These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 3622 fasta sequence [TTTTCGTCTCTCTGCCTTCCTTCTTCTTCCTCTTCTTCTTCCTTGTGATCGAAACTTCCAACCCAAACCCCCCACCAAATCGCAAATCTCCCACCACACATTGCTTTCTCGAAATCTCTCCGATCCCCCCCGGCGAATCCCGATCGCGCGTCGGCGGCGGCGGTGGTCGACTGGCGAAGTGGAGGGGTTTTGAGGAGGCGCGGCCGGGGGGCATTGGTGGGATTTTTTCGGCGCGCGTCGCGACGGAATTAAAGGAGATACGAAGTTTGTTGCATTTAGATGACATAAGACAGAGATGAAAGTCGGCGCTCTTTTGACCTCAGCTGGAATCAACATTAGCCTCTGTATACTTTTTTTGTCACTGTATTCCGTTCTGAGGAAGCAACCGCAAAATGTTAAGGTCTATTTTGGAAGAAGGATTGCTGAGGAGAATAGTAGGCTCAGGGAGGCTTTTATTTTGGAGAGATTTGTTCCATCCGCTAGCTGGATTTTGAGAAGTCTTCGATGCACGGAGGATGAACTCTTAGCTACTGCTGGGTTGGATGCAGTTGTCTTCAATAGGATTCTTGTATTTAGGTATGTACACAATTACTTGATTCTCTGTTCCACTTTAATATTTTTTATCTTATTTGAAGTTTATATAGATGTTTCTTTTTATGCTGTTTCTTTGTGTGCCTTGAGAGTTTAGACCATCAGGAATCAACTTATACTTTCACTTAAAAGGTTCGCCGTGGCGCTTTGAAAATGAAAATCAAGCTAAATACGATTATTTAAACTAGT-GGTTTTTAATCTCTAATTGTTGACTGGTATGATGAGTCATTTCCTCTGTCAAATAGGATAGGTAAAAAAAA--ACAAAATAATATGGGAATCAAATAACTTCAAAAAAGTTAATGATAATAAAAAATCTTATGCCAAAGTTGATAATGTGCATACCAACATTCATCGGGGTCTCACATGGTATGCCACATAAAGTTATTACTTTATATGTATTCATTTGCCTACTGCATTCTCACTATATTACTTAAGTCTTCAATTTTGGTTTTATATCCAAGATATGCTTATGTGTTTTTCTTTTCAATAGCATACGCATATTCTCCTTAGCCGCTTTCCTTTGTGTACTTGGAGTTCTTCCACTGAATTATTTTGGACAAGATATGCTCCATGTACGGATTCCTTCAGCATCATTGGAGACATTTACAATTGGAAATATGCAAGAGAGATCAAGATGGTGAGCTATGGAGCCTCTCTTACATGATTATGTTCGAACTTTAAGAGTTCAAATGTTAAATACAACATCTTATGTATTTATCTTCAGTCCGTAACTGATTTTATACTGTCTGCTGGTGTGGTGTTATGTGCAATCTGAAGTAACTAGTTCACGTTTATTGCATGCACTGATAACTGAATTGTTTAGGCATACATTATAGAAAGTCATAGATACCTCTTGGATTCTTTTTACACATTGGCTATAACTGCAGGCTCTGGGTCCATTGTGTTGCACTGTACATCATATCTGGTGTGGCTTGCCTTCTTCTATACCTTGAGTACAAGCATATTGCTAGGCTGAGGTTACTTCATGTTTCTCGAGCATCGACCAATCCTAGCCATTTTACTGTGCTTGTTCGTGGAGTACCAAAATCAACTAAAGAATCAATTAGTTGCACTGTTGAGAGTTTCTTCACCAAGTATCATGTGTCGAGTTACCTTTCTCATCAGATTATTTATAAAGTCGGGAAACTTCGGAAGATTGTGACTGGTGCAAAGAAGGCTTATAAGAAATTTAAACATTTCAAGGGCACCACAGTTGATCAGAGATGCGGACCAATTACATATAGATGTGGTCTTTGTGGAGCTTCATCAAAGTCGTTCGAGTTGCTGCCTGTTGAACCTGAGCAAGAGATGAAAAAACATGATGTGAAAGATTCAGAGTTGAGCTTACCTGATAAGGATTGTGGTGCTGCTTTTGTATTTTTCAAAACTCGGTATGCAGCCCTGGTCGTATCAGAAATTGTTCAGACATCCAATCCTATGGAATGGGTTACTAGTCTTGCTCCAGATCGAGATGACGTATATTGGTCAAATCTTTGGTTACCCTACAAGCAGCTTTGGATTCGCCGTATAGTTACACTTTCGGGTTCTATTGTTTTTATGTTCCTGTTTCTCATACCTGTGACATTTATACAAGGTCTAACTCAGTTGGAGCAGCTGCAGCAAAGGCTCCCTTTCCTAAAT-GGCATA-TTAAAAAAGAAGTACATAACCCAGCTAGTGACCGGATACCTTCCCAGTGTCATCTTGCAAATATTTTTATACACTGTTCCCCCAACCATGATGTTTTTTTCTACATTAGAAGGACCCGTGTCCCACAGTGAAAGGAAGAGAAGTGCCTGCTGTAAAGTATTATACTTCACTATTTGGAATGTATTCTTTGTGAATGTCCTATCAGGTTCTGCAATTAGCCAAGTGAATGCGTTATCAAGCCCAAAGGACATTCCTATGGTGCTTGCTAGAGCGGTACCTGTACAGGCTACATTCTTTACCACCTATGTACTGACTTCTGGTTGGGCTAGTTTATCATCAGAACTTATGCAACTCTTTGGTCTCACATGGAACTTTATAATGAAGTATGTTTTGAGAATGAAAGAGGATAGCTACTTTGTCCCGTCATTTCCCTATCATACTGAAGTGCCAAAAGTTCTGTTGTTTGGACTACTGGGATTCACATGCTCTGTATTAGCACCTCTCATCTTGCCCTTTTTACTGGTGTACTTTTTTCTTGGTTATGTTGTGTACCGCAACCAGTTCCTCAATGTTTATTGCACGAAATACGACACAGGTGGTCTGTATTGGCCGATTGCTCACTATACAACAATCTTCTCTATTGTGCTCACCCAGATCATCTGTCTTGGTGTCTTTGGGCTTAAAGAATCCCCAGTAGCTGCAGGCTTCACTGTACCTCTCATCATCCTCACTCTTTTATTCAACCAGTATTGCAGCAATCGTCTTCGGCCATTATTCAAGACTCTCCCTGCACAGGATTTAATTGACATGGACAGGGAGGACGAGCAATCGGGAAGAATGGATGACATTCACCACCGTCTTCATTCTGCTTACTGCCAGTTTGCTGACACTGACGACATACCTCTGAAAGGAGTTCACGTTGACAGAGATGCAGATGCAAGCGGAAGTTCCGGTGAATCTAGCTGCAAAGAAGACACCAACCAACCCACAACCAGTGACATTTCTCACCCTACACTGGAAGGACTCCCTGTAAACCGGCTACGGCATGCAGTGAGGTCGCTCAGTTCCATCATCAGGTTACAGAAGAGAGGCCTGTCACCACAGCCCGCTGGACCCTCCGCCGATGTAAATCCGCAAACTGCATAAGTTTTGCAGATAGGACATACATACAGTGACCAAAGAAGCATACAAATGAATATACAAAAAAAAAAGGCATAGAGATGCATATAAAAGAAAAGAAGCATAGAAATGAAAGAGAGCGCCATCTGTCCTAGTTGCTAGGGTAAAATTTTGTTTGTTTTAAGTTTTAACTAGTGCCTGAGCAACTTGTGTCAGATCCTTTTGGCCATACAAAAGTTCTGATTCTTCAATTGATTGGTGATAC] [+] EMBL AK103691 [TTTTCGTCTCTCTGCCTTCCTTCTTCTTCCTCTTCTTCTTCCTTGTGATCGAAACTTCCAACCCAAACCCCCCACCAAATCGCAAATCTCCCACCACACATTGCTTTCTCGAAATCTCTCCGATCCCCCCCGGCGAATCCCGATCGCGCGTCGGCGGCGGCGGTGGTCGACTGGCGAAGTGGAGGGGTTTTGAGGAGGCGCGGCCGGGGGGCATTGGTGGGATTTTTTCGGCGCGCGTCGCGACGGAATTAAAGGAGATACGAAGTTTGTTGCATTTAGATGACATAAGACAGAGATGAAAGTCGGCGCTCTTTTGACCTCAGCTGGAATCAACATTAGCCTCTGTATACTTTTTTTGTCACTGTATTCCGTTCTGAGGAAGCAACCGCAAAATGTTAAGGTCTATTTTGGAAGAAGGATTGCTGAGGAGAATAGTAGGCTCAGGGAGGCTTTTATTTTGGAGAGATTTGTTCCATCCGCTAGCTGGATTTTGAGAAGTCTTCGATGCACGGAGGATGAACTCTTAGCTACTGCTGGGTTGGATGCAGTTGTCTTCAATAGGATTCTTGTATTTAGGTATGTACACAATTACTTGATTCTCTGTTCCACTTTAATATTTTTTATCTTATTTGAAGTTTATATAGATGTTTCTTTTTATGCTGTTTCTTTGTGTGCCTTGAGAGTTTAGACCATCAGGAATCAACTTATACTTTCACTTAAAAGGTTCGCCGTGGCGCTTTGAAAATGAAAATCAAGCTAAATACGATTATTTAAACTAGT GGTTTTTAATCTCTAATTGTTGACTGGTATGATGAGTCATTTCCTCTGTCAAATAGGATAGGTAAAAAAAA ACAAAATAATATGGGAATCAAATAACTTCAAAAAAGTTAATGATAATAAAAAATCTTATGCCAAAGTTGATAATGTGCATACCAACATTCATCGGGGTCTCACATGGTATGCCACATAAAGTTATTACTTTATATGTATTCATTTGCCTACTGCATTCTCACTATATTACTTAAGTCTTCAATTTTGGTTTTATATCCAAGATATGCTTATGTGTTTTTCTTTTCAATAGCATACGCATATTCTCCTTAGCCGCTTTCCTTTGTGTACTTGGAGTTCTTCCACTGAATTATTTTGGACAAGATATGCTCCATGTACGGATTCCTTCAGCATCATTGGAGACATTTACAATTGGAAATATGCAAGAGAGATCAAGATGGTGAGCTATGGAGCCTCTCTTACATGATTATGTTCGAACTTTAAGAGTTCAAATGTTAAATACAACATCTTATGTATTTATCTTCAGTCCGTAACTGATTTTATACTGTCTGCTGGTGTGGTGTTATGTGCAATCTGAAGTAACTAGTTCACGTTTATTGCATGCACTGATAACTGAATTGTTTAGGCATACATTATAGAAAGTCATAGATACCTCTTGGATTCTTTTTACACATTGGCTATAACTGCAGGCTCTGGGTCCATTGTGTTGCACTGTACATCATATCTGGTGTGGCTTGCCTTCTTCTATACCTTGAGTACAAGCATATTGCTAGGCTGAGGTTACTTCATGTTTCTCGAGCATCGACCAATCCTAGCCATTTTACTGTGCTTGTTCGTGGAGTACCAAAATCAACTAAAGAATCAATTAGTTGCACTGTTGAGAGTTTCTTCACCAAGTATCATGTGTCGAGTTACCTTTCTCATCAGATTATTTATAAAGTCGGGAAACTTCGGAAGATTGTGACTGGTGCAAAGAAGGCTTATAAGAAATTTAAACATTTCAAGGGCACCACAGTTGATCAGAGATGCGGACCAATTACATATAGATGTGGTCTTTGTGGAGCTTCATCAAAGTCGTTCGAGTTGCTGCCTGTTGAACCTGAGCAAGAGATGAAAAAACATGATGTGAAAGATTCAGAGTTGAGCTTACCTGATAAGGATTGTGGTGCTGCTTTTGTATTTTTCAAAACTCGGTATGCAGCCCTGGTCGTATCAGAAATTGTTCAGACATCCAATCCTATGGAATGGGTTACTAGTCTTGCTCCAGATCGAGATGACGTATATTGGTCAAATCTTTGGTTACCCTACAAGCAGCTTTGGATTCGCCGTATAGTTACACTTTCGGGTTCTATTGTTTTTATGTTCCTGTTTCTCATACCTGTGACATTTATACAAGGTCTAACTCAGTTGGAGCAGCTGCAGCAAAGGCTCCCTTTCCTAAAT GGCATA TTAAAAAAGAAGTACATAACCCAGCTAGTGACCGGATACCTTCCCAGTGTCATCTTGCAAATATTTTTATACACTGTTCCCCCAACCATGATGTTTTTTTCTACATTAGAAGGACCCGTGTCCCACAGTGAAAGGAAGAGAAGTGCCTGCTGTAAAGTATTATACTTCACTATTTGGAATGTATTCTTTGTGAATGTCCTATCAGGTTCTGCAATTAGCCAAGTGAATGCGTTATCAAGCCCAAAGGACATTCCTATGGTGCTTGCTAGAGCGGTACCTGTACAGGCTACATTCTTTACCACCTATGTACTGACTTCTGGTTGGGCTAGTTTATCATCAGAACTTATGCAACTCTTTGGTCTCACATGGAACTTTATAATGAAGTATGTTTTGAGAATGAAAGAGGATAGCTACTTTGTCCCGTCATTTCCCTATCATACTGAAGTGCCAAAAGTTCTGTTGTTTGGACTACTGGGATTCACATGCTCTGTATTAGCACCTCTCATCTTGCCCTTTTTACTGGTGTACTTTTTTCTTGGTTATGTTGTGTACCGCAACCAGTTCCTCAATGTTTATTGCACGAAATACGACACAGGTGGTCTGTATTGGCCGATTGCTCACTATACAACAATCTTCTCTATTGTGCTCACCCAGATCATCTGTCTTGGTGTCTTTGGGCTTAAAGAATCCCCAGTAGCTGCAGGCTTCACTGTACCTCTCATCATCCTCACTCTTTTATTCAACCAGTATTGCAGCAATCGTCTTCGGCCATTATTCAAGACTCTCCCTGCACAGGATTTAATTGACATGGACAGGGAGGACGAGCAATCGGGAAGAATGGATGACATTCACCACCGTCTTCATTCTGCTTACTGCCAGTTTGCTGACACTGACGACATACCTCTGAAAGGAGTTCACGTTGACAGAGATGCAGATGCAAGCGGAAGTTCCGGTGAATCTAGCTGCAAAGAAGACACCAACCAACCCACAACCAGTGACATTTCTCACCCTACACTGGAAGGACTCCCTGTAAACCGGCTACGGCATGCAGTGAGGTCGCTCAGTTCCATCATCAGGTTACAGAAGAGAGGCCTGTCACCACAGCCCGCTGGACCCTCCGCCGATGTAAATCCGCAAACTGCATAAGTTTTGCAGATAGGACATACATACAGTGACCAAAGAAGCATACAAATGAATATACAAAAAAAAAAGGCATAGAGATGCATATAAAAGAAAAGAAGCATAGAAATGAAAGAGAGCGCCATCTGTCCTAGTTGCTAGGGTAAAATTTTGTTTGTTTTAAGTTTTAACTAGTGCCTGAGCAACTTGTGTCAGATCCTTTTGGCCATACAAAAGTTCTGATTCTTCAATTGATTGGTG ] [+] EMBL CF303963 [ AGATACGAAGTTTGTTGCATTTAGATGACATAAGACAGAGATGAAAGTCGGCGCTCTTTTGACCTCAGCTGGAATCAACATTAGCCTCTGTATACTTTTTTTGTCACTGTATTCCGTTCTGAGGAAGCAACCGCAAAATGTTAAGGTCTATTTTGGAAGAAGGATTGCTGAGGAGAATAGTAGGCTCAGGGAGGCTTTTATTTTGGAGAGATTTGTTCCATCCGCTAGCTGGATTTTGAGAAGTCTTCGATGCACGGAGGATGAACTCTTAGCTACTGCTGGGTTGGATGCAGTTGTCTTCAATAGGATTCTTGTATTTAGGTATGTACACAATTACTTGATTCTCTGTTCCACTTTAATATTTTTTATCTTATTTGAAGTTTATATAGATGTTTCTTTTTATGCTGTTTCTTTGTGTGCCTTGAGAGTTTAGACCATCAGGAATCAACTTATACTTTCACTTAAAAGGTTCGCCGTGGCGCTTTGAAAATGAAAATCAAGCTAAATACGATTATTTAAACTAGTGGGTTTTTAATCTCTAATTGTTGACTGGTATGATGAGTCATTTCCTCTGTCAAATAGGATAGGTAAAAAAAAACACAAAATAATATGGGAATCAAATAACTTCAAAAAAGTTAATGATAATAAAAAATCTTATGCCAAAGTTGATAATGTG ] [+] EMBL AA752435 [ gaGTGACA TTATACMA GTCTAACTCAGTTKGAGCAGCTGCAGCAAAGGCTCCCTTTCCTAAATWGGCATATTTAAAAAAGAAGTACATAACCCAGCTAGTGACCGGATACCTTCCCAGTGTCATCTTGCAAATATTTTTGTACACTGTTCCCCCAACCATGATGTTTTTTTCTACATTAGAAGGACCCGTGTCCCACAGTGAAAGGAAGAGAAGTGCCTGCTGTAAAGTA TATACTTCACTATTTGGAATGTATTCTTTGTGAATGTCCTATCAGGTTCTGCAATTAGCCAAGTGAATGCGTTATCAAGCCCAAAGGACATTCCTATGGTGCTTGCTAGAGCGGTACCTGTACAGGSTACATTCTTTACCACCTAT ] [+] EMBL AK061864 [ AATATTTTTATACACTGTTCCCCCAACCATGATGTTTTTTTCTACATTAGAAGGACCCGTGTCCCACAGTGAAAGGAAGAGAAGTGCCTGCTGTAAAGTATTATACTTCACTATTTGGAATGTATTCTTTGTGAATGTCCTATCAGGTTCTGCAATTAGCCAAGTGAATGCGTTATCAAGCCCAAAGGACATTCCTATGGTGCTTGCTAGAGCGGTACCTGTACAGGCTACATTCTTTACCACCTATGTACTGACTTCTGGTTGGGCTAGTTTATCATCAGAACTTATGCAACTCTTTGGTCTCACATGGAACTTTATAATGAAGTATGTTTTGAGAATGAAAGAGGATAGCTACTTTGTCCCGTCATTTCCCTATCATACTGAAGTGCCAAAAGTTCTGTTGTTTGGACTACTGGGATTCACATGCTCTGTATTAGCACCTCTCATCTTGCCCTTTTTACTGGTGTACTTTTTTCTTGGTTATGTTGTGTACCGCAACCAGTTCCTCAATGTTTATTGCACGAAATACGACACAGGTGGTCTGTATTGGCCGATTGCTCACTATACAACAATCTTCTCTATTGTGCTCACCCAGATCATCTGTCTTGGTGTCTTTGGGCTTAAAGAATCCCCAGTAGCTGCAGGCTTCACTGTACCTCTCATCATCCTCACTCTTTTATTCAACCAGTATTGCAGCAATCGTCTTCGGCCATTATTCAAGACTCTCCCTGCACAGGATTTAATTGACATGGACAGGGAGGACGAGCAATCGGGAAGAATGGATGACATTCACCACCGTCTTCATTCTGCTTACTGCCAGTTTGCTGACACTGACGACATACCTCTGAAAGGAGTTCACGTTGACAGAGATGCAGATGCAAGCGGAAGTTCCGGTGAATCTAGCTGCAAAGAAGACACCAACCAACCCACAACCAGTGACATTTCTCACCCTACACTGGAAGGACTCCCTGTAAACCGGCTACGGCATGCAGTGAGGTCGCTCAGTTCCATCATCAGGTTACAGAAGAGAGGCCTGTCACCACAGCCCGCTGGACCCTCCGCCGATGTAAATCCGCAAACTGCATAAGTTTTGCAGATAGGACATACATACAGTGACCAAAGAAGCATACAAATGAATATACAAAAAAAAAAGGCATAGAGATGCATATAAAAGAAAAGAAGCATAGAAATGAAAGAGAGCGCCATCTGTCCTAGTTGCTAGGGTAAAATTTTGTTTGTTTTAAGTTTTAACTAGTGCCTGAGCAACTTGTGTCAGATCCTTTTGGCCATACAAAAGTTCTGATTCTTCAATTGATTGGTGATAC] [+] EMBL AA749708 [ AGCTACTTTGTCCCGTCATTTCCCTATCATACTGAAGTGCCAAAAG TCTGTTNTTTGGACTACTGGGATTCACATGCTCTGTATTAGCACCTCTCATCTTGCCCTTTTTACTGGTGTACTTTTTTCTTGGTTATGTTGTGATCCGCAACCAGTTCCTCAATGTTTATNGCACAAAATACGACACAGGNG CTG ATAGGCCGA NG CACTATACAACA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||