Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8631 cluster # 8631       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8631#0 length = 627 sequences # 4  
consensus_8631#1 length = 557 sequences # 1  

consensusID : consensus_8631#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 627
fasta sequence
                              [CGGAATCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATG-ACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTG-GCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGA-TTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTTTGATCAAGTGTTTTAAAAAAAAAAAAA]

[+] EMBL AU108934             [CGGAATCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGAACGTCCATGCTCGCCGTTCCCGGGNAAGGCCTCGGGTGNGCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTNTGGAACCAGGAGATTTAGTAGTCCGTCAAGTT                                                                                                                                                                                                                                               ]
[+] EMBL AK063492             [     TCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATG ACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTG GCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGA TTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGA                                         ]
[+] EMBL OS0934A              [                               GAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATG ACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTG GCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAA CAGGAGA TTAGTAGTCCGTNAAGTTCATTTGTGAGCCTGCAGAATT                                                                                                                                                                                                                          ]
[+] EMBL AU032302             [                                                                                                                                                                                                                                                                            G GCTCACGGAAGCTGAAACTGATGGNTTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGA TTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATNCGTTGCTAGCTACTGTAAAATGTTGCATAATTTTTTTTTCTTTTGATCAAGTGTTTTAAAAAAAAAAAAA]


>consensus_8631#0 CGGAATCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTC TCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTC TCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTAT GCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGC TCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGAAACTGATGGATTATGCT GAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGG AACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAG GAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGG ATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCAT TGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTT TGATCAAGTGTTTTAAAAAAAAAAAAA



consensusID : consensus_8631#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence
                              [CGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTTTGATCAAGTGATTTAAAAATGCT]

[+] EMBL AK062940             [CGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTTTGATCAAGTGATTTAAAAATGCT]


>consensus_8631#1 CGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAG GTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCC CCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCT GCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGCTCGCCGTTCCCGGGCAAGGCCT CGGGTGGCTCACGGAAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAG GAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCA CTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTG CTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGG ACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTTTGATCA AGTGATTTAAAAATGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8631#0      CGGAATCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTC 60
consensus_8631#1      ----------------------CGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTC 38
                                            **************************************

consensus_8631#0      TCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTC 120
consensus_8631#1      TCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTC 98
                      ************************************************************

consensus_8631#0      TCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTAT 180
consensus_8631#1      TCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTAT 158
                      ************************************************************

consensus_8631#0      GCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGC 240
consensus_8631#1      GCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGC 218
                      ************************************************************

consensus_8631#0      TCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGAAACTGATGGATTATGCT 300
consensus_8631#1      TCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGA----------------- 261
                      *******************************************                 

consensus_8631#0      GAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGG 360
consensus_8631#1      ---------------------------TACTGATGGAGTATGACGGCAGCCTGCTTCTGG 294
                                                 *********************************

consensus_8631#0      AACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAG 420
consensus_8631#1      AACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAG 354
                      ************************************************************

consensus_8631#0      GAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGG 480
consensus_8631#1      GAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGG 414
                      ************************************************************

consensus_8631#0      ATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCAT 540
consensus_8631#1      ATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCAT 474
                      ************************************************************

consensus_8631#0      TGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTT 600
consensus_8631#1      TGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTT 534
                      ************************************************************

consensus_8631#0      TGATCAAGTGTTTTAAAAAAAAAAAAA 627
consensus_8631#1      TGATCAAGTGATTTAAAAATGCT---- 557
                      ********** ********        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)