Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8662 cluster # 8662       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8662#0 length = 2635 sequences # 4  
consensus_8662#1 length = 641 sequences # 1  

consensusID : consensus_8662#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2635
fasta sequence
                              [GGAGATCAATCGGCAAGCCAAAAAACAAAAAAAGATTTCTTTTCTTTTCTTTTCCTCCTGTTGCTCGTCGACGCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCATCGCCATCAACTCTCCCGGCCGGCCGTCTTCTTCCTCCGCTCCCTTTTGGTCTGAATGAGGCAGGAGCTAGTCAAACGCTCCTTTAGAGAGGATGCTTCAATGGCAGGTGCCATCTTCATGTCCAACACCGCCACAAGGGAGCTGTGCTTCCGTTCCAACATCTTTGGACTTCCCATAGAGTACCAACCTTTTGTGCGGAATATCAGACAAGGAATGCCTTTGTTTCTGTTTGATCATACTGAACGCAAACTCTATGGGGTCTTTGAGGCTACCTCTGATGGTGGATTCAATATTATCAGATCTGCCTTTTCGTCGATTGGATGCTCATATCCTGCACAGGTCTGCTTCAAAATTATTTGGAAGTGCAGACCACTCACCGAAGATGAGTTTTCACCTGCCATAAAAGAGAACTACTATATGCCATGGAAGTTCTACTTTGACCTTTCCTACCAACAGGTTGTCTGCTTATATCAGTTATTTGATGAGAAGAGGGTTGAACATCCTATTCACAACCATTCAAAGAGTGCTAATTTGGAAAATGATCCCTTTAGGAAAGGGACACAAGAAAGAAAGAGCTTGAGTCCAAATATTCCTCATTTTCCTGCTGATCAGCCAGGTCTTTTTATGCCTGCGAGTACCCCCAGATTTTCAACAGTTGAAGCAAGCTACTGTGCATCCACAAGCATGCACCAAGCACCACATCCCAATATGTCAATGCCCCTGGGAACTAATCCTTTTGGAGTTCAAATTGCACCTGTCCACAACAGCCATCACGACCAAGCAGAACTACCTTACAACAATAACATGCTTTTTCCTGGATACTTGCCTTCTGGACATGTAGCTCGGGACACAACTCAGGAACTTGGGCTTTCTGCAAATCACTCATATCCTCCATCTATGGGCTATGCATACGGTTGCTTGCCGCCTCCTGGACATAGACCTCAGGATGCAATTGCAGGAGATGTAAACTATGCCCCTCCATATCCTCAATTTCCTCTGCCAAATGAACAAGGCAGTGCTACTAACAGGAGAGATTATTATGATGTCCACTGCAAACAATGCCAGTTTGAAGATATTTATGAATCGGAGCATCAGCACTTCAGCAAAGCAAAAGTCTTAGCACCTCCAATATTAAACCAACAAGATGTTCCAGTATACCCTGCAATTGCTGAATCAGCATTTGATCAGCGGAAAGAATGTTTCACTGAAGAAGACTCTGAGAATGCTCGACAGAAACAAAGTTTTAATCACACTGATATGGTGTTTTCTGGTCTTGGAAATAGCAATAGAGCCTACATGCCAGACCATCTAAACAAAAATCCTGATATAAGATCTGAAAGCAACACAATAGCTGTTGGTCAGCATGCACAAAGCAGTGTGTTTTCTCGCTTATCACGGATCCCACCACCACTGCATCAAGAAATTCCTGGTCCTTCGCTCAACAAGTTGGTTCTCTCACTTTCTCAGAGAGCAGAACATTGGGGTAACCAGGATAAAATAATCACCAATGATGTTTGTGAACAGTTGGTCAGTGAGCAAGTAATGGATACACCCTATCCTCTTGCTGAGTTGAACCAGCAAAGCGGCTTAATTGAAGAAGAAATTGAAGGGCTTGCATTCATGAACTTTAAGAGACGCAGCGAAACAAGGAACTTGGATGCAAATCTAGGAAAGGAAATTAGGGGGCAAGTGAAGAGAAGAAAGCTTGTTCGCCCTTCCTTTGGAGAAGTTAACAATGCTGGTAGTTCTGGAAAAGAGCTTGAAGCTAAAGTCTTAGAGGGAGAAAAACATAGCAATGATGAACATGATGAAAACAAGTTCAGTATTGACCTAAATAAACCTGCTGCCATAGATGGTGATGTAGCAAAGGAGGATGATACCACCACCGCATTGCCACATCCTTCTGTTGCGATCAAGATGCATAAAGAGAAACCATCTGAAGAAAACATGAGCAAGCCAAACAGCCCAAATACGACGGAAGAGATGAAAAAACAAGATCCATCCCTTGACAGCGCCACGCATACTGAAAAGATTTCACTTGAATTAGATGTTGCGGATTTGAATACAATTGACCAGTCCAAACTGCAAGCAATTCTCAGCTCATCTCTGTTGCAAGCACTTGACAAGCTCAGAAGAGAGAAGCTCAACAACTCTGAAGAGGCTGAAGAGGTAAAGATAGCAACTTGACTGTTTCCATGAACTCTGAAGGAGATGCAAAGCCTACATGCAGTTGATTTTAGTACGTAGTACCAACCAATACTACTTCAGCAGTACTGGAGCAGAATGACTACAAGGCATGGTTAAGCACCAAGTATCATGTGATGTAGTATAGGAACAATAGCTACCTTTTCTCATGTAGTAGTACCATTGCTATTTTGTGTTATCCTATAAAACTAACTAATATTCTCGGGGAAGTACGGCTCTCTCACGCTGCTCTGCCACGTAGATCTGTGTGATCTGTCATGTGGAATTGTAAAGCTTCTGCGTGCAAAGAAATGGATTGAGTTTCTCTATAGTTATAGTGCTGTT]

[+] EMBL AK106611             [GGAGATCAATCGGCAAGCCAAAAAACAAAAAAAGATTTCTTTTCTTTTCTTTTCCTCCTGTTGCTCGTCGACGCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCATCGCCATCAACTCTCCCGGCCGGCCGTCTTCTTCCTCCGCTCCCTTTTGGTCTGAATGAGGCAGGAGCTAGTCAAACGCTCCTTTAGAGAGGATGCTTCAATGGCAGGTGCCATCTTCATGTCCAACACCGCCACAAGGGAGCTGTGCTTCCGTTCCAACATCTTTGGACTTCCCATAGAGTACCAACCTTTTGTGCGGAATATCAGACAAGGAATGCCTTTGTTTCTGTTTGATCATACTGAACGCAAACTCTATGGGGTCTTTGAGGCTACCTCTGATGGTGGATTCAATATTATCAGATCTGCCTTTTCGTCGATTGGATGCTCATATCCTGCACAGGTCTGCTTCAAAATTATTTGGAAGTGCAGACCACTCACCGAAGATGAGTTTTCACCTGCCATAAAAGAGAACTACTATATGCCATGGAAGTTCTACTTTGACCTTTCCTACCAACAGGTTGTCTGCTTATATCAGTTATTTGATGAGAAGAGGGTTGAACATCCTATTCACAACCATTCAAAGAGTGCTAATTTGGAAAATGATCCCTTTAGGAAAGGGACACAAGAAAGAAAGAGCTTGAGTCCAAATATTCCTCATTTTCCTGCTGATCAGCCAGGTCTTTTTATGCCTGCGAGTACCCCCAGATTTTCAACAGTTGAAGCAAGCTACTGTGCATCCACAAGCATGCACCAAGCACCACATCCCAATATGTCAATGCCCCTGGGAACTAATCCTTTTGGAGTTCAAATTGCACCTGTCCACAACAGCCATCACGACCAAGCAGAACTACCTTACAACAATAACATGCTTTTTCCTGGATACTTGCCTTCTGGACATGTAGCTCGGGACACAACTCAGGAACTTGGGCTTTCTGCAAATCACTCATATCCTCCATCTATGGGCTATGCATACGGTTGCTTGCCGCCTCCTGGACATAGACCTCAGGATGCAATTGCAGGAGATGTAAACTATGCCCCTCCATATCCTCAATTTCCTCTGCCAAATGAACAAGGCAGTGCTACTAACAGGAGAGATTATTATGATGTCCACTGCAAACAATGCCAGTTTGAAGATATTTATGAATCGGAGCATCAGCACTTCAGCAAAGCAAAAGTCTTAGCACCTCCAATATTAAACCAACAAGATGTTCCAGTATACCCTGCAATTGCTGAATCAGCATTTGATCAGCGGAAAGAATGTTTCACTGAAGAAGACTCTGAGAATGCTCGACAGAAACAAAGTTTTAATCACACTGATATGGTGTTTTCTGGTCTTGGAAATAGCAATAGAGCCTACATGCCAGACCATCTAAACAAAAATCCTGATATAAGATCTGAAAGCAACACAATAGCTGTTGGTCAGCATGCACAAAGCAGTGTGTTTTCTCGCTTATCACGGATCCCACCACCACTGCATCAAGAAATTCCTGGTCCTTCGCTCAACAAGTTGGTTCTCTCACTTTCTCAGAGAGCAGAACATTGGGGTAACCAGGATAAAATAATCACCAATGATGTTTGTGAACAGTTGGTCAGTGAGCAAGTAATGGATACACCCTATCCTCTTGCTGAGTTGAACCAGCAAAGCGGCTTAATTGAAGAAGAAATTGAAGGGCTTGCATTCATGAACTTTAAGAGACGCAGCGAAACAAGGAACTTGGATGCAAATCTAGGAAAGGAAATTAGGGGGCAAGTGAAGAGAAGAAAGCTTGTTCGCCCTTCCTTTGGAGAAGTTAACAATGCTGGTAGTTCTGGAAAAGAGCTTGAAGCTAAAGTCTTAGAGGGAGAAAAACATAGCAATGATGAACATGATGAAAACAAGTTCAGTATTGACCTAAATAAACCTGCTGCCATAGATGGTGATGTAGCAAAGGAGGATGATACCACCACCGCATTGCCACATCCTTCTGTTGCGATCAAGATGCATAAAGAGAAACCATCTGAAGAAAACATGAGCAAGCCAAACAGCCCAAATACGACGGAAGAGATGAAAAAACAAGATCCATCCCTTGACAGCGCCACGCATACTGAAAAGATTTCACTTGAATTAGATGTTGCGGATTTGAATACAATTGACCAGTCCAAACTGCAAGCAATTCTCAGCTCATCTCTGTTGCAAGCACTTGACAAGCTCAGAAGAGAGAAGCTCAACAACTCTGAAGAGGCTGAAGAGGTAAAGATAGCAACTTGACTGTTTCCATGAACTCTGAAGGAGATGCAAAGCCTACATGCAGTTGATTTTAGTACGTAGTACCAACCAATACTACTTCAGCAGTACTGGAGCAGAATGACTACAAGGCATGGTTAAGCACCAAGTATCATGTGATGTAGTATAGGAACAATAGCTACCTTTTCTCATGTAGTAGTACCATTGCTATTTTGTGTTATCCTATAAAACTAACTAATATTCTCGGGGAAGTACGGCTCTCTCACGCTGCTCTGCCACGTAGATCTGTGTGATCTGTCATGTGGAATTGTAAAGCTTCTGCGTGCAAAGAAATGGATTGAGTTTCTCTATAGTTATAGTGCTGTT]
[+] EMBL AK103005             [GGAGATCAATCGGCAAGCCAAAAAACAAAAAAAGATTTCTTTTCTTTTCTTTTCCTCCTGTTGCTCGTCGACGCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCATCGCCATCAACTCTCCCGGCCGGCCGTCTTCTTCCTCCGCTCCCTTTTGGTCTGAATGAGGCAGGAGCTAGTCAAACGCTCCTTTAGAGAGGATGCTTCAATGGCAGGTGCCATCTTCATGTCCAACACCGCCACAAGGGAGCTGTGCTTCCGTTCCAACATCTTTGGACTTCCCATAGAGTACCAACCTTTTGTGCGGAATATCAGACAAGGAATGCCTTTGTTTCTGTTTGATCATACTGAACGCAAACTCTATGGGGTCTTTGAGGCTACCTCTGATGGTGGATTCAATATTATCAGATCTGCCTTTTCGTCGATTGGATGCTCATATCCTGCACAGGTCTGCTTCAAAATTATTTGGAAGTGCAGACCACTCACCGAAGATGAGTTTTCACCTGCCATAAAAGAGAACTACTATATGCCATGGAAGTTCTACTTTGACCTTTCCTACCAACAGGTTGTCTGCTTATATCAGTTATTTGATGAGAAGAGGGTTGAACATCCTATTCACAACCATTCAAAGAGTGCTAATTTGGAAAATGATCCCTTTAGGAAAGGGACACAAGAAAGAAAGAGCTTGAGTCCAAATATTCCTCATTTTCCTGCTGATCAGCCAGGTCTTTTTATGCCTGCGAGTACCCCCAGATTTTCAACAGTTGAAGCAAGCTACTGTGCATCCACAAGCATGCACCAAGCACCACATCCCAATATGTCAATGCCCCTGGGAACTAATCCTTTTGGAGTTCAAATTGCACCTGTCCACAACAGCCATCACGACCAAGCAGAACTACCTTACAACAATAACATGCTTTTTCCTGGATACTTGCCTTCTGGACATGTAGCTCGGGACACAACTCAGGAACTTGGGCTTTCTGCAAATCACTCATATCCTCCATCTATGGGCTATGCATACGGTTGCTTGCCGCCTCCTGGACATAGACCTCAGGATGCAATTGCAGGAGATGTAAACTATGCCCCTCCATATCCTCAATTTCCTCTGCCAAATGAACAAGGCAGTGCTACTAACAGGAGAGATTATTATGATGTCCACTGCAAACAATGCCAGTTTGAAGATATTTATGAATCGGAGCATCAGCACTTCAGCAAAGCAAAAGTCTTAGCACCTCCAATATTAAACCAACAAGATGTTCCAGTATACCCTGCAATTGCTGAATCAGCATTTGATCAGCGGAAAGAATGTTTCACTGAAGAAGACTCTGAGAATGCTCGACAGAAACAAAGTTTTAATCACACTGATATGGTGTTTTCTGGTCTTGGAAATAGCAATAGAGCCTACATGCCAGACCATCTAAACAAAAATCCTGATATAAGATCTGAAAGCAACACAATAGCTGTTGGTCAGCATGCACAAAGCAGTGTGTTTTCTCGCTTATCACGGATCCCACCACCACTGCATCAAGAAATTCCTGGTCCTTCGCTCAACAAGTTGGTTCTCTCACTTTCTCAGAGAGCAGAACATTGGGGTAACCAGGATAAAATAATCACCAATGATGTTTGTGAACAGTTGGTCAGTGAGCAAGTAATGGATACACCCTATCCTCTTGCTGAGTTGAACCAGCAAAGCGGCTTAATTGAAGAAGAAATTGAAGGGCTTGCATTCATGAACTTTAAGAGACGCAGCGAAACAAGGAACTTGGATGCAAATCTAGGAAAGGAAATTAGGGGGCAAGTGAAGAGAAGAAAGCTTGTTCGCCCTTCCTTTGGAGAAGTTAACAATGCTGGTAGTTCTGGAAAAGAGCTTGAAGCTAAAGTCTTAGAGGGAGAAAAACATAGCAATGATGAACATGATGAAAACAAGTTCAGTATTGACCTAAATAAACCTGCTGCCATAGATGGTGATGTAGCAAAGGAGGATGATACCACCACCGCATTGCCACATCCTTCTGTTGCGATCAAGATGCATAAAGAGAAACCATCTGAAGAAAACATGAGCAAGCCAAACAGCCCAAATACGACGGAAGAGATGAAAAAACAAGATCCATCCCTTGACAGCGCCACGCATACTGAAAAGATTTCACTTGAATTAGATGTTGCGGATTTGAATACAATTGACCAGTCCAAACTGCAAGCAATTCTCAGCTCATCTCTGTTGCAAGCACTTGACAAGCTCAGAAGAGAGAAGCTCAACAACTCTGAAGAGGCTGAAGAGGTAAAGATAGCAACTTGACTGTTTCCATGAACTCTGAAGGAGATGCAAAGCCTACATGCAGTTGATTTTAGTACGTAGTACCAACCAATACTACTTCAGCAGTACTGGAGCAGAATGACTACAAGGCATGGTTAAGCACCAAGTATCATGTGATGTAGTATAGGAACAATAGCTACCTTTTCTCATGTAGTAGTACCATTGCTATTTTGTGTTATCCTATAAAACTAACTAATATTCTCGGGGAAGTACGGCTCTCTCACGCTGCTCTGCCACGTAGATCTGTGTGATCTGTCATGTGGAATTGTAAAGCTTCTGCGTGCAAAGAAATGGATT                           ]
[+] EMBL CF307110             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gGAAAGAGCTTGAGTCCAAATATTCCTCATTTTCCTGCTGATCAGCCAGGTCTTTTTATGCCTGCGAGTACCCCCAGATTTTCAACAGTTGAAGCAAGCTACTGTGCATCCACAAGCATGCACCAAGCACCACATCCCAATATGTCAATGCCCCTGGGAACTAATCCTTTTGGAGTTCAAATTGCACCTGTCCACAACAGCCATCACGACCAAGCAGAACTACCTTACAACAATAACATGCTTTTTCCTGGATACTTGCCTTCTGGACATGTAGCTCGGGACACAACTCAGGAACTTGGGCTTTCTGCAAATCACTCATATCCTCCATCTATGGGCTATGCATACGGTTGCTTGCCGCCTCCTGGACATAGACCTCAGGATGCAATTGCAGGAGATGTAAACTATGCCCCTCCATATCCTCAATTTCCTCTGCCAAATGAACAAGGCAGTGCTACTAACAGGAGAGATTATTATGATGTCCACTGCAAACAATGCCAGTTTGAAGATATTTATGAATCGGAGCATCAGCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BP184511             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TAAACTATGCCCCTCCATATCCTCAATTTCCTCTGCCAAATGAACAAGGCAGTGCTACTAACAGGAGAGATTATTATGATGTCCACTGCAAACAATGCCAGTTTGAAGATATTTATGAATCGGAGCATCAGCACTTCAGCAAAGCAAAAGTCTTAGCACCTCCAATATTAAACCAACAAGATGTTCCAGTATACCCTGCAATTGCTGAATCAGCATTTGATCAGCGGAAAGAATGTTTCACTGAAGAAGACTCTGAGAATGCTCGACAGAAACAAAGTTTTAATCACACTGATATGGTGTTTTCTGGTCTTGGAAATAGCAATAGAGCCTACATGCCAGACCATCTAAACAAAAATCCTGATATAAGATCTGAAAGCAACACAATAGCTGTTGGTCAGCATGCACAAAGCAGTGTGTTTTCTCGCTTATCACGGATCCCACCACCACTGCATCAAGAAATTCCTGGTCCTTCGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]


>consensus_8662#0 GGAGATCAATCGGCAAGCCAAAAAACAAAAAAAGATTTCTTTTCTTTTCTTTTCCTCCTG TTGCTCGTCGACGCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCATCGCCATCAACTCTC CCGGCCGGCCGTCTTCTTCCTCCGCTCCCTTTTGGTCTGAATGAGGCAGGAGCTAGTCAA ACGCTCCTTTAGAGAGGATGCTTCAATGGCAGGTGCCATCTTCATGTCCAACACCGCCAC AAGGGAGCTGTGCTTCCGTTCCAACATCTTTGGACTTCCCATAGAGTACCAACCTTTTGT GCGGAATATCAGACAAGGAATGCCTTTGTTTCTGTTTGATCATACTGAACGCAAACTCTA TGGGGTCTTTGAGGCTACCTCTGATGGTGGATTCAATATTATCAGATCTGCCTTTTCGTC GATTGGATGCTCATATCCTGCACAGGTCTGCTTCAAAATTATTTGGAAGTGCAGACCACT CACCGAAGATGAGTTTTCACCTGCCATAAAAGAGAACTACTATATGCCATGGAAGTTCTA CTTTGACCTTTCCTACCAACAGGTTGTCTGCTTATATCAGTTATTTGATGAGAAGAGGGT TGAACATCCTATTCACAACCATTCAAAGAGTGCTAATTTGGAAAATGATCCCTTTAGGAA AGGGACACAAGAAAGAAAGAGCTTGAGTCCAAATATTCCTCATTTTCCTGCTGATCAGCC AGGTCTTTTTATGCCTGCGAGTACCCCCAGATTTTCAACAGTTGAAGCAAGCTACTGTGC ATCCACAAGCATGCACCAAGCACCACATCCCAATATGTCAATGCCCCTGGGAACTAATCC TTTTGGAGTTCAAATTGCACCTGTCCACAACAGCCATCACGACCAAGCAGAACTACCTTA CAACAATAACATGCTTTTTCCTGGATACTTGCCTTCTGGACATGTAGCTCGGGACACAAC TCAGGAACTTGGGCTTTCTGCAAATCACTCATATCCTCCATCTATGGGCTATGCATACGG TTGCTTGCCGCCTCCTGGACATAGACCTCAGGATGCAATTGCAGGAGATGTAAACTATGC CCCTCCATATCCTCAATTTCCTCTGCCAAATGAACAAGGCAGTGCTACTAACAGGAGAGA TTATTATGATGTCCACTGCAAACAATGCCAGTTTGAAGATATTTATGAATCGGAGCATCA GCACTTCAGCAAAGCAAAAGTCTTAGCACCTCCAATATTAAACCAACAAGATGTTCCAGT ATACCCTGCAATTGCTGAATCAGCATTTGATCAGCGGAAAGAATGTTTCACTGAAGAAGA CTCTGAGAATGCTCGACAGAAACAAAGTTTTAATCACACTGATATGGTGTTTTCTGGTCT TGGAAATAGCAATAGAGCCTACATGCCAGACCATCTAAACAAAAATCCTGATATAAGATC TGAAAGCAACACAATAGCTGTTGGTCAGCATGCACAAAGCAGTGTGTTTTCTCGCTTATC ACGGATCCCACCACCACTGCATCAAGAAATTCCTGGTCCTTCGCTCAACAAGTTGGTTCT CTCACTTTCTCAGAGAGCAGAACATTGGGGTAACCAGGATAAAATAATCACCAATGATGT TTGTGAACAGTTGGTCAGTGAGCAAGTAATGGATACACCCTATCCTCTTGCTGAGTTGAA CCAGCAAAGCGGCTTAATTGAAGAAGAAATTGAAGGGCTTGCATTCATGAACTTTAAGAG ACGCAGCGAAACAAGGAACTTGGATGCAAATCTAGGAAAGGAAATTAGGGGGCAAGTGAA GAGAAGAAAGCTTGTTCGCCCTTCCTTTGGAGAAGTTAACAATGCTGGTAGTTCTGGAAA AGAGCTTGAAGCTAAAGTCTTAGAGGGAGAAAAACATAGCAATGATGAACATGATGAAAA CAAGTTCAGTATTGACCTAAATAAACCTGCTGCCATAGATGGTGATGTAGCAAAGGAGGA TGATACCACCACCGCATTGCCACATCCTTCTGTTGCGATCAAGATGCATAAAGAGAAACC ATCTGAAGAAAACATGAGCAAGCCAAACAGCCCAAATACGACGGAAGAGATGAAAAAACA AGATCCATCCCTTGACAGCGCCACGCATACTGAAAAGATTTCACTTGAATTAGATGTTGC GGATTTGAATACAATTGACCAGTCCAAACTGCAAGCAATTCTCAGCTCATCTCTGTTGCA AGCACTTGACAAGCTCAGAAGAGAGAAGCTCAACAACTCTGAAGAGGCTGAAGAGGTAAA GATAGCAACTTGACTGTTTCCATGAACTCTGAAGGAGATGCAAAGCCTACATGCAGTTGA TTTTAGTACGTAGTACCAACCAATACTACTTCAGCAGTACTGGAGCAGAATGACTACAAG GCATGGTTAAGCACCAAGTATCATGTGATGTAGTATAGGAACAATAGCTACCTTTTCTCA TGTAGTAGTACCATTGCTATTTTGTGTTATCCTATAAAACTAACTAATATTCTCGGGGAA GTACGGCTCTCTCACGCTGCTCTGCCACGTAGATCTGTGTGATCTGTCATGTGGAATTGT AAAGCTTCTGCGTGCAAAGAAATGGATTGAGTTTCTCTATAGTTATAGTGCTGTT



consensusID : consensus_8662#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence
                              [CACATCCTTCTGTTGCGATCAAGATGCATAAAGAGAAACCATCTGAAGAAAACATGAGCAAGCCAAACAGCCCAAATACGACGGAAGAGATGAAAAAACAAGATCCATCCCTTGACAGCGCCACGCATACTGAAAAGATTTCACTTGAATTAGATGTTGCGGATTTGAATACAATTGACCAGTCCAAACTGCAAGCAATTCTCAGCTCATCTCTGTTGCAAGCACTTGACAAGCTCAGAAGAGAGAAGCTCAACAACTCTGAAGAGGCTGAAGAGGTAAAGATAGCAACTTGACTGTTTCCATGAACTCTGAAGGAGATGCAAAGCCTACATGCAGTTGATTTTAGTACGTAGTACCAACCAATACTACTTCAGCAGTACTGGAGCAGAATGACTACAAGGCATGGTTAAGCACCAAGTATCATGTGATGTAGTATAGGAACAATAGCTACCTTTTCTCATGTAGTAGGACCATTGCTATTTTGTGTTATCCTATAAAACTAACTAATATTCTCGGGGAAGTACGGCTCTCTCACGCTGCTCTGCCACGTAGATCTGTGTGATCTGTCATGTGGAATTGTAAAGCTTCTGCGTGCAAAGAAATGGATTGAGTTTCTCTATAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BP184512             [CACATCCTTCTGTTGCGATCAAGATGCATAAAGAGAAACCATCTGAAGAAAACATGAGCAAGCCAAACAGCCCAAATACGACGGAAGAGATGAAAAAACAAGATCCATCCCTTGACAGCGCCACGCATACTGAAAAGATTTCACTTGAATTAGATGTTGCGGATTTGAATACAATTGACCAGTCCAAACTGCAAGCAATTCTCAGCTCATCTCTGTTGCAAGCACTTGACAAGCTCAGAAGAGAGAAGCTCAACAACTCTGAAGAGGCTGAAGAGGTAAAGATAGCAACTTGACTGTTTCCATGAACTCTGAAGGAGATGCAAAGCCTACATGCAGTTGATTTTAGTACGTAGTACCAACCAATACTACTTCAGCAGTACTGGAGCAGAATGACTACAAGGCATGGTTAAGCACCAAGTATCATGTGATGTAGTATAGGAACAATAGCTACCTTTTCTCATGTAGTAGGACCATTGCTATTTTGTGTTATCCTATAAAACTAACTAATATTCTCGGGGAAGTACGGCTCTCTCACGCTGCTCTGCCACGTAGATCTGTGTGATCTGTCATGTGGAATTGTAAAGCTTCTGCGTGCAAAGAAATGGATTGAGTTTCTCTATAAAAAAAAAAAAAAAAAAAAA]


>consensus_8662#1 CACATCCTTCTGTTGCGATCAAGATGCATAAAGAGAAACCATCTGAAGAAAACATGAGCA AGCCAAACAGCCCAAATACGACGGAAGAGATGAAAAAACAAGATCCATCCCTTGACAGCG CCACGCATACTGAAAAGATTTCACTTGAATTAGATGTTGCGGATTTGAATACAATTGACC AGTCCAAACTGCAAGCAATTCTCAGCTCATCTCTGTTGCAAGCACTTGACAAGCTCAGAA GAGAGAAGCTCAACAACTCTGAAGAGGCTGAAGAGGTAAAGATAGCAACTTGACTGTTTC CATGAACTCTGAAGGAGATGCAAAGCCTACATGCAGTTGATTTTAGTACGTAGTACCAAC CAATACTACTTCAGCAGTACTGGAGCAGAATGACTACAAGGCATGGTTAAGCACCAAGTA TCATGTGATGTAGTATAGGAACAATAGCTACCTTTTCTCATGTAGTAGGACCATTGCTAT TTTGTGTTATCCTATAAAACTAACTAATATTCTCGGGGAAGTACGGCTCTCTCACGCTGC TCTGCCACGTAGATCTGTGTGATCTGTCATGTGGAATTGTAAAGCTTCTGCGTGCAAAGA AATGGATTGAGTTTCTCTATAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8662#0      GGAGATCAATCGGCAAGCCAAAAAACAAAAAAAGATTTCTTTTCTTTTCTTTTCCTCCTG 60
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      TTGCTCGTCGACGCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCATCGCCATCAACTCTC 120
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      CCGGCCGGCCGTCTTCTTCCTCCGCTCCCTTTTGGTCTGAATGAGGCAGGAGCTAGTCAA 180
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      ACGCTCCTTTAGAGAGGATGCTTCAATGGCAGGTGCCATCTTCATGTCCAACACCGCCAC 240
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      AAGGGAGCTGTGCTTCCGTTCCAACATCTTTGGACTTCCCATAGAGTACCAACCTTTTGT 300
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      GCGGAATATCAGACAAGGAATGCCTTTGTTTCTGTTTGATCATACTGAACGCAAACTCTA 360
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      TGGGGTCTTTGAGGCTACCTCTGATGGTGGATTCAATATTATCAGATCTGCCTTTTCGTC 420
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      GATTGGATGCTCATATCCTGCACAGGTCTGCTTCAAAATTATTTGGAAGTGCAGACCACT 480
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      CACCGAAGATGAGTTTTCACCTGCCATAAAAGAGAACTACTATATGCCATGGAAGTTCTA 540
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      CTTTGACCTTTCCTACCAACAGGTTGTCTGCTTATATCAGTTATTTGATGAGAAGAGGGT 600
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      TGAACATCCTATTCACAACCATTCAAAGAGTGCTAATTTGGAAAATGATCCCTTTAGGAA 660
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      AGGGACACAAGAAAGAAAGAGCTTGAGTCCAAATATTCCTCATTTTCCTGCTGATCAGCC 720
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      AGGTCTTTTTATGCCTGCGAGTACCCCCAGATTTTCAACAGTTGAAGCAAGCTACTGTGC 780
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      ATCCACAAGCATGCACCAAGCACCACATCCCAATATGTCAATGCCCCTGGGAACTAATCC 840
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      TTTTGGAGTTCAAATTGCACCTGTCCACAACAGCCATCACGACCAAGCAGAACTACCTTA 900
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      CAACAATAACATGCTTTTTCCTGGATACTTGCCTTCTGGACATGTAGCTCGGGACACAAC 960
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      TCAGGAACTTGGGCTTTCTGCAAATCACTCATATCCTCCATCTATGGGCTATGCATACGG 1020
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      TTGCTTGCCGCCTCCTGGACATAGACCTCAGGATGCAATTGCAGGAGATGTAAACTATGC 1080
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      CCCTCCATATCCTCAATTTCCTCTGCCAAATGAACAAGGCAGTGCTACTAACAGGAGAGA 1140
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      TTATTATGATGTCCACTGCAAACAATGCCAGTTTGAAGATATTTATGAATCGGAGCATCA 1200
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      GCACTTCAGCAAAGCAAAAGTCTTAGCACCTCCAATATTAAACCAACAAGATGTTCCAGT 1260
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      ATACCCTGCAATTGCTGAATCAGCATTTGATCAGCGGAAAGAATGTTTCACTGAAGAAGA 1320
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      CTCTGAGAATGCTCGACAGAAACAAAGTTTTAATCACACTGATATGGTGTTTTCTGGTCT 1380
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      TGGAAATAGCAATAGAGCCTACATGCCAGACCATCTAAACAAAAATCCTGATATAAGATC 1440
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      TGAAAGCAACACAATAGCTGTTGGTCAGCATGCACAAAGCAGTGTGTTTTCTCGCTTATC 1500
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      ACGGATCCCACCACCACTGCATCAAGAAATTCCTGGTCCTTCGCTCAACAAGTTGGTTCT 1560
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      CTCACTTTCTCAGAGAGCAGAACATTGGGGTAACCAGGATAAAATAATCACCAATGATGT 1620
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      TTGTGAACAGTTGGTCAGTGAGCAAGTAATGGATACACCCTATCCTCTTGCTGAGTTGAA 1680
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      CCAGCAAAGCGGCTTAATTGAAGAAGAAATTGAAGGGCTTGCATTCATGAACTTTAAGAG 1740
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      ACGCAGCGAAACAAGGAACTTGGATGCAAATCTAGGAAAGGAAATTAGGGGGCAAGTGAA 1800
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      GAGAAGAAAGCTTGTTCGCCCTTCCTTTGGAGAAGTTAACAATGCTGGTAGTTCTGGAAA 1860
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      AGAGCTTGAAGCTAAAGTCTTAGAGGGAGAAAAACATAGCAATGATGAACATGATGAAAA 1920
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      CAAGTTCAGTATTGACCTAAATAAACCTGCTGCCATAGATGGTGATGTAGCAAAGGAGGA 1980
consensus_8662#1      ------------------------------------------------------------
                                                                                  

consensus_8662#0      TGATACCACCACCGCATTGCCACATCCTTCTGTTGCGATCAAGATGCATAAAGAGAAACC 2040
consensus_8662#1      --------------------CACATCCTTCTGTTGCGATCAAGATGCATAAAGAGAAACC 40
                                          ****************************************

consensus_8662#0      ATCTGAAGAAAACATGAGCAAGCCAAACAGCCCAAATACGACGGAAGAGATGAAAAAACA 2100
consensus_8662#1      ATCTGAAGAAAACATGAGCAAGCCAAACAGCCCAAATACGACGGAAGAGATGAAAAAACA 100
                      ************************************************************

consensus_8662#0      AGATCCATCCCTTGACAGCGCCACGCATACTGAAAAGATTTCACTTGAATTAGATGTTGC 2160
consensus_8662#1      AGATCCATCCCTTGACAGCGCCACGCATACTGAAAAGATTTCACTTGAATTAGATGTTGC 160
                      ************************************************************

consensus_8662#0      GGATTTGAATACAATTGACCAGTCCAAACTGCAAGCAATTCTCAGCTCATCTCTGTTGCA 2220
consensus_8662#1      GGATTTGAATACAATTGACCAGTCCAAACTGCAAGCAATTCTCAGCTCATCTCTGTTGCA 220
                      ************************************************************

consensus_8662#0      AGCACTTGACAAGCTCAGAAGAGAGAAGCTCAACAACTCTGAAGAGGCTGAAGAGGTAAA 2280
consensus_8662#1      AGCACTTGACAAGCTCAGAAGAGAGAAGCTCAACAACTCTGAAGAGGCTGAAGAGGTAAA 280
                      ************************************************************

consensus_8662#0      GATAGCAACTTGACTGTTTCCATGAACTCTGAAGGAGATGCAAAGCCTACATGCAGTTGA 2340
consensus_8662#1      GATAGCAACTTGACTGTTTCCATGAACTCTGAAGGAGATGCAAAGCCTACATGCAGTTGA 340
                      ************************************************************

consensus_8662#0      TTTTAGTACGTAGTACCAACCAATACTACTTCAGCAGTACTGGAGCAGAATGACTACAAG 2400
consensus_8662#1      TTTTAGTACGTAGTACCAACCAATACTACTTCAGCAGTACTGGAGCAGAATGACTACAAG 400
                      ************************************************************

consensus_8662#0      GCATGGTTAAGCACCAAGTATCATGTGATGTAGTATAGGAACAATAGCTACCTTTTCTCA 2460
consensus_8662#1      GCATGGTTAAGCACCAAGTATCATGTGATGTAGTATAGGAACAATAGCTACCTTTTCTCA 460
                      ************************************************************

consensus_8662#0      TGTAGTAGTACCATTGCTATTTTGTGTTATCCTATAAAACTAACTAATATTCTCGGGGAA 2520
consensus_8662#1      TGTAGTAGGACCATTGCTATTTTGTGTTATCCTATAAAACTAACTAATATTCTCGGGGAA 520
                      ******** ***************************************************

consensus_8662#0      GTACGGCTCTCTCACGCTGCTCTGCCACGTAGATCTGTGTGATCTGTCATGTGGAATTGT 2580
consensus_8662#1      GTACGGCTCTCTCACGCTGCTCTGCCACGTAGATCTGTGTGATCTGTCATGTGGAATTGT 580
                      ************************************************************

consensus_8662#0      AAAGCTTCTGCGTGCAAAGAAATGGATTGAGTTTCTCTATAGTTATAGTGCTGTT----- 2635
consensus_8662#1      AAAGCTTCTGCGTGCAAAGAAATGGATTGAGTTTCTCTATAAAAAAAAAAAAAAAAAAAA 640
                      *****************************************   * *             

consensus_8662#0      -
consensus_8662#1      A 641
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)