These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1343 fasta sequence [TGCTGGTGGTGGTACAGATATTATGCATCCTTTGAATGAGGCAATGGCATCATTGTCAAGTGCTCATGATGTGCTTCCACAAATCTTTCTTATGACTGATGGATCAGTTGATGATGAACATAATATATGCCAAACTGTGAAAACGGAGCTCATCAGCAGAGGATCTAAATCTCCTCGGATTTCTACTTTTGGACTAGGTTTGTATTGCAACCACTATTTCTTGCGCATGCTGGCATCAATAGGCAGGGGGCATTATGATGCTGCATTTGAGACAGGATCAATTGAGAGTCAGGTACTTAGGTGGTTCAGGAAAGCATCGAGTACAATAGTTGCAAACATCTCCATTGATGCTACAGCACATCTTGATGAATTTGAAATCGATTCTGAATACATTCCAGACATTTCAGCAAAAAGTCCTTTATGTATATCTGGGAAATACCAAGGCAAGTTCCCAGATATGGTTACAGCTAAAGGTTACTTGGCTGACATGAGAGAGATCTCGATTGAACTTAAGGTGCAGCATATAAAGGATATACCCCTTGACAAAGTTTTGGCGGCACAGCAGATTGGCCTTCTCACAGCGAAGGCATGGCTTTCTTCTGACAAGCAACTGGAGAGAAAGGTGGTGAAACTAAGCATTCAAAATAGCATTCCTTCAGAGTACACGAGCATGGTCCTACTTCAAACATTGGAGAAGGTAGATGCAGCACAAAAGGTCAAGCAGAAACTGAAAGGTCACAAGGGCCCCGACGAACCTCGACGGATCCCGCTCCAATGCCTCAAGCTCGGGTTCGGCGACCGGGCCGCCACCAGGGAGAACCTCGTCACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACGAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTGTGTTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACATAGATAGAGTTTGCGAAGAAGAAAAAAAAGCCCGTGCATCTCCATACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGCGATCAGGTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGCCATCAGGTTTCAGGTTTGGACCTCTCCAAAGTCCAAACGTTCTGGTGCTGGTTTAGAGACATTTGTGGGTTATTTGGTTTTGAGGAATCAAGCCATTTATGGGATGATGGGG] [+] EMBL AK111336 [TGCTGGTGGTGGTACAGATATTATGCATCCTTTGAATGAGGCAATGGCATCATTGTCAAGTGCTCATGATGTGCTTCCACAAATCTTTCTTATGACTGATGGATCAGTTGATGATGAACATAATATATGCCAAACTGTGAAAACGGAGCTCATCAGCAGAGGATCTAAATCTCCTCGGATTTCTACTTTTGGACTAGGTTTGTATTGCAACCACTATTTCTTGCGCATGCTGGCATCAATAGGCAGGGGGCATTATGATGCTGCATTTGAGACAGGATCAATTGAGAGTCAGGTACTTAGGTGGTTCAGGAAAGCATCGAGTACAATAGTTGCAAACATCTCCATTGATGCTACAGCACATCTTGATGAATTTGAAATCGATTCTGAATACATTCCAGACATTTCAGCAAAAAGTCCTTTATGTATATCTGGGAAATACCAAGGCAAGTTCCCAGATATGGTTACAGCTAAAGGTTACTTGGCTGACATGAGAGAGATCTCGATTGAACTTAAGGTGCAGCATATAAAGGATATACCCCTTGACAAAGTTTTGGCGGCACAGCAGATTGGCCTTCTCACAGCGAAGGCATGGCTTTCTTCTGACAAGCAACTGGAGAGAAAGGTGGTGAAACTAAGCATTCAAAATAGCATTCCTTCAGAGTACACGAGCATGGTCCTACTTCAAACATTGGAGAAGGTAGATGCAGCACAAAAGGTCAAGCAGAAACTGAAAGGTCACAAGGGCCCCGACGAACCTCGACGGATCCCGCTCCAATGCCTCAAGCTCGGGTTCGGCGACCGGGCCGCCACCAGGGAGAACCTCGTCACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACGAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTGTGTTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACATAGATAGAGTTTGCGAAGAAGAAAAAAAAGCCCGTGCATCTCCATACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGCGATCAGGTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGCCATCAGGTTTCAGGTTTGGACCTCTCCAAAGTCCAAACGTTCTGGTGCTGGTTTAGAGACATTTGTGGGTTATTTGGTTTTGAGGAATCAAGCCATTTATGGGATGATGGGG] [+] EMBL OS0847A [ CGAGTACAATAGTTGCAAACATCTCCATTGATGCTACAGCACATCTTGATGAATTTGAAATCGATTCTGAATACATTCCAGACATTTCAGCAAAAAGTCCTTTATGTATATCTGGGAAATACCAAGGCAAGTTCCCAGATATGGTTACAGCTAAAGGTTACTTGGCTGACATGAGAGAGATCTCGATTGAACTTAAGGTGCAGCATATAAAGGATATACCCCTTGACAAAGTTTTGGCGGCACAGCAGATTGGCCTTCTCACAGCGAAGGCATGGCTTTCTTCTGACAAGCAACTGGAGAGAAAGGTGGTGA ] [+] EMBL AU182584 [ ACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACGAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTGTGTTTGTAATTTGGGGTGAGAGGAGAGTATTCGAGTGTACATAGATAGAGTTTGCGAAGAAGAAAAAAAAGCCCGTGCATCTCCATACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGTGATCAGGTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGCCATCAGGTTTCAGGTTaaaa ] consensusID : consensus_8669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [GGCCGCCACCAGGGAGAACCTCGTCACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACNAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTGTGTTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACGTTAAGATGGAAGTAAAATGTAGAGAAAATAGAACTGCCGGGGCCGCTGGGCTGTCTCCAAAAAAAAAAAAAAAA] [+] EMBL CA759063 [GGCCGCCACCAGGGAGAACCTCGTCACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACNAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTGTGTTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACGTTAAGATGGAAGTAAAATGTAGAGAAAATAGAACTGCCGGGGCCGCTGGGCTGTCTCCAAAAAAAAAAAAAAAA] consensusID : consensus_8669#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [TANCCGTCTGGTTTTGTGNTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACATAGATAGAGTTTGCGAAGAAGAAAAAAAAGCCCGTGCATCTCCATACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGTGATCAGGTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGCCATCAGGTTTCAGGTTTGGNCCTCTCCAAAGTCCAAAAAAAAAAAAAAA] [+] EMBL C98159 [TANCCGTCTGGTTTTGTGNTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACATAGATAGAGTTTGCGAAGAAGAAAAAAAAGCCCGTGCATCTCCATACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGTGATCAGGTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGCCATCAGGTTTCAGGTTTGGNCCTCTCCAAAGTCCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8669#0 TGCTGGTGGTGGTACAGATATTATGCATCCTTTGAATGAGGCAATGGCATCATTGTCAAG 60 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 TGCTCATGATGTGCTTCCACAAATCTTTCTTATGACTGATGGATCAGTTGATGATGAACA 120 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 TAATATATGCCAAACTGTGAAAACGGAGCTCATCAGCAGAGGATCTAAATCTCCTCGGAT 180 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 TTCTACTTTTGGACTAGGTTTGTATTGCAACCACTATTTCTTGCGCATGCTGGCATCAAT 240 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 AGGCAGGGGGCATTATGATGCTGCATTTGAGACAGGATCAATTGAGAGTCAGGTACTTAG 300 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 GTGGTTCAGGAAAGCATCGAGTACAATAGTTGCAAACATCTCCATTGATGCTACAGCACA 360 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 TCTTGATGAATTTGAAATCGATTCTGAATACATTCCAGACATTTCAGCAAAAAGTCCTTT 420 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 ATGTATATCTGGGAAATACCAAGGCAAGTTCCCAGATATGGTTACAGCTAAAGGTTACTT 480 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 GGCTGACATGAGAGAGATCTCGATTGAACTTAAGGTGCAGCATATAAAGGATATACCCCT 540 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 TGACAAAGTTTTGGCGGCACAGCAGATTGGCCTTCTCACAGCGAAGGCATGGCTTTCTTC 600 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 TGACAAGCAACTGGAGAGAAAGGTGGTGAAACTAAGCATTCAAAATAGCATTCCTTCAGA 660 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 GTACACGAGCATGGTCCTACTTCAAACATTGGAGAAGGTAGATGCAGCACAAAAGGTCAA 720 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 GCAGAAACTGAAAGGTCACAAGGGCCCCGACGAACCTCGACGGATCCCGCTCCAATGCCT 780 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 CAAGCTCGGGTTCGGCGACCGGGCCGCCACCAGGGAGAACCTCGTCACGGGTTTCGGCGA 840 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 CGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCT 900 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 ------------------------------------------------------------ consensus_8669#0 CGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTG 960 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 --------------------------------------------------GGCCGCCACC 10 consensus_8669#0 CGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACGAGTGCTG 1020 consensus_8669#2 ------------------------------------------------------------ consensus_8669#1 AGGGAGAACCTCGTCACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTC 70 consensus_8669#0 CGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTG-TGTTTGTAATTTGGG 1079 consensus_8669#2 ----------------------------TANCCGTCTGGTTTTG-TGNTTGTAATTTGGG 31 consensus_8669#1 AACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATC 130 * *** *** * ** ** *** * consensus_8669#0 GAGAGAGGAGAGTATTCGAGTGTACATAG----ATAGAGTTTGCGAAGAAGAAAAAAAAG 1135 consensus_8669#2 GAGAGAGGAGAGTATTCGAGTGTACATAG----ATAGAGTTTGCGAAGAAGAAAAAAAAG 87 consensus_8669#1 AAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCG 190 ** * * * ** * ** * ** * * * ** ** * consensus_8669#0 CCCGTGCATCTCCA-TACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGCGATCAG 1194 consensus_8669#2 CCCGTGCATCTCCA-TACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGTGATCAG 146 consensus_8669#1 TTCGCCTGCCTCGGCTGCTACNAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAG 250 ** *** * ** ** * * ** * **** * ** consensus_8669#0 --GTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGC-CATCAGGTTTCAGGTTTGGA 1251 consensus_8669#2 --GTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGC-CATCAGGTTTCAGGTTTGGN 203 consensus_8669#1 CCGTCTGGTTTTGTGTTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACGTTAAGA 310 *** * *** * * ***** * * ** ** * * * *** * consensus_8669#0 CCTCTCCAAAGTCCAAACGTTCTGGTGCTGGTTTAGAGACATTTGTGGGTTATTTGGTTT 1311 consensus_8669#2 CCTCTCCAAAGTCCAAAAAAAAAAAAAAA------------------------------- 232 consensus_8669#1 TGGAAGTAAAATGTAGAGAAAATAGAACTGCCGGGGCCGCTGGGCTGTCTCCAAAAAAAA 370 *** * * * consensus_8669#0 TGAGGAATCAAGCCATTTATGGGATGATGGGG 1343 consensus_8669#2 -------------------------------- consensus_8669#1 AAAAAAAA------------------------ 378 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||