAGTTTTTGGT 193 * *** ** ************ ** ******* ****** ** ** * * consensus_8628#0 TCGCCGTCGACGACGACGATGACCTGAGCGTGTTGATGGTCTTCTCGAGCTCGTCCTTGT 345 consensus_8628#1 CCCCCTTCGACGCCGACGAAGACCTGAGCGTTTGGAGGTTCTCCTGGAGCTCGTCCTGGT 253 * ** ****** ****** *********** * ** * *** ** *********** ** consensus_8628#0 CGGCGCCGACGATGCGGCCGACCTCCTCGCCGCCCCTCGCCAGCACGAACGTCGGCATCG 405 consensus_8628#1 GGGCGCCGACGATGCGGCCGACTTCCTCGCAGGCCCTCGCAACCACGAACGTGGCCATCC 313 ********************* ******* * ******* * ********* * **** consensus_8628#0 CCTCCACCCGCCAGGTCCGCGCCACCTCCTGCGATCATTCAGAAATCTTCAGCTGTTCGC 465 consensus_8628#1 CTCCCACCCGCCAGGTCCGCGCCACCTCC-----------------------------GC 344 * ************************** ** consensus_8628#0 GAGCTCGTCGACGTCGACCTTGAGGAAGGCGACGTCGGTGAAGCGGCCGGCCATCTCCTT 525 consensus_8628#1 GAGCTCGTCGACGTCGACCTGGAGGAAGCCGACGTCGGTGAACCGCCCGCCCATCTCCTT 404 ******************** ******* ************* ** *** ********** consensus_8628#0 GAACACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCAC 585 consensus_8628#1 GACCACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCAC 464 ** ********************************************************* consensus_8628#0 CAGCTTTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGAC 645 consensus_8628#1 CAGCTNTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTGGGAGTGGAC 524 ***** ******************************************** ********* consensus_8628#0 GGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGA 705 consensus_8628#1 GGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGA 584 ************************************************************ consensus_8628#0 GAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGA 765 consensus_8628#1 GAAGGCGCCGCCCATCTTGT---------------------------------------- 604 ******************** consensus_8628#0 AGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTT 825 consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 AATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATANTTAATANTCCNA 885 consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 CTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATG 945 consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 TGACAGTACGAGCTTAGTTTGTGATCATCGTACTGAAATATGTCATATCTAATATGAGAT 1005 consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 TAATTTATTTTGGGATAGAGGAACTAAAGCATAAGTTCACTTGTAGCATAAGAAAGAGGA 1065 consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 CAATACTAACAACTGAACTACTCTGCTCGTCTCAAAAAACCGCAGGCTAAACTCAACTGC 1125 consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 TCCACTAGAAAAGGAAAACTGAAGGCTGCTGTACTGTGAGCTGTGGTTTATTATAGTGCC 1185 consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 ATTTTTATTAATTAAGAGTGCATTATCTAGAACACCTTGATGAGTACTGCTAGTAGGTGG 1245 consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 ATGAAGGTATCTGATTCATTGGGGGGCCGTTTGGTTTAAGGAGCGAGATGACCCATTGAC 1305 consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 CATATGCACATCAAAAGTAACAGAAAGCATCAGAATCCCGTAAAACTCATATGTTCATCT 1365 consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 GGAACACTCGAATGTT 1381 consensus_8628#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||