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Oryza sativa
cluster # 8652 cluster # 8652       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8652#0 length = 1412 sequences # 5  

consensusID : consensus_8652#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1412
fasta sequence
                              [ATCCTCCCACTCCACCTCGGAGCTGAGCTCTGCTTCTCTCCCGATCTCTCCACCCACCGCAGCAGCATCCTTTCGACCTCTCTAGGGTTCCAGCCTCGAGTTGGCCTCGTCCCCCCCCCCCCCCCCCACATTCGCTGCGAGGTTGCTGCTCGCTTCACTTGTCTTCGGTTTGATTTCCCCCCACCTAACTGATTCTGATTGATACGGCTCGGCTCGTGTGTGCGGCTCACTTAGGTTTGGGATTCTCTTCCGGATTGGATTGGTGGAGTGGCAGGGAATTGTTAGTTCTGGTGTGGTTTGTGGTTAAGAGAAGGGGGAAATAGCTATGGAGTGTCTGACCACAAGTTTTACTAGGAATCCGGGAAGGGAGTATAGTCTCATATGTCCGAGCGAAGCTCTGTCTGAAAAACAAAGGATTCAAAGAAGGGTCCTATGCTATTTTCCAGCTTCCACAAACTCAAGACGATGTCGCAAGTTCACAACTATGGCATATCCTGTTAGCCCAATAGCTGGCAGACGTTCAAATTGGAGATCTTTTGCTGCAAGTCTGAATTTGGAAGATGGTCCTGCATCCTCTGACTCAACATCATCCCCTTCAGAGCAAACTAGTGATGGTGGTGAAGTTTATGGTGACCCTTCTGAAAATCTGAATTCTCGGAAACTTAAATCTGACGAGTTGAAATCTCTTTTGGCTGATTCAGAACGATCTAAGCTTTTGAAAAAGCTTAGTGAAGCAAACCAATACAACCGGTTCCTCAAGAGACAGTTGCAAATGAAGGATAATGACGTTGTGAAGTTCAAGAGTGAACTTGCCGTTATGGAACTTGAACTGCAGGCTCTGGTTGCCCTAGCTGAAGAGATTGCTAATTTTGATGTTCCATCTGGGTCTAGGAAGATAAATGGAAAATATATCCAGTCACATCTTCTCACCAGATTAGAAGCTGTTCATGATAAGGTTATGGAACAAATTAAGGATGTAGACTCTTTAAAGCACCAAGAAATTTCTGTCTTCTGGGTTGGCATTGCTGAGAATGTACAAATTATGGGCTCCTTCGATGGCTGGTCCCAGGGAGAGGCAATGTCCATGGAGTATTCAGGTTACCAAGCAAGATTCTCTGCAACTCTGAATCTTAGACCTGGGAGGTATGAGATCAAATTCTTGGTTGATGGAGAGTGGAGGCTGTCACTGGAGTACCCAATTGATGGCGAAGGTTCAATGCAGAACAATATACTTGTTGTAAATTAATGTAGATATCTGTTGGCTCCTAGTTTGCCATAGTTGTAACTTGCAGCTATAAAACCTAGCGCAAGATTGAACTGTACTCGATTGCTATCATGCATCCGATTTGCAAAATTTCACTTTACCATGAAATGCAAGGCCTTTTTTTCCTGGTTGGAAAAAAAAAAAAAAA]

[+] EMBL AK072017             [ATCCTCCCACTCCACCTCGGAGCTGAGCTCTGCTTCTCTCCCGATCTCTCCACCCACCGCAGCAGCATCCTTTCGACCTCTCTAGGGTTCCAGCCTCGAGTTGGCCTCGTCCCCCCCCCCCCCCCCCACATTCGCTGCGAGGTTGCTGCTCGCTTCACTTGTCTTCGGTTTGATTTCCCCCCACCTAACTGATTCTGATTGATACGGCTCGGCTCGTGTGTGCGGCTCACTTAGGTTTGGGATTCTCTTCCGGATTGGATTGGTGGAGTGGCAGGGAATTGTTAGTTCTGGTGTGGTTTGTGGTTAAGAGAAGGGGGAAATAGCTATGGAGTGTCTGACCACAAGTTTTACTAGGAATCCGGGAAGGGAGTATAGTCTCATATGTCCGAGCGAAGCTCTGTCTGAAAAACAAAGGATTCAAAGAAGGGTCCTATGCTATTTTCCAGCTTCCACAAACTCAAGACGATGTCGCAAGTTCACAACTATGGCATATCCTGTTAGCCCAATAGCTGGCAGACGTTCAAATTGGAGATCTTTTGCTGCAAGTCTGAATTTGGAAGATGGTCCTGCATCCTCTGACTCAACATCATCCCCTTCAGAGCAAACTAGTGATGGTGGTGAAGTTTATGGTGACCCTTCTGAAAATCTGAATTCTCGGAAACTTAAATCTGACGAGTTGAAATCTCTTTTGGCTGATTCAGAACGATCTAAGCTTTTGAAAAAGCTTAGTGAAGCAAACCAATACAACCGGTTCCTCAAGAGACAGTTGCAAATGAAGGATAATGACGTTGTGAAGTTCAAGAGTGAACTTGCCGTTATGGAACTTGAACTGCAGGCTCTGGTTGCCCTAGCTGAAGAGATTGCTAATTTTGATGTTCCATCTGGGTCTAGGAAGATAAATGGAAAATATATCCAGTCACATCTTCTCACCAGATTAGAAGCTGTTCATGATAAGGTTATGGAACAAATTAAGGATGTAGACTCTTTAAAGCACCAAGAAATTTCTGTCTTCTGGGTTGGCATTGCTGAGAATGTACAAATTATGGGCTCCTTCGATGGCTGGTCCCAGGGAGAGGCAATGTCCATGGAGTATTCAGGTTACCAAGCAAGATTCTCTGCAACTCTGAATCTTAGACCTGGGAGGTATGAGATCAAATTCTTGGTTGATGGAGAGTGGAGGCTGTCACTGGAGTACCCAATTGATGGCGAAGGTTCAATGCAGAACAATATACTTGTTGTAAATTAATGTAGATATCTGTTGGCTCCTAGTTTGCCATAGTTGTAACTTGCAGCTATAAAACCTAGCGCAAGATTGAACTGTACTCGATTGCTATCATGCATCCGATTTGCAAAATTTCA                                                     ]
[-] EMBL CA759665             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAATCCAACCGGTTCCTCCAGAGGCAGTTGCAAATGAAGGATAATGGCGTTGTGAAGTTCAAGAGTGAACTTGCCGTTATGGAACTTGAACTGCAGGCTCTGGTTGCCCTAGCTGAAGAGATTGCTAATTNTGATGTTCCATCTGGGTCTAGGAAGATAAATGGAAAATATATCCAGTCACATCTTCTCACCAGATTAGAAGCTGTTCATGATAAGGTTATGGAACAAATTAAGGATGTAGACTCTTTAAAGCACCAAGAAATTTCTGTTTTTTGGGTTGGCATTGCTGAGAATGTACAAATTATGGGCTCCTTCGATGGCTGGTCCCAGGGAGAGGCAATGTCCATGGAGTATTCAGGTTACCAAGCAAGATTCTTTGCAACTTTGAATTTTAGACCTGGGAGGTATGAGATCAAATTCTTGGTTGATGGAGAGTGGAGGCTGTCACTGGAGTACCCAATTGATGGCGAAGGTTCAATGCAGAACAATATACTTGTTGTAAATTAATGTAGATATCTGTTGGCTCCTAGTTTGCCATAGTTGTAACTTGCAGCTATAAAACCTAGCGCAAGATTGAACTGTACTCGATTGCTATCATGCATCCGATTTGCAAAATTTCACTTTACCATGAAATGCAAGGCCTTTTTTTCCTGGTTGGAAAAAAAAAAAAAAA]
[+] EMBL AA751387             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATGGAACTTGAACTGCAGGCTCTGGTTGCCCTAGCTGAAGAGATTGCTAATTTTNATGTTCCATCTGGGTCTAGGAAGATAAATGGAAAATATATCCAGTCACATCTTNNNACCAGATTAGAAGCTGTTCATGATAAGGTTATGGAACAAATTAAGGATGTAGACTCTTTAAANCACCAAGAAATTTCTGTCTTCTGGGTTGGCATTGCTGAGAATGTACAAAT                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AA750149             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGAACTTGAACTGCAGGCTCTGGTTGCCCTAGCTGAAGAGATTGCTAATTTTGATGTTCCATCTGGGTCTAGGAAGATAAATGGAAAATATATCCAGTCACATCTTCTCACCAGATTAGAAGCTGTTCATGATAAGGTTATGGAACAAATTAAGGATGTAGAC C NSAAAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK103955             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTCTAGGAAGATAAATGGAAAATATATCCAGTCACATCTTCTCACCAGATTAGAAGCTGTTCATGATAAGGTTATGGAACAAATTAAGGATGTAGACTCTTTAAAGCACCAAGAAATTTCTGTCTTCTGGGTTGGCATTGCTGAGAATGTACAAATTATGGGCCCCTTCGATGGCTGGTCCCAGGGAGAGGCAATGTCCATGGAGTATTCAGGTTACCAAGCAAGATTCTCTGCAACTCTGAATCTTAGACCTGGGAGGTATGAGATCAAATTCTTGGTTGATGGAGAGTGGAGGCTGTCACTGGAGTACCCAATTGATGGCGAAGGTTCAATGCAGAACAATATACTTGTTGTAAATTAATGTAGATATCTGTTGGCTCCTAGTTTGCCATAGTTGTAACTTGCAGCTATAAAACCTAGCGCAAGATTGAACTGTACTCGATTGCTATCATGCATCCGATTTGCAAAATTTCACTTTACCATGAAATGCAAGGC                                ]


>consensus_8652#0 ATCCTCCCACTCCACCTCGGAGCTGAGCTCTGCTTCTCTCCCGATCTCTCCACCCACCGC AGCAGCATCCTTTCGACCTCTCTAGGGTTCCAGCCTCGAGTTGGCCTCGTCCCCCCCCCC CCCCCCCACATTCGCTGCGAGGTTGCTGCTCGCTTCACTTGTCTTCGGTTTGATTTCCCC CCACCTAACTGATTCTGATTGATACGGCTCGGCTCGTGTGTGCGGCTCACTTAGGTTTGG GATTCTCTTCCGGATTGGATTGGTGGAGTGGCAGGGAATTGTTAGTTCTGGTGTGGTTTG TGGTTAAGAGAAGGGGGAAATAGCTATGGAGTGTCTGACCACAAGTTTTACTAGGAATCC GGGAAGGGAGTATAGTCTCATATGTCCGAGCGAAGCTCTGTCTGAAAAACAAAGGATTCA AAGAAGGGTCCTATGCTATTTTCCAGCTTCCACAAACTCAAGACGATGTCGCAAGTTCAC AACTATGGCATATCCTGTTAGCCCAATAGCTGGCAGACGTTCAAATTGGAGATCTTTTGC TGCAAGTCTGAATTTGGAAGATGGTCCTGCATCCTCTGACTCAACATCATCCCCTTCAGA GCAAACTAGTGATGGTGGTGAAGTTTATGGTGACCCTTCTGAAAATCTGAATTCTCGGAA ACTTAAATCTGACGAGTTGAAATCTCTTTTGGCTGATTCAGAACGATCTAAGCTTTTGAA AAAGCTTAGTGAAGCAAACCAATACAACCGGTTCCTCAAGAGACAGTTGCAAATGAAGGA TAATGACGTTGTGAAGTTCAAGAGTGAACTTGCCGTTATGGAACTTGAACTGCAGGCTCT GGTTGCCCTAGCTGAAGAGATTGCTAATTTTGATGTTCCATCTGGGTCTAGGAAGATAAA TGGAAAATATATCCAGTCACATCTTCTCACCAGATTAGAAGCTGTTCATGATAAGGTTAT GGAACAAATTAAGGATGTAGACTCTTTAAAGCACCAAGAAATTTCTGTCTTCTGGGTTGG CATTGCTGAGAATGTACAAATTATGGGCTCCTTCGATGGCTGGTCCCAGGGAGAGGCAAT GTCCATGGAGTATTCAGGTTACCAAGCAAGATTCTCTGCAACTCTGAATCTTAGACCTGG GAGGTATGAGATCAAATTCTTGGTTGATGGAGAGTGGAGGCTGTCACTGGAGTACCCAAT TGATGGCGAAGGTTCAATGCAGAACAATATACTTGTTGTAAATTAATGTAGATATCTGTT GGCTCCTAGTTTGCCATAGTTGTAACTTGCAGCTATAAAACCTAGCGCAAGATTGAACTG TACTCGATTGCTATCATGCATCCGATTTGCAAAATTTCACTTTACCATGAAATGCAAGGC CTTTTTTTCCTGGTTGGAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)