cluster # 864

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Oryza sativa
cluster # 864 cluster # 864 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_864#0 length = 325 sequences # 1

consensus_864#1 length = 314 sequences # 1

consensusID : consensus_864#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence

                              [CATGGCCGGCGGCNTGGNCGNGGNCGNTGNTCCCCCGGCTNGCGGCAGCGGTGNTGGCCCCAAGATCGNGGNGGTCGACTAAGCGNGAAATTTGNTAGTGANCCGCGCTTCAAGTTATCTTATTGCNTTATTNGNGTCTCTTTTATGTTGTGTTAAAAANCTTTGCTGCTATGACTTNTGNTGATCCCCTTGGTNTGTTTGGGCAGTCCTTTTGAATTGAAGAACTGCGTTGGGNGCTCTNTGNGNACTNTGAATTGCGTGNGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU165899             [CATGGCCGGCGGCNTGGNCGNGGNCGNTGNTCCCCCGGCTNGCGGCAGCGGTGNTGGCCCCAAGATCGNGGNGGTCGACTAAGCGNGAAATTTGNTAGTGANCCGCGCTTCAAGTTATCTTATTGCNTTATTNGNGTCTCTTTTATGTTGTGTTAAAAANCTTTGCTGCTATGACTTNTGNTGATCCCCTTGGTNTGTTTGGGCAGTCCTTTTGAATTGAAGAACTGCGTTGGGNGCTCTNTGNGNACTNTGAATTGCGTGNGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_864#0
CATGGCCGGCGGCNTGGNCGNGGNCGNTGNTCCCCCGGCTNGCGGCAGCGGTGNTGGCCC
CAAGATCGNGGNGGTCGACTAAGCGNGAAATTTGNTAGTGANCCGCGCTTCAAGTTATCT
TATTGCNTTATTNGNGTCTCTTTTATGTTGTGTTAAAAANCTTTGCTGCTATGACTTNTG
NTGATCCCCTTGGTNTGTTTGGGCAGTCCTTTTGAATTGAAGAACTGCGTTGGGNGCTCT
NTGNGNACTNTGAATTGCGTGNGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_864#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [GCTTGGACGNGGACGNTGCTCCCCCGGNTGGCGGCAGCGGTGCTGGCCCCNAGNTCGNGGNGGTCGNCTNAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTNTCTTNTTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTNTGACTTNTGNTGNTNCCCTTGGTCTGTTTGGGCAGTCCTTTTGAATTGAAGAACTGCGTTGGGNGCTCTNTGNGAACTNTGAATTGCGTGNGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU075785             [GCTTGGACGNGGACGNTGCTCCCCCGGNTGGCGGCAGCGGTGCTGGCCCCNAGNTCGNGGNGGTCGNCTNAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTNTCTTNTTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTNTGACTTNTGNTGNTNCCCTTGGTCTGTTTGGGCAGTCCTTTTGAATTGAAGAACTGCGTTGGGNGCTCTNTGNGAACTNTGAATTGCGTGNGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_864#1
GCTTGGACGNGGACGNTGCTCCCCCGGNTGGCGGCAGCGGTGCTGGCCCCNAGNTCGNGG
NGGTCGNCTNAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTNTCTTNTTGCATTAT
TAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTNTGACTTNTGNTGNTNCCCTT
GGTCTGTTTGGGCAGTCCTTTTGAATTGAAGAACTGCGTTGGGNGCTCTNTGNGAACTNT
GAATTGCGTGNGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_864#0      CATGGCCGGCGGCNTGGNCGNGGNCGNTGNTCCCCCGGCTNGCGGCAGCGGTGNTGGCCC 60
consensus_864#1      -----------GCTTGGACGNGGACGNTGCTCCCCCGGNTGGCGGCAGCGGTGCTGGCCC 49
                                ** *** ***** ***** ******** * ************ ******

consensus_864#0      CAAGATCGNGGNGGTCGACTAAGCGNGAAATTTGNTAGTGANCCGCGCTTCAAGTTATCT 120
consensus_864#1      CNAGNTCGNGGNGGTCGNCTNAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTNTCT 109
                     * ** ************ ** **** ******** ****** ************** ***

consensus_864#0      TATTGCNTTATTNGNGTCTCTTTTATGTTGTGTTAAAAANCTTTGCTGCTATGACTTNTG 180
consensus_864#1      TNTTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTNTGACTTNTG 169
                     * **** ***** * ************************ ********** *********

consensus_864#0      NTGATCCCCTTGGTNTGTTTGGGCAGTCCTTTTGAATTGAAGAACTGCGTTGGGNGCTCT 240
consensus_864#1      NTGNTNCCCTTGGTCTGTTTGGGCAGTCCTTTTGAATTGAAGAACTGCGTTGGGNGCTCT 229
                     *** * ******** *********************************************

consensus_864#0      NTGNGNACTNTGAATTGCGTGNGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 300
consensus_864#1      NTGNGAACTNTGAATTGCGTGNGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 289
                     ***** ***************** ************************************

consensus_864#0      AAAAAAAAAAAAAAAAAAAAAAAAA 325
consensus_864#1      AAAAAAAAAAAAAAAAAAAAAAAAA 314
                     *************************